[med-svn] [pycorrfit] branch upstream updated (cc4ac82 -> 9d1050e)
Alex Mestiashvili
malex-guest at moszumanska.debian.org
Wed Mar 18 17:33:54 UTC 2015
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malex-guest pushed a change to branch upstream
in repository pycorrfit.
from cc4ac82 Imported Upstream version 0.8.3
new 9d1050e Imported Upstream version 0.8.6
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
ChangeLog.txt | 20 +
MANIFEST.in | 11 +-
PyCorrFit_doc.pdf | Bin 581216 -> 0 bytes
README.md | 2 +-
Readme.txt | 3 +-
bin/pycorrfit | 20 +-
{doc-src => doc}/Bibliography.bib | 0
.../Images/PyCorrFit_Screenshot_CSFCS.png | Bin
.../Images/PyCorrFit_Screenshot_Main.png | Bin
{doc-src => doc}/Images/PyCorrFit_icon.png | Bin
{doc-src => doc}/Images/PyCorrFit_icon.svg | 0
{doc-src => doc}/Images/PyCorrFit_icon_dark.svg | 0
{doc-src => doc}/Images/PyCorrFit_logo.svg | 0
{doc-src => doc}/Images/PyCorrFit_logo_dark.pdf | Bin
{doc-src => doc}/Images/PyCorrFit_logo_dark.png | Bin
{doc-src => doc}/Images/PyCorrFit_logo_dark.svg | 0
{doc-src => doc}/PyCorrFit_doc.tex | 0
{doc-src => doc}/PyCorrFit_doc_content.tex | 14 +-
{doc-src => doc}/PyCorrFit_doc_models.tex | 0
{doc-src => doc}/README.md | 2 +-
.../ExampleFunc_CS_2D+2D+S+T.txt | 0
.../ExampleFunc_CS_3D+S+T.txt | 0
.../ExampleFunc_Exp_correlated_noise.txt | 0
.../ExampleFunc_SFCS_1C_2D_Autocorrelation.txt | 0
.../ExampleFunc_SFCS_1C_2D_Cross-correlation.txt | 0
.../ExampleFunc_TIRF_zOnly.txt | 0
.../Model_AC_3D+T_confocal.txt | 0
.../Model_Flow_AC_3D_confocal.txt | 0
.../Model_Flow_CC_Backward_3D_confocal.txt | 0
.../Model_Flow_CC_Forward_3D_confocal.txt | 0
.../sample_sessions}/CSFCS_DiO-in-DOPC.pcfs | Bin
.../ConfocalFCS_Alexa488_xcorr.pcfs | Bin
pycorrfit/PyCorrFit.py | 10 +
{src => pycorrfit}/__init__.py | 9 +-
pycorrfit/__main__.py | 34 +
{src => pycorrfit}/doc.py | 103 ++-
{src => pycorrfit}/edclasses.py | 2 +-
pycorrfit/fcs_data_set.py | 739 ++++++++++++++++++
{src => pycorrfit}/fitting.py | 9 +-
{src => pycorrfit}/frontend.py | 713 +++++++++++-------
{src => pycorrfit}/icon.py | 0
src/PyCorrFit.py => pycorrfit/main.py | 122 +--
{src => pycorrfit}/misc.py | 4 +-
{src => pycorrfit}/models/MODEL_TIRF_1C.py | 0
{src => pycorrfit}/models/MODEL_TIRF_2D2D.py | 0
{src => pycorrfit}/models/MODEL_TIRF_3D2D.py | 0
.../models/MODEL_TIRF_3D2Dkin_Ries.py | 0
{src => pycorrfit}/models/MODEL_TIRF_3D3D.py | 0
.../models/MODEL_TIRF_gaussian_1C.py | 0
.../models/MODEL_TIRF_gaussian_3D2D.py | 0
.../models/MODEL_TIRF_gaussian_3D3D.py | 0
.../models/MODEL_classic_gaussian_2D.py | 0
.../models/MODEL_classic_gaussian_3D.py | 0
.../models/MODEL_classic_gaussian_3D2D.py | 0
{src => pycorrfit}/models/__init__.py | 33 +-
pycorrfit/openfile.py | 766 +++++++++++++++++++
{src => pycorrfit}/page.py | 8 +-
{src => pycorrfit}/plotting.py | 4 +-
{src => pycorrfit}/readfiles/__init__.py | 56 +-
{src => pycorrfit}/readfiles/read_ASC_ALV.py | 0
{src => pycorrfit}/readfiles/read_CSV_PyCorrFit.py | 0
{src => pycorrfit}/readfiles/read_FCS_Confocor3.py | 191 +++--
.../readfiles/read_SIN_correlator_com.py | 0
{src => pycorrfit}/readfiles/read_mat_ries.py | 0
pycorrfit/readfiles/read_pt3_PicoQuant.py | 95 +++
pycorrfit/readfiles/read_pt3_scripts/LICENSE | 340 +++++++++
pycorrfit/readfiles/read_pt3_scripts/__init__.py | 0
.../read_pt3_scripts/correlation_methods.py | 134 ++++
.../read_pt3_scripts/correlation_objects.py | 527 +++++++++++++
pycorrfit/readfiles/read_pt3_scripts/fib4.pyx | 60 ++
.../readfiles/read_pt3_scripts/import_methods.py | 190 +++++
{src => pycorrfit}/tools/__init__.py | 28 +-
{src => pycorrfit}/tools/average.py | 4 +-
{src => pycorrfit}/tools/background.py | 8 +-
{src => pycorrfit}/tools/batchcontrol.py | 45 +-
{src => pycorrfit}/tools/chooseimport.py | 6 +-
{src => pycorrfit}/tools/comment.py | 0
{src => pycorrfit}/tools/datarange.py | 0
{src => pycorrfit}/tools/example.py | 0
{src => pycorrfit}/tools/globalfit.py | 4 +-
{src => pycorrfit}/tools/info.py | 4 +-
{src => pycorrfit}/tools/overlaycurves.py | 28 +-
{src => pycorrfit}/tools/parmrange.py | 4 +-
{src => pycorrfit}/tools/plotexport.py | 0
{src => pycorrfit}/tools/simulation.py | 4 +-
{src => pycorrfit}/tools/statistics.py | 4 +-
{src => pycorrfit}/tools/trace.py | 0
{src => pycorrfit}/usermodel.py | 7 +-
setup.py | 51 +-
src/openfile.py | 838 ---------------------
90 files changed, 3833 insertions(+), 1423 deletions(-)
delete mode 100644 PyCorrFit_doc.pdf
rename {doc-src => doc}/Bibliography.bib (100%)
rename {doc-src => doc}/Images/PyCorrFit_Screenshot_CSFCS.png (100%)
rename {doc-src => doc}/Images/PyCorrFit_Screenshot_Main.png (100%)
rename {doc-src => doc}/Images/PyCorrFit_icon.png (100%)
rename {doc-src => doc}/Images/PyCorrFit_icon.svg (100%)
rename {doc-src => doc}/Images/PyCorrFit_icon_dark.svg (100%)
rename {doc-src => doc}/Images/PyCorrFit_logo.svg (100%)
rename {doc-src => doc}/Images/PyCorrFit_logo_dark.pdf (100%)
rename {doc-src => doc}/Images/PyCorrFit_logo_dark.png (100%)
rename {doc-src => doc}/Images/PyCorrFit_logo_dark.svg (100%)
rename {doc-src => doc}/PyCorrFit_doc.tex (100%)
rename {doc-src => doc}/PyCorrFit_doc_content.tex (99%)
rename {doc-src => doc}/PyCorrFit_doc_models.tex (100%)
rename {doc-src => doc}/README.md (95%)
rename {external_model_functions => examples/external_model_functions}/ExampleFunc_CS_2D+2D+S+T.txt (100%)
rename {external_model_functions => examples/external_model_functions}/ExampleFunc_CS_3D+S+T.txt (100%)
rename {external_model_functions => examples/external_model_functions}/ExampleFunc_Exp_correlated_noise.txt (100%)
rename {external_model_functions => examples/external_model_functions}/ExampleFunc_SFCS_1C_2D_Autocorrelation.txt (100%)
rename {external_model_functions => examples/external_model_functions}/ExampleFunc_SFCS_1C_2D_Cross-correlation.txt (100%)
rename {external_model_functions => examples/external_model_functions}/ExampleFunc_TIRF_zOnly.txt (100%)
rename {external_model_functions => examples/external_model_functions}/Model_AC_3D+T_confocal.txt (100%)
rename {external_model_functions => examples/external_model_functions}/Model_Flow_AC_3D_confocal.txt (100%)
rename {external_model_functions => examples/external_model_functions}/Model_Flow_CC_Backward_3D_confocal.txt (100%)
rename {external_model_functions => examples/external_model_functions}/Model_Flow_CC_Forward_3D_confocal.txt (100%)
rename {sample_sessions => examples/sample_sessions}/CSFCS_DiO-in-DOPC.pcfs (100%)
rename {sample_sessions => examples/sample_sessions}/ConfocalFCS_Alexa488_xcorr.pcfs (100%)
create mode 100644 pycorrfit/PyCorrFit.py
rename {src => pycorrfit}/__init__.py (93%)
create mode 100644 pycorrfit/__main__.py
rename {src => pycorrfit}/doc.py (65%)
rename {src => pycorrfit}/edclasses.py (99%)
create mode 100644 pycorrfit/fcs_data_set.py
rename {src => pycorrfit}/fitting.py (99%)
rename {src => pycorrfit}/frontend.py (77%)
rename {src => pycorrfit}/icon.py (100%)
rename src/PyCorrFit.py => pycorrfit/main.py (54%)
rename {src => pycorrfit}/misc.py (98%)
rename {src => pycorrfit}/models/MODEL_TIRF_1C.py (100%)
rename {src => pycorrfit}/models/MODEL_TIRF_2D2D.py (100%)
rename {src => pycorrfit}/models/MODEL_TIRF_3D2D.py (100%)
rename {src => pycorrfit}/models/MODEL_TIRF_3D2Dkin_Ries.py (100%)
rename {src => pycorrfit}/models/MODEL_TIRF_3D3D.py (100%)
rename {src => pycorrfit}/models/MODEL_TIRF_gaussian_1C.py (100%)
rename {src => pycorrfit}/models/MODEL_TIRF_gaussian_3D2D.py (100%)
rename {src => pycorrfit}/models/MODEL_TIRF_gaussian_3D3D.py (100%)
rename {src => pycorrfit}/models/MODEL_classic_gaussian_2D.py (100%)
rename {src => pycorrfit}/models/MODEL_classic_gaussian_3D.py (100%)
rename {src => pycorrfit}/models/MODEL_classic_gaussian_3D2D.py (100%)
rename {src => pycorrfit}/models/__init__.py (95%)
create mode 100644 pycorrfit/openfile.py
rename {src => pycorrfit}/page.py (99%)
rename {src => pycorrfit}/plotting.py (99%)
rename {src => pycorrfit}/readfiles/__init__.py (86%)
rename {src => pycorrfit}/readfiles/read_ASC_ALV.py (100%)
mode change 100755 => 100644
rename {src => pycorrfit}/readfiles/read_CSV_PyCorrFit.py (100%)
rename {src => pycorrfit}/readfiles/read_FCS_Confocor3.py (75%)
rename {src => pycorrfit}/readfiles/read_SIN_correlator_com.py (100%)
rename {src => pycorrfit}/readfiles/read_mat_ries.py (100%)
create mode 100644 pycorrfit/readfiles/read_pt3_PicoQuant.py
create mode 100644 pycorrfit/readfiles/read_pt3_scripts/LICENSE
create mode 100644 pycorrfit/readfiles/read_pt3_scripts/__init__.py
create mode 100644 pycorrfit/readfiles/read_pt3_scripts/correlation_methods.py
create mode 100644 pycorrfit/readfiles/read_pt3_scripts/correlation_objects.py
create mode 100644 pycorrfit/readfiles/read_pt3_scripts/fib4.pyx
create mode 100644 pycorrfit/readfiles/read_pt3_scripts/import_methods.py
rename {src => pycorrfit}/tools/__init__.py (91%)
rename {src => pycorrfit}/tools/average.py (99%)
rename {src => pycorrfit}/tools/background.py (99%)
rename {src => pycorrfit}/tools/batchcontrol.py (85%)
rename {src => pycorrfit}/tools/chooseimport.py (99%)
rename {src => pycorrfit}/tools/comment.py (100%)
rename {src => pycorrfit}/tools/datarange.py (100%)
rename {src => pycorrfit}/tools/example.py (100%)
rename {src => pycorrfit}/tools/globalfit.py (99%)
rename {src => pycorrfit}/tools/info.py (99%)
rename {src => pycorrfit}/tools/overlaycurves.py (96%)
rename {src => pycorrfit}/tools/parmrange.py (98%)
rename {src => pycorrfit}/tools/plotexport.py (100%)
rename {src => pycorrfit}/tools/simulation.py (99%)
rename {src => pycorrfit}/tools/statistics.py (99%)
rename {src => pycorrfit}/tools/trace.py (100%)
rename {src => pycorrfit}/usermodel.py (98%)
delete mode 100644 src/openfile.py
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