[med-svn] r18988 - in trunk/packages/cassiopee/tags: . 1.0.2+dfsg-1/debian
Olivier Sallou
osallou at moszumanska.debian.org
Sun Mar 22 11:17:04 UTC 2015
Author: osallou
Date: 2015-03-22 11:12:06 +0000 (Sun, 22 Mar 2015)
New Revision: 18988
Added:
trunk/packages/cassiopee/tags/1.0.2+dfsg-1/
trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/cassiopee.1
trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/changelog
trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/control
Removed:
trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/cassiopee.1
trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/changelog
trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/control
Log:
[svn-buildpackage] Tagging cassiopee 1.0.2+dfsg-1
Deleted: trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/cassiopee.1
===================================================================
--- trunk/packages/cassiopee/trunk/debian/cassiopee.1 2015-03-22 09:07:39 UTC (rev 18984)
+++ trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/cassiopee.1 2015-03-22 11:12:06 UTC (rev 18988)
@@ -1,54 +0,0 @@
-.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.45.1.
-.TH CASSIOPEE "1" "April 2014" "Cassiopee Version 1.0" "User Commands"
-.SH NAME
-Cassiopee \- manual page for Cassiopee Version 1.0
-.SH DESCRIPTION
-.SS "Usage:"
-.HP
-\fB\-u\fR: save index for later use
-.HP
-\fB\-s\fR: sequence to index
-.HP
-\fB\-p\fR: pattern to search
-.HP
-\fB\-f\fR: file containing pattern to search
-.HP
-\fB\-o\fR: output file
-.HP
-\fB\-r\fR: apply tree reduction
-.HP
-\fB\-m\fR: search mode: 0=DNA, 1=RNA, 2=Protein
-.HP
-\fB\-a\fR: allow alphabet ambiguity search
-.HP
-\fB\-n\fR: max consecutive N allowed matches in search
-.HP
-\fB\-e\fR: max substitution allowed matches in search
-.HP
-\fB\-i\fR: max indel allowed matches in search
-.HP
-\fB\-g\fR: generates a dot file of the graph
-.HP
-\fB\-d\fR: max depth of the graph
-.HP
-\fB\-t\fR: output format: 0:tsv (default), 1:json
-.HP
-\fB\-x\fR: minimum position in sequence
-.HP
-\fB\-y\fR: maximum position in sequence
-.HP
-\fB\-v\fR: show version
-.HP
-\fB\-h\fR: show this message
-.SH "SEE ALSO"
-The full documentation for
-.B Cassiopee
-is maintained as a Texinfo manual. If the
-.B info
-and
-.B Cassiopee
-programs are properly installed at your site, the command
-.IP
-.B info Cassiopee
-.PP
-should give you access to the complete manual.
Copied: trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/cassiopee.1 (from rev 18985, trunk/packages/cassiopee/trunk/debian/cassiopee.1)
===================================================================
--- trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/cassiopee.1 (rev 0)
+++ trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/cassiopee.1 2015-03-22 11:12:06 UTC (rev 18988)
@@ -0,0 +1,56 @@
+.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.45.1.
+.TH CASSIOPEE "1" "April 2014" "Cassiopee Version 1.0" "User Commands"
+.SH NAME
+Cassiopee \- manual page for Cassiopee Version 1.0
+.SH DESCRIPTION
+.SS "Usage:"
+.HP
+\fB\-l\fR: maximum index depth / maximum pattern size
+.HP
+\fB\-u\fR: save index for later use
+.HP
+\fB\-s\fR: sequence to index
+.HP
+\fB\-p\fR: pattern to search
+.HP
+\fB\-f\fR: file containing pattern to search
+.HP
+\fB\-o\fR: output file
+.HP
+\fB\-r\fR: apply tree reduction
+.HP
+\fB\-m\fR: search mode: 0=DNA, 1=RNA, 2=Protein
+.HP
+\fB\-a\fR: allow alphabet ambiguity search
+.HP
+\fB\-n\fR: max consecutive N allowed matches in search
+.HP
+\fB\-e\fR: max substitution allowed matches in search
+.HP
+\fB\-i\fR: max indel allowed matches in search
+.HP
+\fB\-g\fR: generates a dot file of the graph
+.HP
+\fB\-d\fR: max depth of the graph
+.HP
+\fB\-t\fR: output format: 0:tsv (default), 1:json
+.HP
+\fB\-x\fR: minimum position in sequence
+.HP
+\fB\-y\fR: maximum position in sequence
+.HP
+\fB\-v\fR: show version
+.HP
+\fB\-h\fR: show this message
+.SH "SEE ALSO"
+The full documentation for
+.B Cassiopee
+is maintained as a Texinfo manual. If the
+.B info
+and
+.B Cassiopee
+programs are properly installed at your site, the command
+.IP
+.B info Cassiopee
+.PP
+should give you access to the complete manual.
Deleted: trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/changelog
===================================================================
--- trunk/packages/cassiopee/trunk/debian/changelog 2015-03-22 09:07:39 UTC (rev 18984)
+++ trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/changelog 2015-03-22 11:12:06 UTC (rev 18988)
@@ -1,24 +0,0 @@
-cassiopee (1.0.1+dfsg-3) unstable; urgency=medium
-
- * d/control: remove unnecessary dep, managed by shlibs.
-
- -- Olivier Sallou <osallou at debian.org> Tue, 27 May 2014 07:36:52 +0200
-
-cassiopee (1.0.1+dfsg-2) unstable; urgency=medium
-
- * Fix missing Depends (Closes: #749302).
- * Remove hard coded runtime dependencies (Closes: #749303).
-
- -- Olivier Sallou <osallou at debian.org> Mon, 26 May 2014 12:57:58 +0200
-
-cassiopee (1.0.1+dfsg-1) unstable; urgency=low
-
- * New upstream release to fix FTBS on some archs (test failure)
-
- -- Olivier Sallou <osallou at debian.org> Mon, 14 Apr 2014 09:25:54 +0200
-
-cassiopee (1.0+dfsg-1) unstable; urgency=low
-
- * Initial release (Closes: #743930)
-
- -- Olivier Sallou <osallou at debian.org> Tue, 08 Apr 2014 12:59:31 +0200
Copied: trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/changelog (from rev 18986, trunk/packages/cassiopee/trunk/debian/changelog)
===================================================================
--- trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/changelog (rev 0)
+++ trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/changelog 2015-03-22 11:12:06 UTC (rev 18988)
@@ -0,0 +1,31 @@
+cassiopee (1.0.2+dfsg-1) unstable; urgency=medium
+
+ * New upstream release
+ * d/control: Standards 3.9.6
+
+ -- Olivier Sallou <osallou at debian.org> Sun, 22 Mar 2015 10:27:53 +0100
+
+cassiopee (1.0.1+dfsg-3) unstable; urgency=medium
+
+ * d/control: remove unnecessary dep, managed by shlibs.
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 27 May 2014 07:36:52 +0200
+
+cassiopee (1.0.1+dfsg-2) unstable; urgency=medium
+
+ * Fix missing Depends (Closes: #749302).
+ * Remove hard coded runtime dependencies (Closes: #749303).
+
+ -- Olivier Sallou <osallou at debian.org> Mon, 26 May 2014 12:57:58 +0200
+
+cassiopee (1.0.1+dfsg-1) unstable; urgency=low
+
+ * New upstream release to fix FTBS on some archs (test failure)
+
+ -- Olivier Sallou <osallou at debian.org> Mon, 14 Apr 2014 09:25:54 +0200
+
+cassiopee (1.0+dfsg-1) unstable; urgency=low
+
+ * Initial release (Closes: #743930)
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 08 Apr 2014 12:59:31 +0200
Deleted: trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/control
===================================================================
--- trunk/packages/cassiopee/trunk/debian/control 2015-03-22 09:07:39 UTC (rev 18984)
+++ trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/control 2015-03-22 11:12:06 UTC (rev 18988)
@@ -1,52 +0,0 @@
-Source: cassiopee
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Olivier Sallou <osallou at debian.org>
-Build-Depends: debhelper (>= 9.0.0), cmake, doxygen,
- libboost-serialization-dev,libboost-iostreams-dev,
- libgoogle-glog-dev, libcppunit-dev
-Standards-Version: 3.9.5
-Homepage: https://github.com/osallou/cassiopee-c
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/cassiopee/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/cassiopee/trunk/
-
-
-Package: cassiopee
-Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
-Description: index and search tool in genomic sequences
- Cassiopee index and search library C implementation.
- It is a complete rewrite of the ruby Cassiopee gem. It scans an input
- genomic sequence (dna/rna/protein) and search for a subsequence with
- exact match or allowing substitutions (Hamming distance) and/or
- insertion/deletions.
-
-Package: libcassie-doc
-Section: doc
-Architecture: all
-Depends: ${misc:Depends}, libjs-jquery
-Description: documentation for cassiopee library
- Doxygen generated documentation for the cassiopee library for development.
-
-Package: libcassie1
-Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends},
-Description: library implementating search algorithms
- Cassiopee index and search library C implementation.
- It is a complete rewrite of the ruby Cassiopee gem. It scans an input
- genomic sequence (dna/rna/protein) and search for a subsequence with
- exact match or allowing substitutions (Hamming distance) and/or
- insertion/deletions.
-
-Package: libcassie-dev
-Section: libdevel
-Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, libcassie1 (= ${binary:Version})
-Description: library and headers for development
- Cassiopee index and search library C implementation.
- It is a complete rewrite of the ruby Cassiopee gem. It scans an input
- genomic sequence (dna/rna/protein) and search for a subsequence with
- exact match or allowing substitutions (Hamming distance) and/or
- insertion/deletions.
-
Copied: trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/control (from rev 18986, trunk/packages/cassiopee/trunk/debian/control)
===================================================================
--- trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/control (rev 0)
+++ trunk/packages/cassiopee/tags/1.0.2+dfsg-1/debian/control 2015-03-22 11:12:06 UTC (rev 18988)
@@ -0,0 +1,52 @@
+Source: cassiopee
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Olivier Sallou <osallou at debian.org>
+Build-Depends: debhelper (>= 9.0.0), cmake, doxygen,
+ libboost-serialization-dev,libboost-iostreams-dev,
+ libgoogle-glog-dev, libcppunit-dev
+Standards-Version: 3.9.6
+Homepage: https://github.com/osallou/cassiopee-c
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/cassiopee/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/cassiopee/trunk/
+
+
+Package: cassiopee
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: index and search tool in genomic sequences
+ Cassiopee index and search library C implementation.
+ It is a complete rewrite of the ruby Cassiopee gem. It scans an input
+ genomic sequence (dna/rna/protein) and search for a subsequence with
+ exact match or allowing substitutions (Hamming distance) and/or
+ insertion/deletions.
+
+Package: libcassie-doc
+Section: doc
+Architecture: all
+Depends: ${misc:Depends}, libjs-jquery
+Description: documentation for cassiopee library
+ Doxygen generated documentation for the cassiopee library for development.
+
+Package: libcassie1
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends},
+Description: library implementating search algorithms
+ Cassiopee index and search library C implementation.
+ It is a complete rewrite of the ruby Cassiopee gem. It scans an input
+ genomic sequence (dna/rna/protein) and search for a subsequence with
+ exact match or allowing substitutions (Hamming distance) and/or
+ insertion/deletions.
+
+Package: libcassie-dev
+Section: libdevel
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, libcassie1 (= ${binary:Version})
+Description: library and headers for development
+ Cassiopee index and search library C implementation.
+ It is a complete rewrite of the ruby Cassiopee gem. It scans an input
+ genomic sequence (dna/rna/protein) and search for a subsequence with
+ exact match or allowing substitutions (Hamming distance) and/or
+ insertion/deletions.
+
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