[med-svn] [fastqc] branch master created (now 38fcf53)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository fastqc.

        at  38fcf53   Move Vcs to Git

This branch includes the following new commits:

       new  18fdf50   Standard conform directory layout
       new  c86e839   Some binary JARs without source need to be removed from upstream source.  To do this I shamelessly use not yet released uscan - to lazy to write a full get-orig-source target to do this.
       new  0442dde   remove pure debugging code from patch and make sure it applies cleanly; refreshed patches
       new  84ff92f   New upstream version
       new  b034ccf   Make sure executable goes to /usr/bin; fix menu section
       new  cfd8d34   Standards-Version: 3.9.4; debhelper 9; regard +dfsg suffix in watch file
       new  eabeb6b   Give advise how to easily prepare source tarball
       new  6f5ff5b   Write a more informative README.Debian in favour of installing the plain installation instructions from upstream
       new  0523e46   Do not install upstreams copy of GPL, install README.txt only once
       new  87a2beb   Specifying libsam-java once seems to be enough, added ${java:Depends} to Depends
       new  1bbdfb9   DEP3
       new  25506c7   Make use of javahelper trying to fix a CLASSPATH issue ... but failed (more on mailing list)
       new  ff0ecf9   Fix wrapper script to properly call jar file (thanks to Olivier Sallou)
       new  10161d1   Used help2man 2 create manpage (once the script was actually running)
       new  8e8cdc7   Fix broken help menu issue
       new  8c1c71b   Finally upload to unstable what seems to be ready - unfortunately no reports about tests with real data
       new  2f561d9   Close bug 697604, give debian path to load resources
       new  1aaf821   remove fuzz
       new  2d02e0c   remove fuzz
       new  7b21918   add myself as uploaded, remove deprecated DM-upload
       new  b1f3732   Move debian/upstream to debian/upstream/metadata
       new  21994ea   new upstream release 0.11.2
       new  f2926ce   update patches, can't build yet because requires a new dependency, see changelog
       new  705b8b5   remove apache commons math 3 extra included code and use Debian lib, update license before base64 embedded code
       new  ec22a7d   compile for java 1.6+, add info on license
       new  6f0b0c0   upload release 0.11.2
       new  9a94aea   fix Configuration dir loading
       new  ce9c5f2   upload bug fix 756296
       new  af14949   Do not hide fastqc in subdirectory for no reason
       new  e26462a   Adapt Vcs-Fields to new location
       new  f72918f   xz compression for repackaged upstream source; uversionmangle instead of dversionmangle to get correct     upstream tarball name
       new  f709b6d   d/manifest: Add /usr/share/java/commons-math3.jar
       new  3bf1f2e   New upstream version
       new  7135692   cme fix dpkg-control
       new  1577b0f   deban/watch: fix version mangling
       new  a3aa27b   Imported Upstream version 0.11.3+dfsg
       new  76cbec5   Merge tag 'upstream/0.11.3+dfsg'
       new  bd6ea78   Re-add debian/ dir after creating upstream branch
       new  38fcf53   Move Vcs to Git

The 39 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


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