[med-svn] [fastqc] 03/03: Try to base the build on ant rather than make (but failed)

[Andreas Tille]

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tille pushed a commit to branch master
in repository fastqc.

commit 456ac53867e5c9766c8103aea7dea62fc85897f4
Author: Andreas Tille <tille at debian.org>
Date:   Sun May 3 08:46:44 2015 +0200

    Try to base the build on ant rather than make (but failed)
---
 debian/patches/build_xml.patch | 15 +++++++++++++++
 debian/patches/series          |  3 ++-
 2 files changed, 17 insertions(+), 1 deletion(-)

diff --git a/debian/patches/build_xml.patch b/debian/patches/build_xml.patch
new file mode 100644
index 0000000..4c9162a
--- /dev/null
+++ b/debian/patches/build_xml.patch
@@ -0,0 +1,15 @@
+--- a/build.xml
++++ b/build.xml
+@@ -11,9 +11,9 @@
+     <property name="source" value="1.5"/>
+     <path id="FastQC.classpath">
+         <pathelement location="bin"/>
+-        <pathelement location="jbzip2-0.9.jar"/>
+-        <pathelement location="sam-1.103.jar"/>
+-        <pathelement location="cisd-jhdf5.jar"/>
++        <pathelement location="/usr/share/java/jbzip2.jar"/>
++        <pathelement location="/usr/share/java/sam.jar"/>
++        <pathelement location="/usr/share/java/jhdf5.jar"/>
+     </path>
+     <target name="init">
+         <mkdir dir="bin"/>
diff --git a/debian/patches/series b/debian/patches/series
index ee6c7d1..f2f9106 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,4 +1,5 @@
-Makefile.patch
+# Makefile.patch
+build_xml.patch
 fastqc.patch
 fix-help-call.patch
 set_configuration_path.patch

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