[med-svn] r19155 - in trunk/packages/R: . r-other-apmswapp r-other-apmswapp/trunk r-other-apmswapp/trunk/debian r-other-apmswapp/trunk/debian/source r-other-apmswapp/trunk/debian/upstream

[Andreas Tille]

Author: tille
Date: 2015-05-08 15:16:25 +0000 (Fri, 08 May 2015)
New Revision: 19155

Added:
   trunk/packages/R/r-other-apmswapp/
   trunk/packages/R/r-other-apmswapp/trunk/
   trunk/packages/R/r-other-apmswapp/trunk/debian/
   trunk/packages/R/r-other-apmswapp/trunk/debian/changelog
   trunk/packages/R/r-other-apmswapp/trunk/debian/compat
   trunk/packages/R/r-other-apmswapp/trunk/debian/control
   trunk/packages/R/r-other-apmswapp/trunk/debian/copyright
   trunk/packages/R/r-other-apmswapp/trunk/debian/rules
   trunk/packages/R/r-other-apmswapp/trunk/debian/source/
   trunk/packages/R/r-other-apmswapp/trunk/debian/source/format
   trunk/packages/R/r-other-apmswapp/trunk/debian/upstream/
   trunk/packages/R/r-other-apmswapp/trunk/debian/upstream/metadata
   trunk/packages/R/r-other-apmswapp/trunk/debian/watch
Log:
Add packaging for r-other-apmswapp (needs more predependencies)


Added: trunk/packages/R/r-other-apmswapp/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/changelog	2015-05-08 15:16:25 UTC (rev 19155)
@@ -0,0 +1,6 @@
+r-other-apmswapp (1.0-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+    Needs several other r packages: 'genefilter', 'seqinr', 'multtest', 'DESeq', 'aroma.light'
+
+ -- DMPT <debian-med-packaging at lists.alioth.debian.org>  Mon, 04 May 2015 10:49:06 +0200

Added: trunk/packages/R/r-other-apmswapp/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/compat	2015-05-08 15:16:25 UTC (rev 19155)
@@ -0,0 +1 @@
+9

Added: trunk/packages/R/r-other-apmswapp/trunk/debian/control
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/control	2015-05-08 15:16:25 UTC (rev 19155)
@@ -0,0 +1,30 @@
+Source: r-other-apmswapp
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev,
+               r-cran-gtools,
+               r-bioc-edger,
+               r-bioc-limma
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-other-apmswapp/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-other-apmswapp/trunk/
+Homepage: http://sourceforge.net/projects/apmswapp/
+
+Package: r-other-apmswapp
+Architecture: any
+Depends: ${misc:Depends},
+         r-cran-gtools,
+         r-bioc-edger,
+         r-bioc-limma
+Description: GNU R Pre- and Postprocessing For Affinity Purification Mass Spectrometry 
+ The reliable detection of protein-protein-interactions by affinity
+ purification mass spectrometry (AP-MS) is a crucial stepping stone for
+ the understanding of biological processes. The main challenge in a
+ typical AP-MS experiment is to separate true interaction proteins from
+ contaminants by contrasting counts of proteins binding to specific baits
+ with counts of negative controls.
+ 

Added: trunk/packages/R/r-other-apmswapp/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/copyright	2015-05-08 15:16:25 UTC (rev 19155)
@@ -0,0 +1,11 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: Martina Fischer <fischerm at rki.de>
+Source: http://sourceforge.net/projects/apmswapp/files/
+
+Files: *
+Copyright: 2013-2014 Martina Fischer <fischerm at rki.de>
+License: <license>
+
+Files: debian/*
+Copyright: 2015 Andreas Tille <tille at debian.org>
+License: <license>

Added: trunk/packages/R/r-other-apmswapp/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/rules	2015-05-08 15:16:25 UTC (rev 19155)
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+debRreposname := other
+include /usr/share/R/debian/r-cran.mk


Property changes on: trunk/packages/R/r-other-apmswapp/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/R/r-other-apmswapp/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/source/format	2015-05-08 15:16:25 UTC (rev 19155)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/R/r-other-apmswapp/trunk/debian/upstream/metadata
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/upstream/metadata	                        (rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/upstream/metadata	2015-05-08 15:16:25 UTC (rev 19155)
@@ -0,0 +1,11 @@
+Reference:
+  Author: Martina Fischer and Susann Zilkenat and Roman G. Gerlach and Samuel Wagner and Bernhard Y. Renard
+  Title: "Pre- and post-processing workflow for affinity purification mass spectrometry data"
+  Journal: Journal of Proteome Research
+  Year: 2014
+  Volume: 13
+  Number: 5
+  Pages: 2239-49
+  DOI: 10.1021/pr401249b
+  PMID: 24641689
+  URL: http://pubs.acs.org/doi/abs/10.1021/pr401249b

Added: trunk/packages/R/r-other-apmswapp/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/watch	2015-05-08 15:16:25 UTC (rev 19155)
@@ -0,0 +1,3 @@
+version=3
+
+http://sf.net/apmswapp/apmsWAPP_(\d[\d\.]+)\.(?:tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))