[med-svn] [r-bioc-biocgenerics] branch master updated (0432533 -> da579e0)

[Andreas Tille]

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tille pushed a change to branch master
in repository r-bioc-biocgenerics.

      from  0432533   Typo
       new  1de16c4   Imported Upstream version 0.14.0
       new  2b39e55   Merge tag 'upstream/0.14.0'
       new  0dcb6eb   New upstream version
       new  da579e0   Add missing r-cran-runit to debian/test/control

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                     |  27 +++++-----
 NAMESPACE                       |  26 ++++++++--
 R/S3-classes-as-S4-classes.R    |   2 +
 R/{image.R => fileName.R}       |   6 +--
 R/normarg-utils.R               |  10 ++++
 R/organism_species.R            |  16 ++++++
 R/plotPCA.R                     |   3 ++
 R/score.R                       |  10 ++++
 R/show-utils.R                  |  81 ++++++++++++++++++++++--------
 R/testPackage.R                 |  14 +++---
 R/{update.R => update-utils.R}  |   8 ++-
 debian/changelog                |  12 +++++
 debian/tests/control            |   2 +-
 inst/CITATION                   |  14 ++++++
 man/BiocGenerics-package.Rd     |  13 +++++
 man/S3-classes-as-S4-classes.Rd |   5 +-
 man/fileName.Rd                 |  51 +++++++++++++++++++
 man/organism_species.Rd         | 108 ++++++++++++++++++++++++++++++++++++++++
 man/{plotMA.Rd => plotPCA.Rd}   |  25 +++++-----
 man/rank.Rd                     |   4 +-
 man/score.Rd                    |  63 +++++++++++++++++++++++
 man/strand.Rd                   |   6 +++
 22 files changed, 439 insertions(+), 67 deletions(-)
 copy R/{image.R => fileName.R} (61%)
 create mode 100644 R/organism_species.R
 create mode 100644 R/plotPCA.R
 create mode 100644 R/score.R
 rename R/{update.R => update-utils.R} (86%)
 create mode 100644 inst/CITATION
 create mode 100644 man/fileName.Rd
 create mode 100644 man/organism_species.Rd
 copy man/{plotMA.Rd => plotPCA.Rd} (53%)
 create mode 100644 man/score.Rd

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