[med-svn] r19206 - in trunk/packages/R/r-bioc-biomart/trunk/debian: . tests

[Andreas Tille]

Author: tille
Date: 2015-05-11 09:27:25 +0000 (Mon, 11 May 2015)
New Revision: 19206

Added:
   trunk/packages/R/r-bioc-biomart/trunk/debian/tests/control
Removed:
   trunk/packages/R/r-bioc-biomart/trunk/debian/tests/control_unused
Modified:
   trunk/packages/R/r-bioc-biomart/trunk/debian/changelog
   trunk/packages/R/r-bioc-biomart/trunk/debian/tests/run-unit-test
Log:
New upstream version (+ activated autopkgtest)


Modified: trunk/packages/R/r-bioc-biomart/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-biomart/trunk/debian/changelog	2015-05-11 07:37:57 UTC (rev 19205)
+++ trunk/packages/R/r-bioc-biomart/trunk/debian/changelog	2015-05-11 09:27:25 UTC (rev 19206)
@@ -1,3 +1,9 @@
+r-bioc-biomart (2.24.0-1) unstable; urgency=medium
+
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Mon, 11 May 2015 09:54:32 +0200
+
 r-bioc-biomart (2.22.0-1) experimental; urgency=medium
 
   * New upstream version

Copied: trunk/packages/R/r-bioc-biomart/trunk/debian/tests/control (from rev 19201, trunk/packages/R/r-bioc-biomart/trunk/debian/tests/control_unused)
===================================================================
--- trunk/packages/R/r-bioc-biomart/trunk/debian/tests/control	                        (rev 0)
+++ trunk/packages/R/r-bioc-biomart/trunk/debian/tests/control	2015-05-11 09:27:25 UTC (rev 19206)
@@ -0,0 +1,5 @@
+Tests: run-unit-test
+# The following dependencies are not available so this autopkgtest is disabled
+Depends: @
+###, r-bioc-biocstyle, r-bioc-bsgenome.hsapiens.ucsc.hg19
+Restrictions: allow-stderr

Deleted: trunk/packages/R/r-bioc-biomart/trunk/debian/tests/control_unused
===================================================================
--- trunk/packages/R/r-bioc-biomart/trunk/debian/tests/control_unused	2015-05-11 07:37:57 UTC (rev 19205)
+++ trunk/packages/R/r-bioc-biomart/trunk/debian/tests/control_unused	2015-05-11 09:27:25 UTC (rev 19206)
@@ -1,4 +0,0 @@
-Tests: run-unit-test
-# The following dependencies are not available so this autopkgtest is disabled
-Depends: @, r-bioc-biocstyle, r-bioc-bsgenome.hsapiens.ucsc.hg19
-Restrictions: allow-stderr

Modified: trunk/packages/R/r-bioc-biomart/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-bioc-biomart/trunk/debian/tests/run-unit-test	2015-05-11 07:37:57 UTC (rev 19205)
+++ trunk/packages/R/r-bioc-biomart/trunk/debian/tests/run-unit-test	2015-05-11 09:27:25 UTC (rev 19206)
@@ -8,6 +8,7 @@
 cd $ADTTMP
 cp /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP
 find . -name "*.gz" -exec gunzip \{\} \;
+export LC_ALL=C
 for rnw in `ls *.[rR]nw` ; do
 rfile=`echo $rnw | sed 's/\.[rR]nw/.R/'`
 R --no-save <<EOT