[med-svn] r19212 - in trunk/packages/R/r-bioc-genomicalignments/trunk/debian: . patches upstream

[Andreas Tille]

Author: tille
Date: 2015-05-11 12:54:02 +0000 (Mon, 11 May 2015)
New Revision: 19212

Added:
   trunk/packages/R/r-bioc-genomicalignments/trunk/debian/upstream/
   trunk/packages/R/r-bioc-genomicalignments/trunk/debian/upstream/metadata
Modified:
   trunk/packages/R/r-bioc-genomicalignments/trunk/debian/changelog
   trunk/packages/R/r-bioc-genomicalignments/trunk/debian/control
   trunk/packages/R/r-bioc-genomicalignments/trunk/debian/patches/series
Log:
New upstream version, drop patch, add citation


Modified: trunk/packages/R/r-bioc-genomicalignments/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/trunk/debian/changelog	2015-05-11 12:26:38 UTC (rev 19211)
+++ trunk/packages/R/r-bioc-genomicalignments/trunk/debian/changelog	2015-05-11 12:54:02 UTC (rev 19212)
@@ -1,3 +1,11 @@
+r-bioc-genomicalignments (1.4.1-1) UNRELEASED; urgency=medium
+
+  * New upstream version
+  * Disable patch
+  * Citation
+
+ -- Andreas Tille <tille at debian.org>  Mon, 11 May 2015 14:37:31 +0200
+
 r-bioc-genomicalignments (1.2.0-1) experimental; urgency=medium
 
   * New upstrem version

Modified: trunk/packages/R/r-bioc-genomicalignments/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/trunk/debian/control	2015-05-11 12:26:38 UTC (rev 19211)
+++ trunk/packages/R/r-bioc-genomicalignments/trunk/debian/control	2015-05-11 12:54:02 UTC (rev 19212)
@@ -2,12 +2,11 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>
 Section: gnu-r
-Testsuite: autopkgtest
 Priority: optional
 Build-Depends: debhelper (>= 9),
                cdbs,
                r-base-dev,
-               r-bioc-rsamtools (>= 1.18.0),
+               r-bioc-rsamtools (>= 1.20.0),
                r-bioc-biocparallel (>= 1.0.0)
 Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-genomicalignments/trunk/

Modified: trunk/packages/R/r-bioc-genomicalignments/trunk/debian/patches/series
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/trunk/debian/patches/series	2015-05-11 12:26:38 UTC (rev 19211)
+++ trunk/packages/R/r-bioc-genomicalignments/trunk/debian/patches/series	2015-05-11 12:54:02 UTC (rev 19212)
@@ -1 +1 @@
-disable-testing-pasillaBamSubset.patch
+# disable-testing-pasillaBamSubset.patch

Added: trunk/packages/R/r-bioc-genomicalignments/trunk/debian/upstream/metadata
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/trunk/debian/upstream/metadata	                        (rev 0)
+++ trunk/packages/R/r-bioc-genomicalignments/trunk/debian/upstream/metadata	2015-05-11 12:54:02 UTC (rev 19212)
@@ -0,0 +1,12 @@
+Reference:
+  Author: Michael Lawrence and Wolfgang Huber and Hervé Pagès and Patrick Aboyoun and Marc Carlson and Robert Gentleman and Martin T. Morgan and Vincent J. Carey 
+  Title: Software for Computing and Annotating Genomic Ranges
+  Journal: PLoS Computational Biology
+  Year: 2013
+  Volume: 9
+  Number: 8
+  Pages: e1003118
+  DOI: 10.1371/journal.pcbi.1003118
+  PMID: 23950696
+  URL: http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003118
+  eprint: http://www.ploscompbiol.org/article/fetchObject.action?uri=info:doi/10.1371/journal.pcbi.1003118&representation=PDF