[med-svn] r19222 - in trunk/packages/R: . r-cran-seqinr r-cran-seqinr/trunk r-cran-seqinr/trunk/debian r-cran-seqinr/trunk/debian/source r-cran-seqinr/trunk/debian/upstream

Tue May 12 12:52:04 UTC 2015

Author: tille
Date: 2015-05-12 12:52:03 +0000 (Tue, 12 May 2015)
New Revision: 19222

Added:
   trunk/packages/R/r-cran-seqinr/
   trunk/packages/R/r-cran-seqinr/trunk/
   trunk/packages/R/r-cran-seqinr/trunk/debian/
   trunk/packages/R/r-cran-seqinr/trunk/debian/changelog
   trunk/packages/R/r-cran-seqinr/trunk/debian/compat
   trunk/packages/R/r-cran-seqinr/trunk/debian/control
   trunk/packages/R/r-cran-seqinr/trunk/debian/copyright
   trunk/packages/R/r-cran-seqinr/trunk/debian/rules
   trunk/packages/R/r-cran-seqinr/trunk/debian/source/
   trunk/packages/R/r-cran-seqinr/trunk/debian/source/format
   trunk/packages/R/r-cran-seqinr/trunk/debian/upstream/
   trunk/packages/R/r-cran-seqinr/trunk/debian/upstream/metadata
   trunk/packages/R/r-cran-seqinr/trunk/debian/watch
Log:
Add packaging for seqinr


Added: trunk/packages/R/r-cran-seqinr/trunk/debian/changelog
===================================================================

--- trunk/packages/R/r-cran-seqinr/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-cran-seqinr/trunk/debian/changelog	2015-05-12 12:52:03 UTC (rev 19222)
@@ -0,0 +1,5 @@
+r-cran-seqinr (3.1-3-1) UNRELEASED; urgency=medium
+
+  * Initial upload (Closes: #???)
+
+ -- Andreas Tille <tille at debian.org>  Sat, 09 May 2015 08:52:18 +0200

Added: trunk/packages/R/r-cran-seqinr/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-seqinr/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-cran-seqinr/trunk/debian/compat	2015-05-12 12:52:03 UTC (rev 19222)
@@ -0,0 +1 @@
+9

Added: trunk/packages/R/r-cran-seqinr/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-seqinr/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-cran-seqinr/trunk/debian/control	2015-05-12 12:52:03 UTC (rev 19222)
@@ -0,0 +1,22 @@
+Source: r-cran-seqinr
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>,
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-seqinr/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-seqinr/
+Homepage: http://cran.r-project.org/web/packages/seqinr
+
+Package: r-cran-seqinr
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         ${R:Depends}
+Description: GNU R Biological Sequences Retrieval and Analysis
+ Exploratory data analysis and data visualization for biological sequence
+ (DNA and protein) data. Includes also utilities for sequence data
+ management under the ACNUC system.

Added: trunk/packages/R/r-cran-seqinr/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-seqinr/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-cran-seqinr/trunk/debian/copyright	2015-05-12 12:52:03 UTC (rev 19222)
@@ -0,0 +1,27 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Simon Penel <simon.penel at univ-lyon1.fr>
+Upstream-Name: seqinr
+Source: http://cran.r-project.org/web/packages/seqinr/
+
+Files: *
+Copyright: 2007-2014 Delphine Charif, Jean R. Lobry, Anamaria Necsulea,
+                     Leonor Palmeira, Simon Penel, Guy Perriere
+License: GPL-2+
+
+Files: debian/*
+Copyright: 2015 Andreas Tille <tille at debian.org>
+License: GPL-2+
+
+License: GPL-2+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+ .
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+ .
+ On Debian systems, the complete text of the GNU General Public License
+ version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.

Added: trunk/packages/R/r-cran-seqinr/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-seqinr/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-cran-seqinr/trunk/debian/rules	2015-05-12 12:52:03 UTC (rev 19222)
@@ -0,0 +1,3 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk


Property changes on: trunk/packages/R/r-cran-seqinr/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/R/r-cran-seqinr/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-seqinr/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/R/r-cran-seqinr/trunk/debian/source/format	2015-05-12 12:52:03 UTC (rev 19222)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/R/r-cran-seqinr/trunk/debian/upstream/metadata
===================================================================
--- trunk/packages/R/r-cran-seqinr/trunk/debian/upstream/metadata	                        (rev 0)
+++ trunk/packages/R/r-cran-seqinr/trunk/debian/upstream/metadata	2015-05-12 12:52:03 UTC (rev 19222)
@@ -0,0 +1,9 @@
+Reference:
+  Author: Delphine Charif and Jean R. Lobry
+  Title: "SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis"
+  Booktitle: "Structural approaches to sequence evolution: Molecules, networks, populations"
+  Editor: Ugo Bastolla and Markus Porto and H. Eduardo Roman and Michele Vendruscolo
+  ISBN: 978-3-540-35305-8
+  Year: 2007
+  Pages: 207-232
+  URL: http://link.springer.com/book/10.1007%2F978-3-540-35306-5

Added: trunk/packages/R/r-cran-seqinr/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-seqinr/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-cran-seqinr/trunk/debian/watch	2015-05-12 12:52:03 UTC (rev 19222)
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/seqinr_([\d.-]*)\.tar.gz


