[med-svn] [subread] 02/02: d/tests/subread-tests: make exactSNP the last test as it fails more often and hides other tests on buildd d/rules: update flag order

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository subread.

commit cc433f2db1f4864c0f9f8a233d41e4b0234ea811
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Wed May 20 21:48:23 2015 +0200

    d/tests/subread-tests: make exactSNP the last test as it fails more often
     and hides other tests on buildd
    d/rules: update flag order
---
 debian/rules               | 2 +-
 debian/tests/subread-tests | 8 ++++----
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/debian/rules b/debian/rules
index 0f8ca33..2f986c8 100755
--- a/debian/rules
+++ b/debian/rules
@@ -12,7 +12,7 @@ utildir := $(CURDIR)/bin/utilities
 
 DEB_HOST_ARCH := $(shell dpkg-architecture -qDEB_HOST_ARCH)
 ifeq ($(DEB_HOST_ARCH),$(filter $(DEB_HOST_ARCH),amd64 i386))
-        export EXTRA_CC_FLAGS = -msse3 -mtune=generic
+        export EXTRA_CC_FLAGS = -mtune=generic -msse3
 else ifeq ($(DEB_HOST_ARCH),$(filter $(DEB_HOST_ARCH),arm64 armel armhf mips powerpc ppc64el s390x))
         export EXTRA_CC_FLAGS = -fsigned-char
 endif
diff --git a/debian/tests/subread-tests b/debian/tests/subread-tests
index 47f9b45..9975593 100755
--- a/debian/tests/subread-tests
+++ b/debian/tests/subread-tests
@@ -21,10 +21,6 @@ else
     WORKDIR=${TMPDIR}/adt_test
 fi
 
-
-cd $WORKDIR/exactSNP
-exactSNP -g ../chr901.fa -o test-out.VCF -i data/test-in.BAM -b 
-
 cd $WORKDIR/featureCounts
 featureCounts -a data/test-minimum.GTF -o test-minimum.FC data/test-minimum.sam
 
@@ -53,6 +49,10 @@ subread-align -i tmp/small1 --gzFASTQinput -r data/test-err-mut-r1.fq.gz \
     -R data/test-err-mut-r2.fq.gz -o tmp/test-tmp.sam6 -H -J \
     --rg-id MyTestGroup --rg SM:sample1 --rg TP:1 --rg XX:YY
 
+cd $WORKDIR/exactSNP
+exactSNP -g ../chr901.fa -o test-out.VCF -i data/test-in.BAM -b 
+
+
 if [ $# -eq 0 ]
 then
     rm -rf $TMPDIR

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/subread.git