[med-svn] [htslib] 01/07: Update symbols file. Note that there are missing symbols.
Charles Plessy
plessy at moszumanska.debian.org
Mon May 25 04:59:51 UTC 2015
This is an automated email from the git hooks/post-receive script.
plessy pushed a commit to branch debian/unstable
in repository htslib.
commit 4fc92f5aab173eedbefacef6a2514a5c2d903449
Author: Charles Plessy <plessy at riken.jp>
Date: Mon May 25 12:40:23 2015 +0900
Update symbols file. Note that there are missing symbols.
#MISSING: 1.2.1# cram_byte_array_stop_decode_char at Base 1.0
#MISSING: 1.2.1# cram_external_decode_block at Base 1.0
#MISSING: 1.2.1# cram_external_encode at Base 1.0
#MISSING: 1.2.1# download_and_open at Base 1.0
---
debian/libhts1.symbols | 39 ++++++++++++++++++++++++++++++++++-----
1 file changed, 34 insertions(+), 5 deletions(-)
diff --git a/debian/libhts1.symbols b/debian/libhts1.symbols
index e15b4e3..385db3b 100644
--- a/debian/libhts1.symbols
+++ b/debian/libhts1.symbols
@@ -3,6 +3,7 @@ libhts.so.1 libhts1 #MINVER#
MD5_Init at Base 1.0
MD5_Update at Base 1.0
_reader_next_line at Base 1.0
+ _regidx_build_index at Base 1.2.1
_vcf_parse_format at Base 1.0
bam_aux2A at Base 1.0
bam_aux2Z at Base 1.0
@@ -47,6 +48,7 @@ libhts.so.1 libhts1 #MINVER#
bcf_add_filter at Base 1.0
bcf_calc_ac at Base 1.0
bcf_clear at Base 1.0
+ bcf_copy at Base 1.2.1
bcf_destroy at Base 1.0
bcf_dup at Base 1.0
bcf_empty1 at Base 1.0
@@ -125,6 +127,7 @@ libhts.so.1 libhts1 #MINVER#
bcf_sr_set_regions at Base 1.0
bcf_sr_set_samples at Base 1.0
bcf_sr_set_targets at Base 1.0
+ bcf_sr_strerror at Base 1.2.1
bcf_subset at Base 1.0
bcf_subset_format at Base 1.0
bcf_sweep_bwd at Base 1.0
@@ -187,7 +190,7 @@ libhts.so.1 libhts1 #MINVER#
cram_byte_array_len_encode_init at Base 1.0
cram_byte_array_len_encode_store at Base 1.0
cram_byte_array_stop_decode_block at Base 1.0
- cram_byte_array_stop_decode_char at Base 1.0
+#MISSING: 1.2.1# cram_byte_array_stop_decode_char at Base 1.0
cram_byte_array_stop_decode_free at Base 1.0
cram_byte_array_stop_decode_init at Base 1.0
cram_byte_array_stop_encode at Base 1.0
@@ -195,6 +198,7 @@ libhts.so.1 libhts1 #MINVER#
cram_byte_array_stop_encode_init at Base 1.0
cram_byte_array_stop_encode_store at Base 1.0
cram_close at Base 1.0
+ cram_codec_to_id at Base 1.2.1
cram_compress_block at Base 1.0
cram_content_type2str at Base 1.0
cram_decode_TD at Base 1.0
@@ -204,6 +208,7 @@ libhts.so.1 libhts1 #MINVER#
cram_decode_slice_mt at Base 1.0
cram_decode_slice_thread at Base 1.0
cram_decoder_init at Base 1.0
+ cram_dependent_data_series at Base 1.2.1
cram_dopen at Base 1.0
cram_encode_compression_header at Base 1.0
cram_encode_container at Base 1.0
@@ -211,14 +216,16 @@ libhts.so.1 libhts1 #MINVER#
cram_encoder_init at Base 1.0
cram_encoding2str at Base 1.0
cram_eof at Base 1.0
- cram_external_decode_block at Base 1.0
+#MISSING: 1.2.1# cram_external_decode_block at Base 1.0
cram_external_decode_char at Base 1.0
cram_external_decode_free at Base 1.0
cram_external_decode_init at Base 1.0
cram_external_decode_int at Base 1.0
- cram_external_encode at Base 1.0
+#MISSING: 1.2.1# cram_external_encode at Base 1.0
+ cram_external_encode_char at Base 1.2.1
cram_external_encode_free at Base 1.0
cram_external_encode_init at Base 1.0
+ cram_external_encode_int at Base 1.2.1
cram_external_encode_store at Base 1.0
cram_flush at Base 1.0
cram_flush_container at Base 1.0
@@ -291,7 +298,7 @@ libhts.so.1 libhts1 #MINVER#
cram_write_file_def at Base 1.0
debug_buffer at Base 1.0
debug_buffers at Base 1.0
- download_and_open at Base 1.0
+#MISSING: 1.2.1# download_and_open at Base 1.0
expand_cache_path at Base 1.0
fai_build at Base 1.0
fai_build_core at Base 1.0
@@ -300,7 +307,7 @@ libhts.so.1 libhts1 #MINVER#
fai_load at Base 1.0
fai_read at Base 1.0
fai_save at Base 1.0
-#MISSING: 1.1# faidx_fetch_nseq at Base 1.0
+ faidx_fetch_nseq at Base 1.2.1
faidx_fetch_seq at Base 1.0
faidx_has_seq at Base 1.0
faidx_iseq at Base 1.1
@@ -318,6 +325,7 @@ libhts.so.1 libhts1 #MINVER#
hfile_oflags at Base 1.0
hflush at Base 1.0
hgetc2 at Base 1.0
+ hisremote at Base 1.2.1
hopen at Base 1.0
hopen_net at Base 1.0
hpeek at Base 1.0
@@ -327,9 +335,13 @@ libhts.so.1 libhts1 #MINVER#
hrec_add_idx at Base 1.0
hseek at Base 1.0
hts_close at Base 1.0
+ hts_detect_format at Base 1.2.1
hts_file_type at Base 1.0
+ hts_format_description at Base 1.2.1
hts_get_bgzfp at Base 1.0
+ hts_get_format at Base 1.2.1
hts_getline at Base 1.0
+ hts_hopen at Base 1.2.1
hts_idx_destroy at Base 1.0
hts_idx_finish at Base 1.0
hts_idx_get_meta at Base 1.0
@@ -352,6 +364,7 @@ libhts.so.1 libhts1 #MINVER#
hts_readlines at Base 1.0
hts_readlist at Base 1.0
hts_set_fai_filename at Base 1.0
+ hts_set_opt at Base 1.2.1
hts_set_threads at Base 1.0
hts_useek at Base 1.0
hts_utell at Base 1.0
@@ -444,8 +457,23 @@ libhts.so.1 libhts1 #MINVER#
pool_create at Base 1.0
pool_destroy at Base 1.0
pool_free at Base 1.0
+ rans_compress at Base 1.2.1
+ rans_compress_O0 at Base 1.2.1
+ rans_compress_O1 at Base 1.2.1
+ rans_uncompress at Base 1.2.1
+ rans_uncompress_O0 at Base 1.2.1
+ rans_uncompress_O1 at Base 1.2.1
refs2id at Base 1.0
refs_free at Base 1.0
+ regidx_destroy at Base 1.2.1
+ regidx_init at Base 1.2.1
+ regidx_insert at Base 1.2.1
+ regidx_nregs at Base 1.2.1
+ regidx_overlap at Base 1.2.1
+ regidx_parse_bed at Base 1.2.1
+ regidx_parse_tab at Base 1.2.1
+ regidx_seq_names at Base 1.2.1
+ regidx_seq_nregs at Base 1.2.1
sam_format1 at Base 1.0
sam_hdr_PG_ID at Base 1.0
sam_hdr_add at Base 1.0
@@ -479,6 +507,7 @@ libhts.so.1 libhts1 #MINVER#
sam_parse1 at Base 1.0
sam_read1 at Base 1.0
sam_write1 at Base 1.0
+ seq_nt16_int at Base 1.2.1
seq_nt16_str at Base 1.0
seq_nt16_table at Base 1.0
string_alloc at Base 1.0
--
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