[med-svn] [r-bioc-limma] branch master updated (b940c88 -> 5b44231)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository r-bioc-limma.

      from  b940c88   upload to unstable
       new  811b74f   Imported Upstream version 3.26.1+dfsg
       new  db1f709   Merge tag 'upstream/3.26.1+dfsg'
       new  5b44231   New upstream version

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                                    |   7 +-
 NAMESPACE                                      |  17 ++
 R/avearrays.R                                  |   5 +-
 R/barcodeplot.R                                |  10 +-
 R/decidetests.R                                |   2 +-
 R/geneset-camera.R                             |  19 +-
 R/geneset-fry.R                                |  40 ++--
 R/geneset-roast.R                              |  13 +-
 R/goana.R                                      |   2 +-
 R/kegga.R                                      |   2 +-
 R/lmfit.R                                      |  18 +-
 R/read.R                                       |  23 ++-
 R/sepchannel.R                                 |  14 +-
 R/tricubeMovingAverage.R                       |  36 +++-
 build/vignette.rds                             | Bin 231 -> 230 bytes
 debian/changelog                               |   6 +
 debian/patches/do_not_attempt_GO.db_test.patch | Bin 9095 -> 3182 bytes
 inst/doc/changelog.txt                         |  88 +++++++--
 inst/doc/intro.pdf                             | Bin 46191 -> 46191 bytes
 man/barcodeplot.Rd                             |  13 +-
 man/camera.Rd                                  |   5 +-
 man/controlStatus.Rd                           |   8 +-
 man/ebayes.Rd                                  |   4 +-
 man/genas.Rd                                   |   2 +-
 man/roast.Rd                                   |   2 +
 man/romer.Rd                                   |   6 +-
 man/tmixture.Rd                                |  26 +--
 man/tricubeMovingAverage.Rd                    |  28 +--
 tests/limma-Tests.R                            |   4 +-
 tests/limma-Tests.Rout.save                    | 246 +++++++++++++++----------
 {inst/doc => vignettes}/intro.Rnw              |   0
 31 files changed, 431 insertions(+), 215 deletions(-)
 copy {inst/doc => vignettes}/intro.Rnw (100%)

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