[med-svn] [r-bioc-edger] branch master updated (5af31dc -> 8aaa616)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository r-bioc-edger.

      from  5af31dc   New upstream version
       new  84aaf80   Imported Upstream version 3.12.0+dfsg
       new  bbe628c   Merge tag 'upstream/3.12.0+dfsg'
       new  996bb25   New upstream version
       new  8aaa616   Adapt patches

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                                     |   6 +-
 R/diffSpliceDGE.R                               | 210 +++++++++++----------
 R/estimateDisp.R                                |   4 +-
 debian/changelog                                |   6 +
 debian/control                                  |   4 +-
 debian/patches/do_not_attempt_locfit_test.patch |  32 ++--
 inst/NEWS.Rd                                    |  41 +++-
 inst/doc/edgeR.pdf                              | Bin 48664 -> 45781 bytes
 man/diffSpliceDGE.Rd                            |  58 +++---
 man/estimateDisp.Rd                             |  10 +-
 man/goana.Rd                                    |   2 +-
 man/plotSpliceDGE.Rd                            |  17 +-
 man/topSpliceDGE.Rd                             |  34 +++-
 tests/edgeR-Tests.Rout.save                     | 239 +++++-------------------
 vignettes/edgeR.Rnw                             |  48 -----
 15 files changed, 306 insertions(+), 405 deletions(-)
 delete mode 100755 vignettes/edgeR.Rnw

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