[med-svn] [fastqc] 02/04: Merge tag 'upstream/0.11.4+dfsg'

[Andreas Tille]

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tille pushed a commit to branch master
in repository fastqc.

commit 5ab490092c77003fb5f072bd2e5bd4bd3785d0b5
Merge: 7b9521e 0c37b8f
Author: Andreas Tille <tille at debian.org>
Date:   Tue Nov 3 14:35:22 2015 +0100

    Merge tag 'upstream/0.11.4+dfsg'
    
    Upstream version 0.11.4+dfsg

 Configuration/contaminant_list.txt                 |  2 +-
 INSTALL.txt                                        | 26 ++++++++++++-----
 README.txt                                         | 12 ++++----
 RELEASE_NOTES.txt                                  | 33 ++++++++++++++++++++++
 fastqc                                             | 11 ++++++++
 uk/ac/babraham/FastQC/Analysis/OfflineRunner.java  |  2 +-
 uk/ac/babraham/FastQC/FastQCApplication.java       |  2 +-
 .../babraham/FastQC/Modules/DuplicationLevel.java  |  2 ++
 .../FastQC/Modules/OverRepresentedSeqs.java        |  7 +++++
 .../FastQC/Modules/PerBaseQualityScores.java       | 10 ++++++-
 .../FastQC/Modules/PerTileQualityScores.java       | 10 ++++++-
 .../babraham/FastQC/Report/HTMLReportArchive.java  |  2 ++
 12 files changed, 102 insertions(+), 17 deletions(-)

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