[med-svn] r20404 - in trunk/packages/R/r-bioc-rtracklayer/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2015-11-06 10:53:07 +0000 (Fri, 06 Nov 2015)
New Revision: 20404

Modified:
   trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog
   trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control
   trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch
Log:
New upstream version


Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog	2015-11-06 10:49:48 UTC (rev 20403)
+++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog	2015-11-06 10:53:07 UTC (rev 20404)
@@ -1,3 +1,9 @@
+r-bioc-rtracklayer (1.30.1-1) unstable; urgency=medium
+
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Fri, 06 Nov 2015 09:01:53 +0100
+
 r-bioc-rtracklayer (1.28.10-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control	2015-11-06 10:49:48 UTC (rev 20403)
+++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control	2015-11-06 10:53:07 UTC (rev 20404)
@@ -8,7 +8,7 @@
                r-base-dev,
                r-cran-xml,
                r-cran-rcurl,
-               r-bioc-genomicalignments (>= 1.4.1)
+               r-bioc-genomicalignments (>= 1.6.0)
 Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-rtracklayer/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-rtracklayer/trunk/
@@ -21,7 +21,7 @@
          ${shlibs:Depends},
          r-cran-xml,
          r-cran-rcurl,
-         r-bioc-genomicalignments (>= 1.4.1)
+         r-bioc-genomicalignments (>= 1.6.0)
 Description: GNU R interface to genome browsers and their annotation tracks
  Extensible framework for interacting with multiple genome browsers
  (currently UCSC built-in) and manipulating annotation tracks in various

Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch	2015-11-06 10:49:48 UTC (rev 20403)
+++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch	2015-11-06 10:53:07 UTC (rev 20404)
@@ -3,17 +3,6 @@
 Description: If the systems includes zlib natively there is no point in
  requiring the import of zlibbioc
 
---- a/DESCRIPTION
-+++ b/DESCRIPTION
-@@ -5,7 +5,7 @@ Author: Michael Lawrence, Vince Carey, R
- Depends: R (>= 2.10), methods, GenomicRanges (>= 1.19.3)
- Imports: XML (>= 1.98-0), BiocGenerics (>= 0.13.8), S4Vectors (>=
-         0.5.11), IRanges (>= 2.1.41), XVector (>= 0.5.8), GenomeInfoDb
--        (>= 1.3.14), Biostrings (>= 2.33.14), zlibbioc, RCurl (>=
-+        (>= 1.3.14), Biostrings (>= 2.33.14), RCurl (>=
-         1.4-2), Rsamtools (>= 1.17.8), GenomicAlignments (>= 1.3.23),
-         tools
- Suggests: BSgenome (>= 1.33.4), humanStemCell, microRNA (>= 1.1.1),
 --- a/NAMESPACE
 +++ b/NAMESPACE
 @@ -6,7 +6,6 @@ useDynLib(rtracklayer, .registration = T
@@ -24,3 +13,14 @@
  
  ### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
  ### base packages
+--- a/DESCRIPTION
++++ b/DESCRIPTION
+@@ -5,7 +5,7 @@ Author: Michael Lawrence, Vince Carey, R
+ Depends: R (>= 2.10), methods, GenomicRanges (>= 1.21.20)
+ Imports: XML (>= 1.98-0), BiocGenerics (>= 0.13.8), S4Vectors (>=
+         0.7.11), IRanges (>= 2.3.7), XVector (>= 0.9.4), GenomeInfoDb
+-        (>= 1.3.14), Biostrings (>= 2.37.1), zlibbioc, RCurl (>=
++        (>= 1.3.14), Biostrings (>= 2.37.1), RCurl (>=
+         1.4-2), Rsamtools (>= 1.17.8), GenomicAlignments (>= 1.5.4),
+         tools
+ Suggests: BSgenome (>= 1.33.4), humanStemCell, microRNA (>= 1.1.1),