[med-svn] r20437 - in trunk/packages/R/r-bioc-genefilter/trunk/debian: . tests

[Andreas Tille]

Author: tille
Date: 2015-11-08 19:43:11 +0000 (Sun, 08 Nov 2015)
New Revision: 20437

Added:
   trunk/packages/R/r-bioc-genefilter/trunk/debian/README.test
   trunk/packages/R/r-bioc-genefilter/trunk/debian/examples
   trunk/packages/R/r-bioc-genefilter/trunk/debian/tests/
   trunk/packages/R/r-bioc-genefilter/trunk/debian/tests/control
   trunk/packages/R/r-bioc-genefilter/trunk/debian/tests/run-unit-test
Modified:
   trunk/packages/R/r-bioc-genefilter/trunk/debian/changelog
   trunk/packages/R/r-bioc-genefilter/trunk/debian/watch
Log:
New upstream version, add autopkgtest


Added: trunk/packages/R/r-bioc-genefilter/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-bioc-genefilter/trunk/debian/README.test	                        (rev 0)
+++ trunk/packages/R/r-bioc-genefilter/trunk/debian/README.test	2015-11-08 19:43:11 UTC (rev 20437)
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+To run the unit tests provided by the package you can do
+
+   sh run-unit-test
+
+in this directory.

Modified: trunk/packages/R/r-bioc-genefilter/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-genefilter/trunk/debian/changelog	2015-11-08 19:32:35 UTC (rev 20436)
+++ trunk/packages/R/r-bioc-genefilter/trunk/debian/changelog	2015-11-08 19:43:11 UTC (rev 20437)
@@ -1,3 +1,10 @@
+r-bioc-genefilter (1.52.0-1) unstable; urgency=medium
+
+  * New upstream version
+  * Add autopkgtest
+
+ -- Andreas Tille <tille at debian.org>  Sun, 08 Nov 2015 20:33:36 +0100
+
 r-bioc-genefilter (1.50.0-1) unstable; urgency=medium
 
   * Initial release (closes: #794279)

Added: trunk/packages/R/r-bioc-genefilter/trunk/debian/examples
===================================================================
--- trunk/packages/R/r-bioc-genefilter/trunk/debian/examples	                        (rev 0)
+++ trunk/packages/R/r-bioc-genefilter/trunk/debian/examples	2015-11-08 19:43:11 UTC (rev 20437)
@@ -0,0 +1 @@
+vignettes

Added: trunk/packages/R/r-bioc-genefilter/trunk/debian/tests/control
===================================================================
--- trunk/packages/R/r-bioc-genefilter/trunk/debian/tests/control	                        (rev 0)
+++ trunk/packages/R/r-bioc-genefilter/trunk/debian/tests/control	2015-11-08 19:43:11 UTC (rev 20437)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr

Added: trunk/packages/R/r-bioc-genefilter/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-bioc-genefilter/trunk/debian/tests/run-unit-test	                        (rev 0)
+++ trunk/packages/R/r-bioc-genefilter/trunk/debian/tests/run-unit-test	2015-11-08 19:43:11 UTC (rev 20437)
@@ -0,0 +1,18 @@
+#!/bin/sh -e
+oname=genefilter
+pkg=r-bioc-`echo $oname | tr [A-Z] [a-z]`
+
+if [ "$ADTTMP" = "" ] ; then
+  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP
+find . -name "*.gz" -exec gunzip \{\} \;
+for rnw in `ls *.[rRS]nw` ; do
+rfile=`echo $rnw | sed 's/\.[rRS]nw/.R/'`
+R --no-save <<EOT
+  Stangle("$rnw")
+  source("$rfile", echo=TRUE)
+EOT
+done
+rm -rf *

Modified: trunk/packages/R/r-bioc-genefilter/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-bioc-genefilter/trunk/debian/watch	2015-11-08 19:32:35 UTC (rev 20436)
+++ trunk/packages/R/r-bioc-genefilter/trunk/debian/watch	2015-11-08 19:43:11 UTC (rev 20437)
@@ -1,3 +1,3 @@
 version=3
-opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \
+opts=downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc? \
  http://www.bioconductor.org/packages/release/bioc/html/genefilter.html .*/genefilter_([\d\.]+)\.tar\.gz