[med-svn] [r-cran-vegan] branch master updated (ecc38fe -> fbf9355)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository r-cran-vegan.

      from  ecc38fe   Upload to unstable
       new  8fe98ea   Imported Upstream version 2.3-1
       new  89ad267   Merge tag 'upstream/2.3-1'
       new  a81bce5   New upstream version
       new  23223f6   add autopkgtest based on vignettes
       new  fbf9355   Upload to unstable

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                     |  10 +--
 MD5                             | 135 ++++++++++++++++++++--------------------
 NAMESPACE                       |   4 +-
 R/adonis.R                      |   6 +-
 R/alias.cca.R                   |   4 +-
 R/anosim.R                      |   3 +-
 R/anova.cca.R                   |  16 +++--
 R/anova.ccabyterm.R             |  70 ++++++++++++++-------
 R/anova.ccalist.R               |  30 +++++----
 R/anova.ccanull.R               |  21 ++++---
 R/biplot.rda.R                  |   7 ++-
 R/centroids.cca.R               |   2 +-
 R/factorfit.R                   |   3 +-
 R/mantel.R                      |   3 +-
 R/mantel.partial.R              |   3 +-
 R/metaMDS.R                     |  21 ++++---
 R/metaMDSdist.R                 |   1 +
 R/monoMDS.R                     |   2 +-
 R/mrpp.R                        |   3 +-
 R/mso.R                         |   4 +-
 R/oecosimu.R                    |  11 +++-
 R/ordiR2step.R                  |   5 ++
 R/ordiareatest.R                |   3 +-
 R/permustats.R                  |  37 +++++++----
 R/permutest.betadisper.R        |  10 +--
 R/permutest.cca.R               |   4 --
 R/plot.cca.R                    |  10 +--
 R/plot.prc.R                    |   9 +--
 R/points.cca.R                  |   9 +--
 R/predict.cca.R                 |  11 ++--
 R/predict.rda.R                 |  11 ++--
 R/print.cca.R                   |   2 +-
 R/print.permutest.cca.R         |   3 +-
 R/protest.R                     |   3 +-
 R/rarecurve.R                   |  10 +++
 R/scalingUtils.R                |  27 ++++++++
 R/scores.cca.R                  |  22 ++++---
 R/scores.rda.R                  |   6 +-
 R/simper.R                      |   3 +-
 R/summary.cca.R                 |  14 +++--
 R/summary.prc.R                 |   7 +--
 R/text.cca.R                    |   9 +--
 R/tolerance.cca.R               |   9 ++-
 R/vectorfit.R                   |   3 +-
 data/BCI.env.rda                | Bin 0 -> 337 bytes
 debian/README.test              |   8 +++
 debian/changelog                |   7 +++
 debian/docs                     |   2 +
 debian/examples                 |   1 +
 debian/tests/control            |   3 +
 debian/tests/run-unit-test      |  18 ++++++
 inst/NEWS.Rd                    |  79 +++++++++++++++++++++++
 inst/doc/FAQ-vegan.pdf          | Bin 148353 -> 148353 bytes
 inst/doc/NEWS.html              |  92 +++++++++++++++++++++++++++
 inst/doc/decision-vegan.pdf     | Bin 342516 -> 342248 bytes
 inst/doc/diversity-vegan.pdf    | Bin 365737 -> 365321 bytes
 inst/doc/intro-vegan.pdf        | Bin 235169 -> 234771 bytes
 man/BCI.Rd                      |  42 +++++++++----
 man/adipart.Rd                  |   6 +-
 man/anova.cca.Rd                |   5 +-
 man/biplot.rda.Rd               |  22 +++++--
 man/cca.Rd                      |   4 +-
 man/diversity.Rd                | 107 +++++--------------------------
 man/monoMDS.Rd                  |   2 +-
 man/permustats.Rd               |  12 ++--
 man/plot.cca.Rd                 |  75 ++++++++++++++--------
 man/prc.Rd                      |  23 +++++--
 man/predict.cca.Rd              |  16 +++--
 man/{diversity.Rd => rarefy.Rd} |  95 ++++------------------------
 man/specaccum.Rd                |  77 +++++++++++------------
 man/tolerance.Rd                |   8 ++-
 vignettes/FAQ-vegan.pdf         | Bin 148353 -> 148353 bytes
 vignettes/NEWS.html             |  92 +++++++++++++++++++++++++++
 vignettes/decision-vegan.tex    |  20 +++---
 vignettes/diversity-vegan.tex   |  80 ++++++++++++------------
 vignettes/intro-vegan.tex       |  50 +++++++--------
 76 files changed, 954 insertions(+), 578 deletions(-)
 create mode 100644 R/scalingUtils.R
 create mode 100644 data/BCI.env.rda
 create mode 100644 debian/README.test
 create mode 100644 debian/docs
 create mode 100644 debian/examples
 create mode 100644 debian/tests/control
 create mode 100644 debian/tests/run-unit-test
 copy man/{diversity.Rd => rarefy.Rd} (50%)

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