[med-svn] r20505 - in trunk/packages/minc/libminc/tags: . 2.3.00-2/debian 2.3.00-2/debian/patches
Steven Michael Robbins
smr at moszumanska.debian.org
Sun Nov 15 14:00:31 UTC 2015
Author: smr
Date: 2015-11-15 14:00:29 +0000 (Sun, 15 Nov 2015)
New Revision: 20505
Added:
trunk/packages/minc/libminc/tags/2.3.00-2/
trunk/packages/minc/libminc/tags/2.3.00-2/debian/changelog
trunk/packages/minc/libminc/tags/2.3.00-2/debian/patches/fix-endian-issues-label-data.patch
trunk/packages/minc/libminc/tags/2.3.00-2/debian/patches/series
Removed:
trunk/packages/minc/libminc/tags/2.3.00-2/debian/changelog
trunk/packages/minc/libminc/tags/2.3.00-2/debian/patches/series
Log:
[svn-buildpackage] Tagging libminc 2.3.00-2
Deleted: trunk/packages/minc/libminc/tags/2.3.00-2/debian/changelog
===================================================================
--- trunk/packages/minc/libminc/trunk/debian/changelog 2015-11-14 22:20:07 UTC (rev 20503)
+++ trunk/packages/minc/libminc/tags/2.3.00-2/debian/changelog 2015-11-15 14:00:29 UTC (rev 20505)
@@ -1,403 +0,0 @@
-libminc (2.3.00-1) unstable; urgency=medium
-
- * New upstream. Contains library source only. New minc-tools source
- package will build minc-tools.
- - Fixed to build with NetCDF 4.4. Closes: #793885.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 12 Sep 2015 19:20:21 -0500
-
-minc (2.2.00-6) unstable; urgency=medium
-
- * Apply two patches fixing Mahem test issues. Thanks to Martin
- Steghöfer <martin at steghoefer.eu>
- Closes: #716511, #716616
- * cme fix dpkg-control
-
- -- Andreas Tille <tille at debian.org> Mon, 06 Oct 2014 09:49:50 +0200
-
-minc (2.2.00-5) unstable; urgency=medium
-
- [ Gilles Filippini ]
- * rules: Support hdf5 1.8.13 new packaging layout. Closes: #756684.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 02 Aug 2014 12:06:50 -0500
-
-minc (2.2.00-4) unstable; urgency=medium
-
- * Apply patch provided by Alexander Ovchinnikov to build with clang
- (thanks to Alexander)
- Closes: 741744
- * cme fix dpkg-control
- * debian/copyright: DEP5
-
- -- Andreas Tille <tille at debian.org> Mon, 05 May 2014 11:21:48 +0200
-
-minc (2.2.00-3) unstable; urgency=low
-
- * patches/maxpathlen.patch: New. Work around missing MAXPATHLEN on
- hurd.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 14 Sep 2013 00:39:06 -0500
-
-minc (2.2.00-2) unstable; urgency=low
-
- * patches/pod_fix.diff: New. Fix POD documentation to comply with
- stricter parsing of perl 5.18. Closes: #719502.
-
- * rules: disable parallel build; causes tests to fail inexplicably.
-
- -- Steve M. Robbins <smr at debian.org> Fri, 13 Sep 2013 23:22:53 -0500
-
-minc (2.2.00-1) unstable; urgency=low
-
- * New upstream.
- * patches/hdfv2-fixes.patch: Remove. Applied upstream.
-
- * patches/makefile.patch: New. Fix build failure.
- * patches/acrnema-version.patch: New. Add proper versioning to
- libacr_nema.
-
- * rules: Use "--with autoreconf" since new patches affect Makefile.am.
-
- * rules:
- * control: SOVERSION bump to 3; new package name libminc2-3.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 13 Oct 2012 23:09:25 -0500
-
-minc (2.1.10-1) unstable; urgency=low
-
- * New upstream.
-
- * patches/03_mincview.diff: Remove. Script mincview rewritten to use
- Imagemagick
-
- * patches/decompress-whole-file.diff:
- * patches/read_file_names-refactor.patch: Remove. Applied upstream.
- * rules: Remove use of dh_autoreconf.
-
- * patches/hdfv2-fixes.patch: New. Ensure using HDF5 v2 API.
-
- * control: Remove dependency and build-dependency on csh.
-
- -- Steve M. Robbins <smr at debian.org> Sun, 26 Feb 2012 01:37:47 -0600
-
-minc (2.1.00-5) unstable; urgency=low
-
- * patches/mincaverage-pathmax.patch: Remove.
- * patches/read_file_names-refactor.patch: New. Refactored duplicated
- PATH_MAX-using code into library. Need to run autoreconf because
- Makefile.am changed.
-
- * rules: Fix errors and really disable tests on sparc.
-
- -- Steve M. Robbins <smr at debian.org> Mon, 20 Feb 2012 15:00:32 -0600
-
-minc (2.1.00-4) unstable; urgency=low
-
- * source/format: Set to 3.0 (quilt), so that patches are applied.
-
- * patches/mincaverage-pathmax.patch: New. Work around missing PATH_MAX
- definition; fixes FTBFS on hurd.
-
- * rules: Tests are buggy, but do work on most architectures. Disable on
- sparc.
-
- -- Steve M. Robbins <smr at debian.org> Sun, 19 Feb 2012 21:58:51 -0600
-
-minc (2.1.00-3) unstable; urgency=low
-
- * control: Switch to (serial) libhdf5-dev, to avoid conflict with serial
- netcdf. Closes: #658307.
-
- * control:
- * rules: Switch from cdbs to debhelper's dh (compat level 9).
-
- -- Steve M. Robbins <smr at debian.org> Sun, 19 Feb 2012 08:53:04 -0600
-
-minc (2.1.00-2) unstable; urgency=low
-
- * patches/decompress-whole-file.diff: New. Always decompress entire
- file to support compressed MINC2 files. Closes: #585676.
-
- -- Steve M. Robbins <smr at debian.org> Sun, 18 Dec 2011 20:47:03 -0600
-
-minc (2.1.00-1) unstable; urgency=low
-
- * New upstream.
-
- -- Steve M. Robbins <smr at debian.org> Tue, 17 Aug 2010 22:26:16 -0500
-
-minc (2.0.18+cvs20100518-1) unstable; urgency=low
-
- * Pull upstream CVS, contains fixes for netcdf 4. Closes: #577060,
- #581296.
-
- * control: replace libhdf5-*-dev (differing by architecture) by
- libhdf5-mpi-dev.
-
- -- Steve M. Robbins <smr at debian.org> Tue, 18 May 2010 22:53:30 -0500
-
-minc (2.0.18-1) unstable; urgency=low
-
- * New upstream version.
-
- -- Steve M. Robbins <smr at debian.org> Mon, 20 Jul 2009 05:24:57 -0500
-
-minc (2.0.17-1) unstable; urgency=low
-
- * New upstream version.
-
- * patches/04_manpages.diff:
- * debian/patches/05_parseargv.diff: Remove; applied upstream.
-
- -- Steve M. Robbins <smr at debian.org> Tue, 20 Jan 2009 19:37:41 -0600
-
-minc (2.0.16-4) unstable; urgency=low
-
- * debian/patches/05_parseargv.diff: New. Patch from upstream to fix arg
- parsing on 64bits. Closes: #510629. This was also the root cause of
- mincheader and mincdiff failing. Closes: #506276.
-
- * debian/control: Add ${misc:Depends}, since we use debhelper.
-
- * debian/rules: Do not install test code acr_test, dicom_test.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 03 Jan 2009 16:29:06 -0600
-
-minc (2.0.16-3) unstable; urgency=low
-
- * debian/control: Extend previous fix from build-depends to libminc-dev
- depends; i.e. use OpenMPI, except for certain architectures that it
- doesn't support; in the latter case, use LAM.
-
- -- Steve M. Robbins <smr at debian.org> Thu, 30 Oct 2008 01:10:55 -0500
-
-minc (2.0.16-2) unstable; urgency=low
-
- * debian/control: Use OpenMPI, except for certain architectures that it
- doesn't support; in the latter case, use LAM.
-
- -- Steve M. Robbins <smr at debian.org> Mon, 27 Oct 2008 01:11:21 -0500
-
-minc (2.0.16-1) unstable; urgency=low
-
- * New upstream release.
- - debian/patches/02_mincedit-no-escape-chars: Remove. Applied upstream.
-
- * debian/control: Switch dependencies from libhdf5-serial-dev to
- libhdf5-openmpi-dev.
- * debian/rules: Add CFLAGS=-I/usr/include/mpi to configure step so that
- mpi.h is found.
-
- * debian/control: Remove tetex-bin from build-depends (was alternative
- to texlive-latex-base). Update Standards-Version to 3.8.0 (no
- changes).
-
- * debian/patches/04_manpages.diff: Fix errors in manpages, mainly
- removal of trailing TAB characters.
-
- * debian/rules: Adhere to parallel keyword in DEB_BUILD_OPTIONS.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 11 Oct 2008 23:55:42 -0500
-
-minc (2.0.15-3) unstable; urgency=low
-
- [ Charles Plessy ]
- * debian/copyright: added upstream contact information.
-
- [ Steve M. Robbins ]
- * debian/patches/02_mincedit-no-escape-chars.diff: New. Patch mincedit
- to remove extraneous \n strings. Closes: 486048.
- * debian/control: Replace depends on netcdfg-dev by libnetcdf-dev.
-
- -- Steve M. Robbins <smr at debian.org> Thu, 19 Jun 2008 07:40:18 -0500
-
-minc (2.0.15-2) unstable; urgency=low
-
- [ David Paleino ]
- * debian/rules:
- - conditionally add -mieee on Alpha (Closes: #368263)
-
- [ Steve M. Robbins ]
- * debian/rules: Do not run the tests, since they are broken in many
- ways; e.g. int functions without a return statement, checking
- floating-point values without a tolerance, and some that require a
- list of files on the command line but are given none.
- Closes: #475808.
-
- -- Steve M. Robbins <smr at debian.org> Thu, 05 Jun 2008 09:24:59 -0500
-
-minc (2.0.15-1) unstable; urgency=low
-
- [ Charles Plessy ]
- * Changed the doc-base section according to the new policy.
-
- [ David Paleino ]
- * New upstream release
- * debian/patches/:
- - 01_mincedit-sensible-viewer.diff updated
- - 02_testdir-runtests.diff removed, it has been merged upstream
-
- -- Steve M. Robbins <smr at debian.org> Sat, 31 May 2008 05:53:26 -0500
-
-minc (2.0.14-2) unstable; urgency=low
-
- * rules: Don't install byte_swap or extract; can use "dd" instead of
- these tools. Closes: #459834.
-
- * control: Package minc-tools depends on libgetopt-tabular-perl.
- * rules: Don't install Tabular.pm.
- * Getopt-Tabular-0.3/Tabular.pm: Remove.
- * patches/04_progs-use-lib.diff: Remove.
- * copyright: Remove Getopt-Tabular license text.
-
- -- Steve M. Robbins <smr at debian.org> Fri, 11 Jan 2008 00:30:23 -0600
-
-minc (2.0.14-1) unstable; urgency=low
-
- * New upstream version. Closes: #450922.
-
- * control: Set Maintainer to debian-med-packaging.
- Add build-depends for libhdf5-serial-dev, texlive-latex-base.
- Rename package libminc0 --> libminc2-1.
- Rename package libminc0-dev --> libminc-dev.
- Package libminc-dev depends on libhdf5-serial-dev.
- Package minc-tools depends on imagemagick.
-
- * rules: Configure with --enable-minc2 and --enable-acr-nema.
-
- * Getopt-Tabular-0.3/Tabular.pm: New. Perl module required
- for mincpik and xfmflip. Closes: #457074.
-
- * patches/02_testdir-runtests.diff: New. Fix test scripts.
-
- * patches/03_mincview.diff: New. Use 'display' from ImageMagick rather
- than 'xv' to view images. Closes: #457072.
-
- * patches/04_progs-use-lib.diff: New. Add "use lib" declaration to find
- the private Getopt::Tabular.
-
- -- Steve M. Robbins <smr at debian.org> Sun, 06 Jan 2008 20:40:29 -0600
-
-minc (1.5-2) NEVER UPLOADED; urgency=low
-
- * Rewrite build system using cdbs.
- - patches/01_mincedit-sensible-viewer.diff: New. Obtained from
- existing Debian diff.
-
- * control: Build-depend on texlive-latex-base | tetex-bin, rather
- than just tetex-bin. Update to Standards-Version 3.7.3 (no change
- required). Use ${binary:Version} rather than ${Source-Version}
- for libminc0-dev dependency on libminc0. Add Homepage and Vcs-Svn
- header fields.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 29 Dec 2007 15:10:53 -0600
-
-minc (1.5-1) unstable; urgency=low
-
- * New upstream.
-
- -- Steve M. Robbins <smr at debian.org> Mon, 13 Nov 2006 23:26:13 -0600
-
-minc (1.4.1-1) unstable; urgency=low
-
- * New upstream.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 11 Nov 2006 22:14:54 -0600
-
-minc (1.4-4) unstable; urgency=low
-
- * testdir/create_grid_xfm.c: initialize minc_input_options properly.
- Closes: #352183.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 18 Feb 2006 17:33:37 -0500
-
-minc (1.4-3) unstable; urgency=low
-
- * Build-depend on csh. Closes: #351826.
-
- -- Steve M. Robbins <smr at debian.org> Tue, 7 Feb 2006 20:02:56 -0500
-
-minc (1.4-2) unstable; urgency=low
-
- * Rebuild to pick up new netcdf library, which changed due to
- C++ ABI transition (#346312).
-
- -- Steve M. Robbins <smr at debian.org> Sun, 5 Feb 2006 13:45:22 -0500
-
-minc (1.4-1) unstable; urgency=low
-
- * New upstream version.
-
- * Omit dependency on essential package debianutils (for sensible-editor).
- Closes: #316425.
-
- -- Steve M. Robbins <smr at debian.org> Sun, 3 Jul 2005 20:31:25 -0400
-
-minc (1.3-3) unstable; urgency=low
-
- * progs/mincedit/mincedit: use "sensible-editor" rather than "emacs".
- Closes: #292194.
-
- -- Steve M. Robbins <smr at debian.org> Thu, 27 Jan 2005 22:21:22 -0500
-
-minc (1.3-2) unstable; urgency=low
-
- * debian/rules: package minc-tools depends on libtext-format-perl
- Closes: #278840.
-
- -- Steve M. Robbins <smr at debian.org> Sun, 28 Nov 2004 14:33:06 -0500
-
-minc (1.3-1) unstable; urgency=low
-
- * New upstream version.
- Re-ran all auto*-tools machinery, as upstream used fairly old versions.
-
- * configure.in: Don't use AC_CONFIG_LINKS to generate link
- volume_io/Include/volume_io to directory volume_io/Include as
- autoconf 2.59 chokes on it. Use shell commands instead.
-
- * volume_io/Include/internal_volume_io.h: Do not include "config.h".
- * volume_io/Prog_utils/files.c: Do include "config.h".
- * volume_io/Prog_utils/time.c: Restore call to sysconf( _SC_CLK_TCK ),
- wrapped in #if HAVE_SYSCONF.
-
- -- Steve M. Robbins <smr at debian.org> Sun, 28 Nov 2004 14:22:03 -0500
-
-minc (1.2-1) unstable; urgency=low
-
- * New upstream version.
-
- * debian/control: minc-tools depend on netcdf-bin (for ncdump).
-
- -- Steve M. Robbins <smr at debian.org> Sat, 20 Dec 2003 11:22:09 -0500
-
-minc (1.1-1) unstable; urgency=low
-
- * New upstream.
- - build shared lib package
- - rename devel package to libminc0-dev
-
- -- Steve M. Robbins <smr at debian.org> Sat, 25 Jan 2003 18:25:04 -0500
-
-minc (1.0-2) unstable; urgency=low
-
- * libminc-dev: Depend on netcdfg-dev.
-
- * minc-tools: Use "csh|c-shell" in dependency line, remove dependency
- on "awk" on advice from lintian.
-
- * Update from upstream CVS.
-
- -- Steve M. Robbins <smr at debian.org> Wed, 11 Dec 2002 12:27:36 -0500
-
-minc (1.0-1) unstable; urgency=low
-
- * Initial Debian package. Closes: #153629.
-
- * Patches from upstream CVS:
- - libsrc/ParseArgv.h: declare as "extern C"
- - progs/mincstats/mincstats.c: fix segfault
-
- -- Steve M. Robbins <smr at debian.org> Mon, 29 Jul 2002 16:06:56 -0400
-
Copied: trunk/packages/minc/libminc/tags/2.3.00-2/debian/changelog (from rev 20504, trunk/packages/minc/libminc/trunk/debian/changelog)
===================================================================
--- trunk/packages/minc/libminc/tags/2.3.00-2/debian/changelog (rev 0)
+++ trunk/packages/minc/libminc/tags/2.3.00-2/debian/changelog 2015-11-15 14:00:29 UTC (rev 20505)
@@ -0,0 +1,410 @@
+libminc (2.3.00-2) unstable; urgency=medium
+
+ * patches/fix-endian-issues-label-data.patch: New. Upstream fix for
+ endianness problem. Closes: #802072.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 15 Nov 2015 07:34:14 -0600
+
+libminc (2.3.00-1) unstable; urgency=medium
+
+ * New upstream. Contains library source only. New minc-tools source
+ package will build minc-tools.
+ - Fixed to build with NetCDF 4.4. Closes: #793885.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 12 Sep 2015 19:20:21 -0500
+
+minc (2.2.00-6) unstable; urgency=medium
+
+ * Apply two patches fixing Mahem test issues. Thanks to Martin
+ Steghöfer <martin at steghoefer.eu>
+ Closes: #716511, #716616
+ * cme fix dpkg-control
+
+ -- Andreas Tille <tille at debian.org> Mon, 06 Oct 2014 09:49:50 +0200
+
+minc (2.2.00-5) unstable; urgency=medium
+
+ [ Gilles Filippini ]
+ * rules: Support hdf5 1.8.13 new packaging layout. Closes: #756684.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 02 Aug 2014 12:06:50 -0500
+
+minc (2.2.00-4) unstable; urgency=medium
+
+ * Apply patch provided by Alexander Ovchinnikov to build with clang
+ (thanks to Alexander)
+ Closes: 741744
+ * cme fix dpkg-control
+ * debian/copyright: DEP5
+
+ -- Andreas Tille <tille at debian.org> Mon, 05 May 2014 11:21:48 +0200
+
+minc (2.2.00-3) unstable; urgency=low
+
+ * patches/maxpathlen.patch: New. Work around missing MAXPATHLEN on
+ hurd.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 14 Sep 2013 00:39:06 -0500
+
+minc (2.2.00-2) unstable; urgency=low
+
+ * patches/pod_fix.diff: New. Fix POD documentation to comply with
+ stricter parsing of perl 5.18. Closes: #719502.
+
+ * rules: disable parallel build; causes tests to fail inexplicably.
+
+ -- Steve M. Robbins <smr at debian.org> Fri, 13 Sep 2013 23:22:53 -0500
+
+minc (2.2.00-1) unstable; urgency=low
+
+ * New upstream.
+ * patches/hdfv2-fixes.patch: Remove. Applied upstream.
+
+ * patches/makefile.patch: New. Fix build failure.
+ * patches/acrnema-version.patch: New. Add proper versioning to
+ libacr_nema.
+
+ * rules: Use "--with autoreconf" since new patches affect Makefile.am.
+
+ * rules:
+ * control: SOVERSION bump to 3; new package name libminc2-3.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 13 Oct 2012 23:09:25 -0500
+
+minc (2.1.10-1) unstable; urgency=low
+
+ * New upstream.
+
+ * patches/03_mincview.diff: Remove. Script mincview rewritten to use
+ Imagemagick
+
+ * patches/decompress-whole-file.diff:
+ * patches/read_file_names-refactor.patch: Remove. Applied upstream.
+ * rules: Remove use of dh_autoreconf.
+
+ * patches/hdfv2-fixes.patch: New. Ensure using HDF5 v2 API.
+
+ * control: Remove dependency and build-dependency on csh.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 26 Feb 2012 01:37:47 -0600
+
+minc (2.1.00-5) unstable; urgency=low
+
+ * patches/mincaverage-pathmax.patch: Remove.
+ * patches/read_file_names-refactor.patch: New. Refactored duplicated
+ PATH_MAX-using code into library. Need to run autoreconf because
+ Makefile.am changed.
+
+ * rules: Fix errors and really disable tests on sparc.
+
+ -- Steve M. Robbins <smr at debian.org> Mon, 20 Feb 2012 15:00:32 -0600
+
+minc (2.1.00-4) unstable; urgency=low
+
+ * source/format: Set to 3.0 (quilt), so that patches are applied.
+
+ * patches/mincaverage-pathmax.patch: New. Work around missing PATH_MAX
+ definition; fixes FTBFS on hurd.
+
+ * rules: Tests are buggy, but do work on most architectures. Disable on
+ sparc.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 19 Feb 2012 21:58:51 -0600
+
+minc (2.1.00-3) unstable; urgency=low
+
+ * control: Switch to (serial) libhdf5-dev, to avoid conflict with serial
+ netcdf. Closes: #658307.
+
+ * control:
+ * rules: Switch from cdbs to debhelper's dh (compat level 9).
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 19 Feb 2012 08:53:04 -0600
+
+minc (2.1.00-2) unstable; urgency=low
+
+ * patches/decompress-whole-file.diff: New. Always decompress entire
+ file to support compressed MINC2 files. Closes: #585676.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 18 Dec 2011 20:47:03 -0600
+
+minc (2.1.00-1) unstable; urgency=low
+
+ * New upstream.
+
+ -- Steve M. Robbins <smr at debian.org> Tue, 17 Aug 2010 22:26:16 -0500
+
+minc (2.0.18+cvs20100518-1) unstable; urgency=low
+
+ * Pull upstream CVS, contains fixes for netcdf 4. Closes: #577060,
+ #581296.
+
+ * control: replace libhdf5-*-dev (differing by architecture) by
+ libhdf5-mpi-dev.
+
+ -- Steve M. Robbins <smr at debian.org> Tue, 18 May 2010 22:53:30 -0500
+
+minc (2.0.18-1) unstable; urgency=low
+
+ * New upstream version.
+
+ -- Steve M. Robbins <smr at debian.org> Mon, 20 Jul 2009 05:24:57 -0500
+
+minc (2.0.17-1) unstable; urgency=low
+
+ * New upstream version.
+
+ * patches/04_manpages.diff:
+ * debian/patches/05_parseargv.diff: Remove; applied upstream.
+
+ -- Steve M. Robbins <smr at debian.org> Tue, 20 Jan 2009 19:37:41 -0600
+
+minc (2.0.16-4) unstable; urgency=low
+
+ * debian/patches/05_parseargv.diff: New. Patch from upstream to fix arg
+ parsing on 64bits. Closes: #510629. This was also the root cause of
+ mincheader and mincdiff failing. Closes: #506276.
+
+ * debian/control: Add ${misc:Depends}, since we use debhelper.
+
+ * debian/rules: Do not install test code acr_test, dicom_test.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 03 Jan 2009 16:29:06 -0600
+
+minc (2.0.16-3) unstable; urgency=low
+
+ * debian/control: Extend previous fix from build-depends to libminc-dev
+ depends; i.e. use OpenMPI, except for certain architectures that it
+ doesn't support; in the latter case, use LAM.
+
+ -- Steve M. Robbins <smr at debian.org> Thu, 30 Oct 2008 01:10:55 -0500
+
+minc (2.0.16-2) unstable; urgency=low
+
+ * debian/control: Use OpenMPI, except for certain architectures that it
+ doesn't support; in the latter case, use LAM.
+
+ -- Steve M. Robbins <smr at debian.org> Mon, 27 Oct 2008 01:11:21 -0500
+
+minc (2.0.16-1) unstable; urgency=low
+
+ * New upstream release.
+ - debian/patches/02_mincedit-no-escape-chars: Remove. Applied upstream.
+
+ * debian/control: Switch dependencies from libhdf5-serial-dev to
+ libhdf5-openmpi-dev.
+ * debian/rules: Add CFLAGS=-I/usr/include/mpi to configure step so that
+ mpi.h is found.
+
+ * debian/control: Remove tetex-bin from build-depends (was alternative
+ to texlive-latex-base). Update Standards-Version to 3.8.0 (no
+ changes).
+
+ * debian/patches/04_manpages.diff: Fix errors in manpages, mainly
+ removal of trailing TAB characters.
+
+ * debian/rules: Adhere to parallel keyword in DEB_BUILD_OPTIONS.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 11 Oct 2008 23:55:42 -0500
+
+minc (2.0.15-3) unstable; urgency=low
+
+ [ Charles Plessy ]
+ * debian/copyright: added upstream contact information.
+
+ [ Steve M. Robbins ]
+ * debian/patches/02_mincedit-no-escape-chars.diff: New. Patch mincedit
+ to remove extraneous \n strings. Closes: 486048.
+ * debian/control: Replace depends on netcdfg-dev by libnetcdf-dev.
+
+ -- Steve M. Robbins <smr at debian.org> Thu, 19 Jun 2008 07:40:18 -0500
+
+minc (2.0.15-2) unstable; urgency=low
+
+ [ David Paleino ]
+ * debian/rules:
+ - conditionally add -mieee on Alpha (Closes: #368263)
+
+ [ Steve M. Robbins ]
+ * debian/rules: Do not run the tests, since they are broken in many
+ ways; e.g. int functions without a return statement, checking
+ floating-point values without a tolerance, and some that require a
+ list of files on the command line but are given none.
+ Closes: #475808.
+
+ -- Steve M. Robbins <smr at debian.org> Thu, 05 Jun 2008 09:24:59 -0500
+
+minc (2.0.15-1) unstable; urgency=low
+
+ [ Charles Plessy ]
+ * Changed the doc-base section according to the new policy.
+
+ [ David Paleino ]
+ * New upstream release
+ * debian/patches/:
+ - 01_mincedit-sensible-viewer.diff updated
+ - 02_testdir-runtests.diff removed, it has been merged upstream
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 31 May 2008 05:53:26 -0500
+
+minc (2.0.14-2) unstable; urgency=low
+
+ * rules: Don't install byte_swap or extract; can use "dd" instead of
+ these tools. Closes: #459834.
+
+ * control: Package minc-tools depends on libgetopt-tabular-perl.
+ * rules: Don't install Tabular.pm.
+ * Getopt-Tabular-0.3/Tabular.pm: Remove.
+ * patches/04_progs-use-lib.diff: Remove.
+ * copyright: Remove Getopt-Tabular license text.
+
+ -- Steve M. Robbins <smr at debian.org> Fri, 11 Jan 2008 00:30:23 -0600
+
+minc (2.0.14-1) unstable; urgency=low
+
+ * New upstream version. Closes: #450922.
+
+ * control: Set Maintainer to debian-med-packaging.
+ Add build-depends for libhdf5-serial-dev, texlive-latex-base.
+ Rename package libminc0 --> libminc2-1.
+ Rename package libminc0-dev --> libminc-dev.
+ Package libminc-dev depends on libhdf5-serial-dev.
+ Package minc-tools depends on imagemagick.
+
+ * rules: Configure with --enable-minc2 and --enable-acr-nema.
+
+ * Getopt-Tabular-0.3/Tabular.pm: New. Perl module required
+ for mincpik and xfmflip. Closes: #457074.
+
+ * patches/02_testdir-runtests.diff: New. Fix test scripts.
+
+ * patches/03_mincview.diff: New. Use 'display' from ImageMagick rather
+ than 'xv' to view images. Closes: #457072.
+
+ * patches/04_progs-use-lib.diff: New. Add "use lib" declaration to find
+ the private Getopt::Tabular.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 06 Jan 2008 20:40:29 -0600
+
+minc (1.5-2) NEVER UPLOADED; urgency=low
+
+ * Rewrite build system using cdbs.
+ - patches/01_mincedit-sensible-viewer.diff: New. Obtained from
+ existing Debian diff.
+
+ * control: Build-depend on texlive-latex-base | tetex-bin, rather
+ than just tetex-bin. Update to Standards-Version 3.7.3 (no change
+ required). Use ${binary:Version} rather than ${Source-Version}
+ for libminc0-dev dependency on libminc0. Add Homepage and Vcs-Svn
+ header fields.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 29 Dec 2007 15:10:53 -0600
+
+minc (1.5-1) unstable; urgency=low
+
+ * New upstream.
+
+ -- Steve M. Robbins <smr at debian.org> Mon, 13 Nov 2006 23:26:13 -0600
+
+minc (1.4.1-1) unstable; urgency=low
+
+ * New upstream.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 11 Nov 2006 22:14:54 -0600
+
+minc (1.4-4) unstable; urgency=low
+
+ * testdir/create_grid_xfm.c: initialize minc_input_options properly.
+ Closes: #352183.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 18 Feb 2006 17:33:37 -0500
+
+minc (1.4-3) unstable; urgency=low
+
+ * Build-depend on csh. Closes: #351826.
+
+ -- Steve M. Robbins <smr at debian.org> Tue, 7 Feb 2006 20:02:56 -0500
+
+minc (1.4-2) unstable; urgency=low
+
+ * Rebuild to pick up new netcdf library, which changed due to
+ C++ ABI transition (#346312).
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 5 Feb 2006 13:45:22 -0500
+
+minc (1.4-1) unstable; urgency=low
+
+ * New upstream version.
+
+ * Omit dependency on essential package debianutils (for sensible-editor).
+ Closes: #316425.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 3 Jul 2005 20:31:25 -0400
+
+minc (1.3-3) unstable; urgency=low
+
+ * progs/mincedit/mincedit: use "sensible-editor" rather than "emacs".
+ Closes: #292194.
+
+ -- Steve M. Robbins <smr at debian.org> Thu, 27 Jan 2005 22:21:22 -0500
+
+minc (1.3-2) unstable; urgency=low
+
+ * debian/rules: package minc-tools depends on libtext-format-perl
+ Closes: #278840.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 28 Nov 2004 14:33:06 -0500
+
+minc (1.3-1) unstable; urgency=low
+
+ * New upstream version.
+ Re-ran all auto*-tools machinery, as upstream used fairly old versions.
+
+ * configure.in: Don't use AC_CONFIG_LINKS to generate link
+ volume_io/Include/volume_io to directory volume_io/Include as
+ autoconf 2.59 chokes on it. Use shell commands instead.
+
+ * volume_io/Include/internal_volume_io.h: Do not include "config.h".
+ * volume_io/Prog_utils/files.c: Do include "config.h".
+ * volume_io/Prog_utils/time.c: Restore call to sysconf( _SC_CLK_TCK ),
+ wrapped in #if HAVE_SYSCONF.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 28 Nov 2004 14:22:03 -0500
+
+minc (1.2-1) unstable; urgency=low
+
+ * New upstream version.
+
+ * debian/control: minc-tools depend on netcdf-bin (for ncdump).
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 20 Dec 2003 11:22:09 -0500
+
+minc (1.1-1) unstable; urgency=low
+
+ * New upstream.
+ - build shared lib package
+ - rename devel package to libminc0-dev
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 25 Jan 2003 18:25:04 -0500
+
+minc (1.0-2) unstable; urgency=low
+
+ * libminc-dev: Depend on netcdfg-dev.
+
+ * minc-tools: Use "csh|c-shell" in dependency line, remove dependency
+ on "awk" on advice from lintian.
+
+ * Update from upstream CVS.
+
+ -- Steve M. Robbins <smr at debian.org> Wed, 11 Dec 2002 12:27:36 -0500
+
+minc (1.0-1) unstable; urgency=low
+
+ * Initial Debian package. Closes: #153629.
+
+ * Patches from upstream CVS:
+ - libsrc/ParseArgv.h: declare as "extern C"
+ - progs/mincstats/mincstats.c: fix segfault
+
+ -- Steve M. Robbins <smr at debian.org> Mon, 29 Jul 2002 16:06:56 -0400
+
Copied: trunk/packages/minc/libminc/tags/2.3.00-2/debian/patches/fix-endian-issues-label-data.patch (from rev 20504, trunk/packages/minc/libminc/trunk/debian/patches/fix-endian-issues-label-data.patch)
===================================================================
--- trunk/packages/minc/libminc/tags/2.3.00-2/debian/patches/fix-endian-issues-label-data.patch (rev 0)
+++ trunk/packages/minc/libminc/tags/2.3.00-2/debian/patches/fix-endian-issues-label-data.patch 2015-11-15 14:00:29 UTC (rev 20505)
@@ -0,0 +1,140 @@
+From 166aca9f4c33bc5642047ceafd5c6bae0d888187 Mon Sep 17 00:00:00 2001
+From: "Robert D. Vincent" <robert.d.vincent at mcgill.ca>
+Date: Wed, 7 Oct 2015 22:06:38 +0000
+Subject: [PATCH] Fix endian issues with label data.
+
+---
+ libsrc2/m2util.c | 83 ++++++++++++++++++++++++++++++++++++++++++++------------
+ libsrc2/volume.c | 4 +--
+ 2 files changed, 66 insertions(+), 21 deletions(-)
+
+diff --git a/libsrc2/m2util.c b/libsrc2/m2util.c
+index a9367dc..5711208 100644
+--- a/libsrc2/m2util.c
++++ b/libsrc2/m2util.c
+@@ -1343,33 +1343,80 @@ void miinit ( void )
+ mi2_dbl_to_int ),"H5Tregister")
+ }
+
+-/** HDF5 type conversion function for converting an arbitrary integer type to
+-* an arbitrary enumerated type. The beauty part of this is that it is
+-* not necessary to actually perform any real conversion!
+-*/
+-static herr_t mi2_null_conv ( hid_t src_id,
+- hid_t dst_id,
+- H5T_cdata_t *cdata,
+- size_t nelements,
+- size_t buf_stride,
+- size_t bkg_stride,
+- void *buf_ptr,
+- void *bkg_ptr,
+- hid_t dset_xfer_plist )
++/** HDF5 type conversion function for converting among integer types.
++ * This handles byte-swapping for enumerated types where needed.
++ */
++static herr_t mi2_int_to_int ( hid_t src_id,
++ hid_t dst_id,
++ H5T_cdata_t *cdata,
++ size_t nelements,
++ size_t buf_stride,
++ size_t bkg_stride,
++ void *buf_ptr,
++ void *bkg_ptr,
++ hid_t dset_xfer_plist )
+ {
++ unsigned char *dst_ptr;
++ size_t dst_cnt;
++ size_t dst_sz;
++
+ switch ( cdata->command ) {
+ case H5T_CONV_INIT:
+ break;
+ case H5T_CONV_CONV:
++ dst_ptr = ( unsigned char * ) buf_ptr;
++ dst_sz = H5Tget_size( dst_id );
++
++ if (dst_sz != H5Tget_size( src_id )) {
++ return -1; /* Can't change size for now. */
++ }
++ if ( H5Tget_order ( dst_id ) == H5Tget_order ( src_id ) ) {
++ return 0; /* Nothing to do. */
++ }
++
++ /* The logic of HDF5 seems to be that if a stride is specified,
++ * both the source and destination pointers should advance by that
++ * amount. This seems wrong to me, but I've examined the HDF5 sources
++ * and that's what their own type converters do.
++ */
++ if ( buf_stride == 0 ) {
++ dst_cnt = dst_sz;
++ } else {
++ dst_cnt = buf_stride;
++ }
++
++ switch ( dst_sz ) {
++ case 8:
++ while ( nelements-- > 0 ) {
++ miswap8 ( dst_ptr );
++ dst_ptr += dst_cnt;
++ }
++ break;
++ case 4:
++ while ( nelements-- > 0 ) {
++ miswap4 ( dst_ptr );
++ dst_ptr += dst_cnt;
++ }
++ break;
++ case 2:
++ while ( nelements-- > 0 ) {
++ miswap2 ( dst_ptr );
++ dst_ptr += dst_cnt;
++ }
++ break;
++ case 1:
++ break;
++ default:
++ return (-1);
++ }
+ break;
++
+ case H5T_CONV_FREE:
+ break;
+
+ default:
+- /* Unknown command */
+- return ( -1 );
++ return (-1); /* Unknown command. */
+ }
+-
+ return ( 0 );
+ }
+
+@@ -1380,9 +1427,9 @@ in order to facilitate conversions from the integer to the enumerated type.
+ void miinit_enum ( hid_t type_id )
+ {
+ H5Tregister ( H5T_PERS_SOFT, "i2e", H5T_NATIVE_INT, type_id,
+- mi2_null_conv );
++ mi2_int_to_int );
+ H5Tregister ( H5T_PERS_SOFT, "e2i", type_id, H5T_NATIVE_INT,
+- mi2_null_conv );
++ mi2_int_to_int );
+ H5Tregister ( H5T_PERS_SOFT, "d2e", H5T_NATIVE_DOUBLE, type_id,
+ mi2_dbl_to_int );
+ H5Tregister ( H5T_PERS_SOFT, "e2d", type_id, H5T_NATIVE_DOUBLE,
+diff --git a/libsrc2/volume.c b/libsrc2/volume.c
+index b951d14..be8b7d1 100644
+--- a/libsrc2/volume.c
++++ b/libsrc2/volume.c
+@@ -1449,11 +1449,9 @@ int miopen_volume(const char *filename, int mode, mihandle_t *volume)
+ break;
+
+ case H5T_ENUM:
+- handle->mtype_id = H5Tcopy(handle->ftype_id);
++ handle->mtype_id = H5Tget_native_type(handle->ftype_id, H5T_DIR_ASCEND);
+ miinit_enum(handle->ftype_id);
+ miinit_enum(handle->mtype_id);
+- /* Set native order ---> is not allowed after order is set */
+- //H5Tset_order(handle->mtype_id, H5Tget_order(H5T_NATIVE_INT));
+ break;
+
+ default:
Deleted: trunk/packages/minc/libminc/tags/2.3.00-2/debian/patches/series
===================================================================
--- trunk/packages/minc/libminc/trunk/debian/patches/series 2015-11-14 22:20:07 UTC (rev 20503)
+++ trunk/packages/minc/libminc/tags/2.3.00-2/debian/patches/series 2015-11-15 14:00:29 UTC (rev 20505)
@@ -1,3 +0,0 @@
-build-using-system-find-dot-cmake
-fix-uselibminc-cmake
-use-system-nifti
Copied: trunk/packages/minc/libminc/tags/2.3.00-2/debian/patches/series (from rev 20504, trunk/packages/minc/libminc/trunk/debian/patches/series)
===================================================================
--- trunk/packages/minc/libminc/tags/2.3.00-2/debian/patches/series (rev 0)
+++ trunk/packages/minc/libminc/tags/2.3.00-2/debian/patches/series 2015-11-15 14:00:29 UTC (rev 20505)
@@ -0,0 +1,4 @@
+build-using-system-find-dot-cmake
+fix-uselibminc-cmake
+use-system-nifti
+fix-endian-issues-label-data.patch
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