[med-svn] [python-pyfaidx] branch upstream updated (448c1c4 -> db5a16e)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository python-pyfaidx.

      from  448c1c4   Imported Upstream version 0.4.2
       new  d4a7dcf   Imported Upstream version 0.4.5
       new  db5a16e   Imported Upstream version 0.4.5.1

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                         |      7 +
 .travis.yml                        |      3 +-
 README.rst                         |     72 +-
 pyfaidx/__init__.py                |     88 +-
 pyfaidx/cli.py                     |     29 +-
 setup.py                           |      3 +-
 tests/data/chr22.fasta             | 828192 ----------------------------------
 tests/data/chr22.vcf.gz            |    Bin 606571 -> 0 bytes
 tests/data/chr22.vcf.gz.tbi        |    Bin 21378 -> 0 bytes
 tests/data/download_gene_fasta.py  |     13 +-
 tests/test_FastaRecord.py          |      8 +-
 tests/test_FastaVariant.py         |     10 +-
 tests/test_feature_bounds_check.py |     25 +
 tests/test_sequence_class.py       |      6 -
 14 files changed, 205 insertions(+), 828251 deletions(-)
 create mode 100644 .gitignore
 delete mode 100644 tests/data/chr22.fasta
 delete mode 100644 tests/data/chr22.vcf.gz
 delete mode 100644 tests/data/chr22.vcf.gz.tbi

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