[med-svn] [python-mne] branch master updated (a9e829c -> e9721ee)
Yaroslav Halchenko
debian at onerussian.com
Wed Nov 25 16:20:17 UTC 2015
This is an automated email from the git hooks/post-receive script.
yoh pushed a change to branch master
in repository python-mne.
from a9e829c forgotten import -- was already in upstream before picked up commit
new 9b5da07 Imported Upstream version 0.10+dfsg
new 1bff75a Merge tag 'upstream/0.10+dfsg'
new f236919 New version. Update packaging.
new 8655e3f Added debian folder.
new 1c70a88 Imported Upstream version 0.10.1+dfsg
new 3309f00 Merge tag 'upstream/0.10.1+dfsg'
new 87a79fc Update to maint/10.1.
new a252b45 Merge branch 'master' into debian-origin
new a071e9f debian/patches - dropped CPed from upstream changeset_9c7ef6d1*
new e7dff51 Adjusted template DEP3 header for paths patch
new a9ffc17 Rename paths patch to have deb_ prefix to signal its specificity to Debian
new 1553e57 no place for debian/files within VCS etc -- autogenerated
new e9721ee Adjusted years in the copyright
The 13 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
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examples/README.txt | 11 +-
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.../connectivity/plot_mne_inverse_psi_visual.py | 15 +-
examples/connectivity/plot_sensor_connectivity.py | 27 +-
examples/datasets/plot_brainstorm_data.py | 74 +
examples/datasets/plot_megsim_data.py | 7 +-
examples/datasets/plot_megsim_data_single_trial.py | 5 +-
examples/datasets/plot_spm_faces_dataset.py | 34 +-
examples/decoding/plot_decoding_csp_eeg.py | 33 +-
examples/decoding/plot_decoding_csp_space.py | 17 +-
examples/decoding/plot_decoding_sensors.py | 63 +-
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examples/{ => forward}/plot_read_bem_surfaces.py | 13 +-
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examples/forward/plot_source_space_morphing.py | 68 +
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examples/inverse/plot_covariance_whitening_dspm.py | 160 +
examples/inverse/plot_dics_beamformer.py | 13 +-
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mne/channels/interpolation.py | 207 +
mne/channels/layout.py | 825 +++
mne/channels/montage.py | 533 ++
.../channels/tests}/__init__.py | 0
mne/channels/tests/test_channels.py | 152 +
mne/channels/tests/test_interpolation.py | 120 +
mne/channels/tests/test_layout.py | 380 ++
mne/channels/tests/test_montage.py | 209 +
mne/chpi.py | 440 ++
mne/commands/__init__.py | 1 +
mne/commands/mne_browse_raw.py | 43 +-
mne/commands/mne_bti2fiff.py | 35 +-
mne/commands/mne_clean_eog_ecg.py | 100 +-
mne/commands/mne_compare_fiff.py | 27 +
mne/commands/mne_compute_proj_ecg.py | 18 +-
mne/commands/mne_compute_proj_eog.py | 92 +-
mne/commands/mne_coreg.py | 9 +-
mne/commands/mne_flash_bem.py | 90 +
mne/commands/mne_flash_bem_model.py | 37 +-
mne/commands/mne_freeview_bem_surfaces.py | 92 +
mne/commands/mne_kit2fiff.py | 10 +-
mne/commands/mne_make_scalp_surfaces.py | 135 +-
mne/commands/mne_maxfilter.py | 110 +-
mne/commands/mne_report.py | 49 +-
mne/commands/mne_surf2bem.py | 14 +-
mne/commands/mne_watershed_bem.py | 62 +
mne/{layouts => commands}/tests/__init__.py | 0
mne/commands/tests/test_commands.py | 244 +
mne/commands/utils.py | 27 +-
mne/connectivity/effective.py | 13 +-
mne/connectivity/spectral.py | 225 +-
mne/connectivity/tests/test_effective.py | 12 +-
mne/connectivity/tests/test_spectral.py | 131 +-
mne/coreg.py | 232 +-
mne/cov.py | 1358 ++++-
mne/cuda.py | 302 +-
mne/data/FreeSurferColorLUT.txt | 1397 +++++
mne/data/coil_def.dat | 47 +-
mne/data/coil_def_Elekta.dat | 70 +
mne/data/image/custom_layout.lout | 24 +
mne/data/image/mni_brain.gif | Bin 0 -> 12051 bytes
mne/datasets/__init__.py | 3 +
mne/datasets/_fake/__init__.py | 4 +
mne/datasets/_fake/_fake.py | 25 +
mne/datasets/brainstorm/__init__.py | 4 +
mne/datasets/brainstorm/bst_auditory.py | 60 +
mne/datasets/brainstorm/bst_raw.py | 59 +
mne/datasets/brainstorm/bst_resting.py | 51 +
mne/datasets/eegbci/eegbci.py | 72 +-
mne/datasets/megsim/megsim.py | 75 +-
mne/datasets/megsim/urls.py | 36 +-
mne/datasets/sample/__init__.py | 3 +-
mne/datasets/sample/sample.py | 31 +-
mne/datasets/somato/__init__.py | 2 +-
mne/datasets/somato/somato.py | 32 +-
mne/datasets/spm_face/__init__.py | 2 +-
mne/datasets/spm_face/spm_data.py | 30 +-
mne/datasets/testing/__init__.py | 4 +
mne/datasets/testing/_testing.py | 47 +
.../numpy_ext => mne/datasets/tests}/__init__.py | 0
mne/datasets/tests/test_datasets.py | 46 +
mne/datasets/utils.py | 294 +-
mne/decoding/__init__.py | 7 +-
mne/decoding/base.py | 625 ++
mne/decoding/csp.py | 408 +-
mne/decoding/ems.py | 2 +-
mne/decoding/tests/test_csp.py | 31 +-
mne/decoding/tests/test_ems.py | 6 +-
mne/decoding/tests/test_time_gen.py | 303 +-
.../{test_classifier.py => test_transformer.py} | 63 +-
mne/decoding/time_gen.py | 1360 ++++-
mne/decoding/{classifier.py => transformer.py} | 201 +-
mne/defaults.py | 54 +
mne/dipole.py | 706 ++-
mne/epochs.py | 2525 ++++----
mne/event.py | 104 +-
mne/evoked.py | 936 +--
mne/externals/FieldTrip.py | 4 +-
mne/externals/__init__.py | 3 +-
mne/externals/h5io/__init__.py | 6 +
mne/externals/h5io/_h5io.py | 297 +
mne/fiff/__init__.py | 79 -
mne/filter.py | 518 +-
mne/fixes.py | 399 +-
mne/forward/__init__.py | 13 +-
mne/forward/_compute_forward.py | 878 ++-
mne/forward/_field_interpolation.py | 195 +-
mne/forward/_lead_dots.py | 270 +-
mne/forward/_make_forward.py | 682 ++-
mne/forward/forward.py | 503 +-
mne/forward/tests/test_field_interpolation.py | 126 +-
mne/forward/tests/test_forward.py | 157 +-
mne/forward/tests/test_make_forward.py | 267 +-
mne/gui/__init__.py | 16 +-
mne/gui/_coreg_gui.py | 93 +-
mne/gui/_fiducials_gui.py | 36 +-
mne/gui/_file_traits.py | 151 +-
mne/gui/_kit2fiff_gui.py | 184 +-
mne/gui/_marker_gui.py | 113 +-
mne/gui/_viewer.py | 52 +-
mne/gui/tests/test_coreg_gui.py | 52 +-
mne/gui/tests/test_fiducials_gui.py | 25 +-
mne/gui/tests/test_file_traits.py | 61 +-
mne/gui/tests/test_kit2fiff_gui.py | 30 +-
mne/gui/tests/test_marker_gui.py | 21 +-
mne/inverse_sparse/_gamma_map.py | 50 +-
mne/inverse_sparse/mxne_debiasing.py | 12 +-
mne/inverse_sparse/mxne_inverse.py | 317 +-
mne/inverse_sparse/mxne_optim.py | 712 ++-
mne/inverse_sparse/tests/test_gamma_map.py | 37 +-
mne/inverse_sparse/tests/test_mxne_inverse.py | 83 +-
mne/inverse_sparse/tests/test_mxne_optim.py | 181 +-
mne/io/__init__.py | 64 +-
mne/io/array/array.py | 31 +-
mne/io/array/tests/test_array.py | 34 +-
mne/io/base.py | 1397 +++--
mne/io/brainvision/__init__.py | 2 +-
mne/io/brainvision/brainvision.py | 676 +-
mne/io/brainvision/tests/data/test.hpts | 46 +
mne/io/brainvision/tests/data/test.vmrk | 5 +-
mne/io/brainvision/tests/data/test_highpass.vhdr | 142 +
mne/io/brainvision/tests/test_brainvision.py | 136 +-
mne/io/bti/bti.py | 892 +--
mne/io/bti/constants.py | 12 +-
mne/io/bti/read.py | 97 +-
mne/io/bti/tests/test_bti.py | 228 +-
mne/io/bti/transforms.py | 102 -
mne/io/constants.py | 64 +-
mne/io/ctf.py | 20 +-
mne/io/diff.py | 2 +-
mne/io/edf/__init__.py | 2 +-
mne/io/edf/edf.py | 783 +--
mne/io/edf/tests/data/biosemi.hpts | 8 +-
mne/io/edf/tests/data/test_edf_eeglab.mat | Bin 799941 -> 524875 bytes
mne/io/edf/tests/data/test_edf_stim_channel.edf | Bin 0 -> 68056 bytes
mne/io/edf/tests/data/test_edf_stim_channel.txt | 717 +++
mne/io/edf/tests/data/test_uneven_samp.edf | Bin 0 -> 25584 bytes
mne/io/edf/tests/data/test_uneven_samp.mat | Bin 0 -> 40487 bytes
mne/io/edf/tests/test_edf.py | 187 +-
mne/io/egi/egi.py | 222 +-
mne/io/egi/tests/test_egi.py | 24 +-
mne/io/fiff/__init__.py | 3 +-
mne/io/fiff/raw.py | 465 +-
mne/io/fiff/tests/test_raw.py | 504 +-
mne/io/kit/__init__.py | 10 +-
mne/io/kit/constants.py | 11 +-
mne/io/kit/coreg.py | 94 +-
mne/io/kit/kit.py | 959 +--
mne/io/kit/tests/data/test-epoch.raw | Bin 0 -> 138388 bytes
mne/io/kit/tests/data/test-eve.txt | 2 +
mne/io/kit/tests/test_coreg.py | 54 +-
mne/io/kit/tests/test_kit.py | 69 +-
mne/io/meas_info.py | 751 ++-
mne/io/open.py | 62 +-
mne/io/pick.py | 286 +-
mne/io/proc_history.py | 290 +
mne/io/proj.py | 173 +-
mne/io/reference.py | 387 ++
mne/io/tag.py | 127 +-
mne/io/tests/data/test_ica.lout | 6 +-
mne/io/tests/test_apply_function.py | 58 +
mne/io/tests/test_compensator.py | 5 +-
mne/io/tests/test_meas_info.py | 153 +-
mne/io/tests/test_pick.py | 177 +-
mne/io/tests/test_proc_history.py | 47 +
mne/io/tests/test_raw.py | 51 +
mne/io/tests/test_reference.py | 307 +
mne/io/tree.py | 24 +-
mne/io/write.py | 85 +-
mne/label.py | 505 +-
mne/layouts/__init__.py | 2 -
mne/layouts/layout.py | 563 --
mne/layouts/tests/test_layout.py | 218 -
mne/minimum_norm/__init__.py | 3 +-
mne/minimum_norm/inverse.py | 710 ++-
mne/minimum_norm/psf_ctf.py | 93 +-
mne/minimum_norm/tests/test_inverse.py | 366 +-
mne/minimum_norm/tests/test_psf_ctf.py | 110 +-
mne/minimum_norm/tests/test_snr.py | 42 +
mne/minimum_norm/tests/test_time_frequency.py | 91 +-
mne/minimum_norm/time_frequency.py | 370 +-
mne/misc.py | 16 +-
mne/mixed_norm/__init__.py | 7 -
mne/parallel.py | 22 +-
mne/preprocessing/__init__.py | 7 +-
mne/preprocessing/bads.py | 16 +-
mne/preprocessing/ctps_.py | 2 +-
mne/preprocessing/ecg.py | 98 +-
mne/preprocessing/eog.py | 57 +-
mne/preprocessing/ica.py | 1090 ++--
mne/preprocessing/infomax_.py | 107 +-
mne/preprocessing/maxfilter.py | 80 +-
mne/preprocessing/maxwell.py | 644 ++
mne/preprocessing/peak_finder.py | 4 +-
mne/preprocessing/ssp.py | 27 +-
mne/preprocessing/stim.py | 143 +-
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.../eeglab_extended_infomax_results_meg_data.mat | Bin 0 -> 403 bytes
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mne/preprocessing/tests/test_eeglab_infomax.py | 204 +
mne/preprocessing/tests/test_ica.py | 119 +-
mne/preprocessing/tests/test_infomax.py | 153 +-
mne/preprocessing/tests/test_maxwell.py | 256 +
mne/preprocessing/tests/test_ssp.py | 22 +-
mne/preprocessing/tests/test_stim.py | 104 +-
mne/preprocessing/tests/test_xdawn.py | 145 +
mne/preprocessing/xdawn.py | 484 ++
mne/proj.py | 83 +-
mne/realtime/client.py | 16 +-
mne/realtime/epochs.py | 171 +-
mne/realtime/fieldtrip_client.py | 71 +-
mne/realtime/mockclient.py | 39 +-
mne/realtime/stim_server_client.py | 21 +-
mne/realtime/tests/test_fieldtrip_client.py | 71 +-
mne/realtime/tests/test_mockclient.py | 100 +-
mne/realtime/tests/test_stim_client_server.py | 45 +-
mne/report.py | 1044 +++-
mne/selection.py | 15 +-
mne/simulation/__init__.py | 9 +-
mne/simulation/evoked.py | 155 +-
mne/simulation/metrics.py | 68 +
mne/simulation/raw.py | 569 ++
mne/simulation/source.py | 135 +-
mne/simulation/tests/test_evoked.py | 57 +-
mne/simulation/tests/test_metrics.py | 52 +
mne/simulation/tests/test_raw.py | 248 +
mne/simulation/tests/test_source.py | 130 +-
mne/source_estimate.py | 738 ++-
mne/source_space.py | 1259 +++-
mne/stats/__init__.py | 5 +-
mne/stats/cluster_level.py | 240 +-
mne/stats/multi_comp.py | 4 +-
mne/stats/parametric.py | 211 +-
mne/stats/regression.py | 210 +-
mne/stats/tests/test_cluster_level.py | 222 +-
mne/stats/tests/test_multi_comp.py | 5 +-
mne/stats/tests/test_parametric.py | 122 +-
mne/stats/tests/test_regression.py | 65 +-
mne/surface.py | 552 +-
mne/tests/__init__.py | 3 -
mne/tests/test_bem.py | 264 +
mne/tests/test_channels.py | 109 -
mne/tests/test_chpi.py | 168 +
mne/tests/test_coreg.py | 68 +-
mne/tests/test_cov.py | 286 +-
mne/tests/test_defaults.py | 22 +
mne/tests/test_dipole.py | 262 +-
mne/tests/test_docstring_parameters.py | 161 +
mne/tests/test_epochs.py | 905 ++-
mne/tests/test_event.py | 86 +-
mne/tests/test_evoked.py | 163 +-
mne/tests/test_filter.py | 245 +-
mne/tests/test_fixes.py | 66 +-
mne/tests/test_hdf5.py | 26 -
mne/tests/test_import_nesting.py | 53 +
mne/tests/test_label.py | 382 +-
mne/tests/test_proj.py | 90 +-
mne/tests/test_report.py | 275 +-
mne/tests/test_source_estimate.py | 204 +-
mne/tests/test_source_space.py | 476 +-
mne/tests/test_surface.py | 105 +-
mne/tests/test_transforms.py | 163 +-
mne/tests/test_utils.py | 334 +-
mne/time_frequency/__init__.py | 7 +-
mne/time_frequency/_stockwell.py | 255 +
mne/time_frequency/ar.py | 75 +-
mne/time_frequency/csd.py | 14 +-
mne/time_frequency/multitaper.py | 35 +-
mne/time_frequency/psd.py | 142 +-
mne/time_frequency/stft.py | 29 +-
mne/time_frequency/tests/test_ar.py | 21 +-
mne/time_frequency/tests/test_csd.py | 22 +-
mne/time_frequency/tests/test_multitaper.py | 4 +-
mne/time_frequency/tests/test_psd.py | 97 +-
mne/time_frequency/tests/test_stft.py | 22 +-
mne/time_frequency/tests/test_stockwell.py | 96 +
mne/time_frequency/tests/test_tfr.py | 235 +-
mne/time_frequency/tfr.py | 820 ++-
mne/transforms.py | 436 +-
mne/utils.py | 1167 ++--
mne/viz/_3d.py | 516 +-
mne/viz/__init__.py | 32 +-
mne/viz/circle.py | 32 +-
mne/viz/decoding.py | 236 +
mne/viz/epochs.py | 1390 ++++-
mne/viz/evoked.py | 579 +-
mne/viz/ica.py | 489 +-
mne/viz/misc.py | 119 +-
mne/viz/montage.py | 58 +
mne/viz/raw.py | 770 +--
mne/viz/tests/test_3d.py | 167 +-
mne/viz/tests/test_circle.py | 4 +-
mne/viz/tests/test_decoding.py | 124 +
mne/viz/tests/test_epochs.py | 110 +-
mne/viz/tests/test_evoked.py | 57 +-
mne/viz/tests/test_ica.py | 120 +-
mne/viz/tests/test_misc.py | 65 +-
mne/viz/tests/test_montage.py | 30 +
mne/viz/tests/test_raw.py | 90 +-
mne/viz/tests/test_topo.py | 58 +-
mne/viz/tests/test_topomap.py | 265 +-
mne/viz/tests/test_utils.py | 73 +-
mne/viz/topo.py | 483 +-
mne/viz/topomap.py | 1163 +++-
mne/viz/utils.py | 700 ++-
setup.cfg | 6 +-
setup.py | 36 +-
tutorials/README.txt | 4 +
.../plot_cluster_1samp_test_time_frequency.py | 18 +-
.../plot_cluster_methods_tutorial.py | 15 +-
.../plot_cluster_stats_spatio_temporal.py | 15 +-
.../plot_cluster_stats_spatio_temporal_2samp.py | 14 +-
...tats_spatio_temporal_repeated_measures_anova.py | 47 +-
.../plot_cluster_stats_time_frequency.py | 33 +-
...stats_time_frequency_repeated_measures_anova.py | 43 +-
tutorials/plot_creating_data_structures.py | 180 +
tutorials/plot_epochs_objects.py | 103 +
.../plot_epochs_to_data_frame.py | 7 +-
.../plot_ica_from_raw.py | 25 +-
tutorials/plot_info.py | 90 +
tutorials/plot_introduction.py | 373 ++
tutorials/plot_modifying_data_inplace.py | 74 +
tutorials/plot_raw_objects.py | 133 +
tutorials/plot_source_localization_basics.py | 98 +
.../plot_spatio_temporal_cluster_stats_sensor.py | 193 +
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