[med-svn] r20566 - in trunk/packages: . ffp ffp/trunk ffp/trunk/debian ffp/trunk/debian/source ffp/trunk/debian/upstream

[Andreas Tille]

Author: tille
Date: 2015-11-26 17:50:54 +0000 (Thu, 26 Nov 2015)
New Revision: 20566

Added:
   trunk/packages/ffp/
   trunk/packages/ffp/trunk/
   trunk/packages/ffp/trunk/debian/
   trunk/packages/ffp/trunk/debian/changelog
   trunk/packages/ffp/trunk/debian/compat
   trunk/packages/ffp/trunk/debian/control
   trunk/packages/ffp/trunk/debian/copyright
   trunk/packages/ffp/trunk/debian/docs
   trunk/packages/ffp/trunk/debian/links
   trunk/packages/ffp/trunk/debian/rules
   trunk/packages/ffp/trunk/debian/source/
   trunk/packages/ffp/trunk/debian/source/format
   trunk/packages/ffp/trunk/debian/upstream/
   trunk/packages/ffp/trunk/debian/upstream/metadata
   trunk/packages/ffp/trunk/debian/watch
Log:
Inject ffp


Added: trunk/packages/ffp/trunk/debian/changelog
===================================================================
--- trunk/packages/ffp/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/ffp/trunk/debian/changelog	2015-11-26 17:50:54 UTC (rev 20566)
@@ -0,0 +1,5 @@
+ffp (3.19-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Thu, 26 Nov 2015 17:09:45 +0100

Added: trunk/packages/ffp/trunk/debian/compat
===================================================================
--- trunk/packages/ffp/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/ffp/trunk/debian/compat	2015-11-26 17:50:54 UTC (rev 20566)
@@ -0,0 +1 @@
+9

Added: trunk/packages/ffp/trunk/debian/control
===================================================================
--- trunk/packages/ffp/trunk/debian/control	                        (rev 0)
+++ trunk/packages/ffp/trunk/debian/control	2015-11-26 17:50:54 UTC (rev 20566)
@@ -0,0 +1,25 @@
+Source: ffp
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: non-free/science
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               dh-autoreconf,
+               perl-tk,
+               ghostscript,
+               groff
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ffp/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/ffp/trunk/
+Homepage: http://sourceforge.net/projects/ffp-phylogeny/
+
+Package: ffp
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         perl-tk
+Description: Feature Frequency Profile Phylogeny
+ FFP (Feature frequency profile) is an alignment free comparison tool for
+ phylogenetic analysis and text comparison. It can be applied to
+ nucleotide sequences, complete genomes, proteomes and even used for text
+ comparison.

Added: trunk/packages/ffp/trunk/debian/copyright
===================================================================
--- trunk/packages/ffp/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/ffp/trunk/debian/copyright	2015-11-26 17:50:54 UTC (rev 20566)
@@ -0,0 +1,20 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: FFP
+Upstream-Contact: Gregory E. Sims <gsims1997 at yahoo.com>
+Source: http://sourceforge.net/projects/ffp-phylogeny/files/
+
+Files: *
+Copyright: 2009-2012 gsims1997 at yahoo.com
+License: non-free
+ Copies of this software may be made without modification provided those
+ copies are in agreement with the license included in this distribution.
+ The terms of the license describing this software distribution expressly
+ prohibits commercial usage. For details see the file LICENSE included
+ in this directory of the distribution.  For commercial licensing terms,
+ please contact the authors.
+
+Files: debian/*
+Copyright: 2015 Andreas Tille <tille at debian.org>
+License: GPL-3+
+ On Debian systems you can find the full text of GPL at
+ /usr/share/common-licenses/GPL.

Added: trunk/packages/ffp/trunk/debian/docs
===================================================================
--- trunk/packages/ffp/trunk/debian/docs	                        (rev 0)
+++ trunk/packages/ffp/trunk/debian/docs	2015-11-26 17:50:54 UTC (rev 20566)
@@ -0,0 +1,2 @@
+README
+NEWS

Added: trunk/packages/ffp/trunk/debian/links
===================================================================
--- trunk/packages/ffp/trunk/debian/links	                        (rev 0)
+++ trunk/packages/ffp/trunk/debian/links	2015-11-26 17:50:54 UTC (rev 20566)
@@ -0,0 +1 @@
+/usr/share/examples/ffp	/usr/share/doc/ffp/examples

Added: trunk/packages/ffp/trunk/debian/rules
===================================================================
--- trunk/packages/ffp/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/ffp/trunk/debian/rules	2015-11-26 17:50:54 UTC (rev 20566)
@@ -0,0 +1,11 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+
+%:
+	dh $@ --with autoreconf
+
+override_dh_compress:
+	dh_compress --exclude=README


Property changes on: trunk/packages/ffp/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/ffp/trunk/debian/source/format
===================================================================
--- trunk/packages/ffp/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/ffp/trunk/debian/source/format	2015-11-26 17:50:54 UTC (rev 20566)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/ffp/trunk/debian/upstream/metadata
===================================================================
--- trunk/packages/ffp/trunk/debian/upstream/metadata	                        (rev 0)
+++ trunk/packages/ffp/trunk/debian/upstream/metadata	2015-11-26 17:50:54 UTC (rev 20566)
@@ -0,0 +1,12 @@
+Reference:
+  Author: Gregory E. Sims and Sung-Hou Kim
+  Title: "Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs)"
+  Journal: Proc Natl Acad Sci U S A.
+  Year: 2011
+  Volume: 108
+  Number: 20
+  Pages: 8329-34
+  DOI: 10.1073/pnas.1105168108
+  PMID: 21536867
+  URL: http://www.pnas.org/content/108/20/8329
+  eprint: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3100984/pdf/pnas.201105168.pdf

Added: trunk/packages/ffp/trunk/debian/watch
===================================================================
--- trunk/packages/ffp/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/ffp/trunk/debian/watch	2015-11-26 17:50:54 UTC (rev 20566)
@@ -0,0 +1,3 @@
+version=3
+
+http://sf.net/ffp-phylogeny/ffp-(\d[\d\.]+)\.(?:tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))