[med-svn] [python-mne] annotated tag v0.1 created (now d960e90)
Yaroslav Halchenko
debian at onerussian.com
Fri Nov 27 17:21:54 UTC 2015
This is an automated email from the git hooks/post-receive script.
yoh pushed a change to annotated tag v0.1
in repository python-mne.
at d960e90 (tag)
tagging 25bcb032410b6cd79f321f398b8f67ab8e512b15 (commit)
tagged by Alexandre Gramfort
on Tue Nov 8 11:34:54 2011 -0500
- Log -----------------------------------------------------------------
v0.1
Alexandre Gramfort (320):
intial commit
first running version of read_evoked
first working version of read_evoked
first working version of read_cov
first working version of setup_read_raw
FIX : read raw
working read_events
cleaning exaples
bug fix in raw;py
adding packaging info
first working example for reading forward solutions
misc
adding first draft of doc
reading stc files
starting readind code with cov (not working yet!)
first working version of writing covariance matrix + first test
forgot test file
now writing evoked data
example IO evoked
Reading BEM surfaces
writing events
more tests + writing stc files
starting to write functions doc + increasing coverage
speed improvement for sparse mult
more on doc
more more on doc + pep8
adding makefile for easier clean + test cycle
writing raw files
fix in raw + test raw write
ENH : adding code to read epochs + debug in raw
ENH : now computing MNE solution
splitting fif and MNE
fix
better slicing for raw data
adding auto examples to doc
examples with new sample data + some docstrings
fix in doc + bsd license
better example of reading evoked data
more love to web page
fix lambda2 in inverse computation
better documentation
bug fix + doc on command line + baseline correction ...
Merge branch 'master' of parsley:~/work/git/pyfiff
BSD 3-clause licensing
ENH: make MNE-dSPM computation work
fix tests + examples
adding test for mne inverse computation
fix bug to allow loading of any evoked data set
adding Covariance object
better Covariance class
adding way to estimate noise cov matrix in python
a bit of reorganization + pep8
adding preprocessing.py (WIP)
ENH : pick by channel type
fix test + import
updating logo + favicon
update git infos
update examples for doc
Added missing constants
API : do not read bad channels from forward operator
adding example of forward field whitening
adding sample test raw fif dataset
adding routines to compute simple time frequency analysis with morlet wavelet
better tfr plot
ENH : new permutation t-test
better docstring
ENH : adding exact permutation test with all permutations
partial previous commit
partial previous commit (again)
DOC : adding reference for perm stats
Merge branch 'tfr'
cosmit in permutations
first attempt to be able to plot topographies
ENH : new stats on sensors + topography plots
DOC : pretifying doc
ENH : better handling of sample dataset
FIX : in handling of sample dataset
ENH : new cluster level non-parametric statistic on 1D data
fix makefile
fix doc
ENH : handling EEG layout files
DOC : adding first version of converted mne manual WIP
Merge branch 'master' of github.com:mne-tools/mne-python
first attempt to extract signal in ROIs with label files
FIX : in TFR phase lock
FIX : fix in time interval
updating axis scaling in tfr example
updating copyright sign
FIX : in cov whitening
ENH : making reading source activations in one label file work
Merge branch 'label'
adding test for label handling
adding test for time frequency transform
more on time-frequency (test + fix)
ENH : allowing parallel computing in time frequency with joblib
ENH : refactoring time frequency for speed up in parallel settings
cosmit
ENH : exposing epochs as an iterable object with lazy loading from disk
ENH : adding averge() method in Epochs
adding Epochs.average() to test
starting manual editing of the manual
more on doc
more on doc
improve speed of cluster permutation WIP
towards 2D permutation cluster stats WIP
Merge branch 'tfr4' into cluster
new example of TF cluster
create separate module for time freq analysis
ENH : Raw objects with IO capabilities
new class Evoked to store an evoked dataset
bug fix due to new Evoked class + pyflakes
ENH : Epochs.average returns an Evoked object
API : mne.compute_inverse now takes as input an Evoked dataset + an inverse_operator
FIX : due to latest API change
ENH : reading events from a raw file
increasing coverage + bug fix in read_source_spaces when add_geom = True
fix in plot_sensor_permutation_test.py
pep8
cosmit renaming
adding test for plot_topo
fix patch_info, commenting untested code, increase coverage
increase coverage in cov.py + bug fix in read_forward_solution when surf_ori=True
pep8
ENH : adding 1 sample cluster level stat
cosmit
bug fix in permutation_cluster_t_test with tail = -1
more bug fix in permutation_cluster_t_test
fix one more bug and make function _pval_from_histogram more readable
cosmit
computing single_trial_power in parallel
tiny iteration on manual
better induced power stat demo + addine baseline option in single_trial_power
new plot_evoked function + nicer examples
pep8
using plot_evoked in plot_whitened_evoked_data.py
pep8
adding __repr__ in Evoked, Raw and Epochs
fix preload in Epochs
DOC : adding appendices to manual
FIX : bug fix in reading of SSP vectors
mne WIP
ENH : reject epochs based on threshold + parsing of .ave + .cov files
adding epoch rejection everywhere
Merge branch 'inverse'
minor bug fix
combining orients in source space
minor bug fix in minimum_norm(...)
handling loose case in minimum_norm
fix epoch rejection
bug fix in pick_types
ENH: refactoring covariance estimation. TODO: reject when cov estimation
API : changing epoch rejection API
FIX : keeping only data channels when averaging
Merge branch 'manual' of github.com:mne-tools/mne-python
ENH : finish artefact rejection in cov estimation
ENH : can drop channels from Epochs
Merge branch 'master' of https://github.com/emilyruzich/mne-python
Merge branch 'master' of https://github.com/emilyruzich/mne-python
FIX : in makefile for doc
API: refactoring inverse pb to pass whitener to solver and not covariance
ENH : refactoring IO of evoked, API : new crop method for evoked
API : change access to raw data to hide the first_samp mess
adding show kw to plot_evoked
MISC : s/from_/from/g + some pep8
Merge branch 'master' of https://github.com/emilyruzich/mne-python
pep8
misc in tf cluster example
pep8
pyflakes
ENH : faster complete_source_space_info
ENH : rm some XXX for speed
FIX : rejecting cropped epochs
ENH : making permutation_cluster_1samp_test more generic with stat_fun
Merge branch 'master' of github.com:mne-tools/mne-python
Merge branch 'master' of github.com:mne-tools/mne-python
ENH : source_induced_power and SourceEstimate class + viz source WIP
ENH : source_induced_power and SourceEstimate + 3D source viewer
ENH : adding the possibility to morph source estimates
refactoring stc.py to source_space.py
pep8
numpy trick
renaming bem_surfaces.py to surface.py + merge surfer.py and surface.py
ENH : speed improvement e.g. in source_induced_power
ENH : allowing source_induced_power to run in parallel
new setup instructions for martinos
misc
adding ch_names property in Raw
ENH : adding option to subtract_evoked in source_induced_power
bug fix
ENH : better handling of SSP projection in Epochs and Evoked
making permutation_t_test parallel
fix docstring of permutation_t_test
ENH : adding the possibility to compute MNE on raw data + restriction to 1 label
DOC : clean before build
ENH : speeding up source_induced_power using true data dimension
fix write_events
DOC : some cleanup in index page
DOC : fix many warnings in doc generation + more conversion
running reindent on all files
inplace square computation
DOC : adding gitwash to the doc
basic band pass filter based on firwin2
ENH : basic EOG + ECG artifacts detectors
reindent
TEST : better test in artifacts
DOC : docstring in find_eog_events
ENH : adding time_func in apply_inverse_raw
adding low and high pass filters
avoiding underflows in norm computation
ENH : setup.py + packaging
Merge branch 'master' of https://github.com/emilyruzich/mne-python
Merge branch 'master' of https://github.com/emilyruzich/mne-python
ENH : can crop SourceEstimate
changing file permissions
better docstring
ENH : adding alpha version of script to remove EOG + ECG artifacts from data
ENH : adding script to generate BEM models from flash sequences (mne_flash_bem_model.py)
fix in path setup at MGH
DOC: reorganizing examples
Merge branch 'master' of https://github.com/emilyruzich/mne-python
DOC : fix some paths
cleanup manual + some examples
DOC : fixing manual (refs + links)
update README.rst
update README.rst
update README.rst
ENH : adding support for quad surf files
var naming
FIX : None bug in copy_tree
FIX : bug with pca in source_induced_power
TEST : for pca in source_induced_power
Merge branch 'master' of github.com:mne-tools/mne-python
Merge branch 'master' of https://github.com/emilyruzich/mne-python
fix manual indentation
ENH : adding cluster level stats with connectivity matrix (for mesh)
Merge branch 'master' of https://github.com/emilyruzich/mne-python
more on manual
DOC : more fix on manual (done)
FIX : bug fix in cluster_level with connectivity + FIX in pval computation
ENH : adding option for nb smoothing iter in morphing
MISC : cleaning cluster level with connectivity
ENH : factoring code for baseline correction
ENH: adding tools to generate source space connectivity
adding verbose option
factoring joblib parallel code
ENH : can pass seed in cluster level stats
misc in manual
fix
FIX: reading old evoked file
FIX : in Evoked.crop
ENH : store sfreq and nchan as float and int in Evoked
FIX: getting rid of Bunch object which was error prone with deepcopy
ENH : first support for CTF data
FIX : misuse of is to compare strings
FIX : some is istead of == and some speed improvement
misc in MNE
doc fix
fix preload inconsistency due to bad epochs
ENH : better support for CTF data + tests
ENH : adding EEG ssp in Epochs
FIX : fix cov estimation with events (not 100 pct sure yet)
API: compute_covariance now takes as input Epochs
ENH : make SSP computation work + adding tests
FIX : adding missing fif proj file for tests
TEST: test find ECG peaks
TEST: test find EOG peaks
FIX : fix reject param in cov estimation example
FIX : fix text in cov estimation example
ENH : using local imports in tests
ENH : using local imports in tests
DOC: capturing mayavi for doc generation
DOC: capturing mayavi for doc generation for real
some doc string
some doc string
DOC: better latex doc
DOC : better doc upload procedure with rsync
DOC: better latex rendering of the doc
DOC: misc title formatting
API : s/source_induced_power/source_band_induced_power
FIX: bug fix in reading of dig points
DOC : adding tutorials on Python
FIX: Isotrak does not throw an Exception when not found
FIX : one more fix on isotrak
DOC : tiny fix to getting started page
ENH : adding pick_normal option in MNE estimates
ENH : adding multi tapper PSD computation
FIX : less code duplication in write of meas info between raw and evoked (WIP)
API: do not copy the digitization points from original raw data but read it from info dict
FIX : fix writing of meas info for maxfilter
ENH: adding transform_coordinates
ENH: adding drop_small_buffer to Raw.save for maxfilter
API: removing support for fMRI prior
ENH : new apply_inverse_epochs and refactoring of minimum_norm.inverse + tests
ENH : improve Makefile
FIX : fix scikit-learn renaming compat
ENH : adding support to assemble inverse operator in Python and removing old version
Merge branch 'master' into invop
FIX : removing old test_whitening_cov
Merge pull request #2 from agramfort/invop
Merge pull request #1 from KuperbergLab/master
STY : misc
trailing spaces
ENH : using nose.tools.assert_true instead of assert
Merge branch 'master' into label_tfr
ENH : using pick_normal for PLV in source space + cleanup
ENH : fix for new sample dataset
DOC: using scipy-lectures as tuto
Merge branch 'master' into label_tfr
prettify example + adding test for source_induced_power
ENH: misc extra line
Merge pull request #3 from agramfort/label_tfr
FIX : fix svd without full_matrices=False
Merge pull request #4 from mluessi/doc_fixes
typo in example comment
Merge branch 'master' of github.com:mne-tools/mne-python
preparing 0.1 release
Merge branch 'master' of github.com:mne-tools/mne-python
updating README
update version number
fix copyrights and authors
Emily Ruzich (41):
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
Merge branch 'manual' of git://github.com/mne-tools/mne-python
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
fixing manual
Martin Luessi (4):
add info to example
typo
typo
Merge branch 'master' of github.com:mne-tools/mne-python
Matti Hamalainen (9):
Edited the front page
Improved the scales in plot_read_evoked
Fixed plot scales in plot_read_epochs
The name of the inverse operator file was fixed
Fixed subplot placing
Fixed formatting of diagnostic output
Fixed the time scale
Fixed formatting of diagnostic output
Added more information about the software
Yaroslav Halchenko (1):
BF: fixing executable flags for all docs/scripts/images
ellenlau (1):
Fix time units (s->ms)
-----------------------------------------------------------------------
This annotated tag includes the following new commits:
new d0b2b37 intial commit
new e334ccb first running version of read_evoked
new c3d0c6d first working version of read_evoked
new bcccd7c first working version of read_cov
new 621ae31 first working version of setup_read_raw
new 91dbc83 FIX : read raw
new 4f55842 working read_events
new 6529715 cleaning exaples
new 1f52ce4 bug fix in raw;py
new b91920b adding packaging info
new a480c5a first working example for reading forward solutions
new 8ce493a misc
new 588a6f6 adding first draft of doc
new 9072d39 reading stc files
new 2eea3ad starting readind code with cov (not working yet!)
new 3143ae5 first working version of writing covariance matrix + first test
new ee1585b forgot test file
new 69291b0 now writing evoked data
new 7b306cd example IO evoked
new 8435456 Reading BEM surfaces
new d514a11 writing events
new efed27f more tests + writing stc files
new fd29a5b starting to write functions doc + increasing coverage
new a173c05 speed improvement for sparse mult
new 3c98f6e more on doc
new a31f945 more more on doc + pep8
new 27f9ed0 adding makefile for easier clean + test cycle
new e785e6e writing raw files
new 5e8cb91 fix in raw + test raw write
new 05264df ENH : adding code to read epochs + debug in raw
new b475cbc ENH : now computing MNE solution
new 2da3802 splitting fif and MNE
new e80efbb fix
new 4da7024 better slicing for raw data
new 7738cc5 adding auto examples to doc
new 9c3e90b examples with new sample data + some docstrings
new ece7557 fix in doc + bsd license
new ce9c428 better example of reading evoked data
new e85622e more love to web page
new b2fff6f fix lambda2 in inverse computation
new 2b73715 better documentation
new 037e301 Edited the front page
new 6b4485a bug fix + doc on command line + baseline correction ...
new 66283d3 Merge branch 'master' of parsley:~/work/git/pyfiff
new 4fa2c3b BSD 3-clause licensing
new 7786a0f ENH: make MNE-dSPM computation work
new 81f317d fix tests + examples
new e9dc6af adding test for mne inverse computation
new f627fa2 fix bug to allow loading of any evoked data set
new 626003a adding Covariance object
new 5f24f9c better Covariance class
new f35a9ba adding way to estimate noise cov matrix in python
new f898d94 a bit of reorganization + pep8
new 839aa49 adding preprocessing.py (WIP)
new 4f67f88 ENH : pick by channel type ENH : data whitening with noise covariance matrix ENH : moving transform functions in transforms.py
new bccd977 fix test + import
new 60d472c updating logo + favicon
new 565bc76 update git infos
new f2fdbf9 update examples for doc
new ea771ff Added missing constants
new 4a38978 API : do not read bad channels from forward operator ENH : adding possibility to whiten forward solutions using noise covariance matrix.
new aa2ca95 adding example of forward field whitening
new 588aba1 adding sample test raw fif dataset updating corresponding tests
new 55b831b adding routines to compute simple time frequency analysis with morlet wavelet
new 82eb385 better tfr plot
new 54f9e47 ENH : new permutation t-test
new 0bd92c4 better docstring
new 71702c1 ENH : adding exact permutation test with all permutations + some tests and cosmits
new 611a97c partial previous commit
new ddb167c partial previous commit (again)
new dc7864b DOC : adding reference for perm stats
new 982d5dc Merge branch 'tfr'
new e2fa002 cosmit in permutations
new 4fb4c74 first attempt to be able to plot topographies
new 9a665e1 ENH : new stats on sensors + topography plots
new 4fd812d DOC : pretifying doc
new 81a34e9 ENH : better handling of sample dataset
new a5e5cef FIX : in handling of sample dataset
new 70fb56b ENH : new cluster level non-parametric statistic on 1D data
new 6d10f66 fix makefile
new 4d8055f fix doc
new 070e3fd Improved the scales in plot_read_evoked
new 2c0c2af Fixed plot scales in plot_read_epochs
new f49fefe The name of the inverse operator file was fixed
new 6913499 Fixed subplot placing
new 522cd32 Fixed formatting of diagnostic output
new 974205f Fixed the time scale
new 7b0b8a3 Fixed formatting of diagnostic output
new f9defd6 ENH : handling EEG layout files
new 5e744ee DOC : adding first version of converted mne manual WIP
new e2470f0 Merge branch 'master' of github.com:mne-tools/mne-python
new 208cd1b first attempt to extract signal in ROIs with label files
new 08c470e FIX : in TFR phase lock
new 004f196 FIX : fix in time interval
new 18444e2 updating axis scaling in tfr example
new aad71df updating copyright sign
new d9449a6 FIX : in cov whitening
new 528634d ENH : making reading source activations in one label file work
new 57bbf39 Merge branch 'label'
new e485bdc adding test for label handling
new 77b8287 adding test for time frequency transform
new fabc50b more on time-frequency (test + fix)
new 1804c0e ENH : allowing parallel computing in time frequency with joblib
new 47e17da ENH : refactoring time frequency for speed up in parallel settings
new 768dc2a cosmit
new 948cfad ENH : exposing epochs as an iterable object with lazy loading from disk
new dced7de ENH : adding averge() method in Epochs
new fa1c2be adding Epochs.average() to test
new ab71920 starting manual editing of the manual
new c6570a2 more on doc
new 9628987 more on doc
new e123ba4 improve speed of cluster permutation WIP
new b9017b3 towards 2D permutation cluster stats WIP
new 3721652 Merge branch 'tfr4' into cluster
new 740f72b new example of TF cluster
new d281c2b create separate module for time freq analysis
new 0508abe ENH : Raw objects with IO capabilities
new affa3df new class Evoked to store an evoked dataset
new 5c7c993 bug fix due to new Evoked class + pyflakes
new 20e60b8 ENH : Epochs.average returns an Evoked object
new e26d6d2 API : mne.compute_inverse now takes as input an Evoked dataset + an inverse_operator
new 6dedaf9 FIX : due to latest API change
new 40becea ENH : reading events from a raw file
new 12b029a increasing coverage + bug fix in read_source_spaces when add_geom = True
new 41e2cd3 fix in plot_sensor_permutation_test.py
new 5bbbf0a pep8
new 26c2daf cosmit renaming
new dd5eca6 adding test for plot_topo
new 8147024 fix patch_info, commenting untested code, increase coverage
new 9f00678 increase coverage in cov.py + bug fix in read_forward_solution when surf_ori=True
new 55d8f06 pep8
new 33aa24c ENH : adding 1 sample cluster level stat
new 4b05bd9 cosmit
new 73713a8 bug fix in permutation_cluster_t_test with tail = -1
new 98d54e9 more bug fix in permutation_cluster_t_test
new 59b801f fix one more bug and make function _pval_from_histogram more readable
new 68a9473 cosmit
new 5761863 computing single_trial_power in parallel
new 5c32db9 tiny iteration on manual
new 0f489ab better induced power stat demo + addine baseline option in single_trial_power
new ffdce87 new plot_evoked function + nicer examples
new 15752b0 pep8
new efbbc25 using plot_evoked in plot_whitened_evoked_data.py
new 203cf5d pep8
new fc8276f fixing manual
new 38ae358 fixing manual
new 038454f fixing manual
new 90d5f92 fixing manual
new 961b087 fixing manual
new 604586b fixing manual
new 3e4d074 fixing manual
new 0f6c6ca fixing manual
new d496d3b adding __repr__ in Evoked, Raw and Epochs
new 85126db fix preload in Epochs
new 18c931c fixing manual
new 0c1e6d9 fixing manual
new 0c1a3da fixing manual
new f9bd5a8 fixing manual
new 9db7749 fixing manual
new 551a079 DOC : adding appendices to manual
new 1454b8f FIX : bug fix in reading of SSP vectors ENH : implementing minimum norm estimate WIP (todo: loose case + tests !)
new d1c4e60 mne WIP
new ce3505f ENH : reject epochs based on threshold + parsing of .ave + .cov files
new 758c90b adding epoch rejection everywhere
new 99ab29e Merge branch 'inverse'
new 860ef78 minor bug fix
new 75dc2c2 combining orients in source space
new 04adac5 minor bug fix in minimum_norm(...)
new 907410e handling loose case in minimum_norm
new a6a1818 fix epoch rejection
new 70c0639 bug fix in pick_types
new 2db8e0a fixing manual
new 2037e21 fixing manual
new a9cf2f7 fixing manual
new 25a16a7 ENH: refactoring covariance estimation. TODO: reject when cov estimation
new 0fd67ce API : changing epoch rejection API
new 419ae64 FIX : keeping only data channels when averaging
new 1e52640 Merge branch 'manual' of github.com:mne-tools/mne-python
new d2bb290 fixing manual
new 243a144 fixing manual
new 700c4bd fixing manual
new ccd178e ENH : finish artefact rejection in cov estimation
new bdbc36a ENH : can drop channels from Epochs
new 62e89f5 fixing manual
new f9ce0df fixing manual
new a56d71d Merge branch 'master' of https://github.com/emilyruzich/mne-python
new 95f5699 fixing manual
new 850d2da fixing manual
new 3fd3d06 Merge branch 'master' of https://github.com/emilyruzich/mne-python
new 1185fff FIX : in makefile for doc
new eb67b7a API: refactoring inverse pb to pass whitener to solver and not covariance
new 19097ed ENH : refactoring IO of evoked, API : new crop method for evoked
new e193348 API : change access to raw data to hide the first_samp mess API : rename cov estimation methods FIX : write of raw data FIX : some tests
new 2459381 adding show kw to plot_evoked
new 018c573 fixing manual
new 879debc MISC : s/from_/from/g + some pep8
new 189ebab Merge branch 'master' of https://github.com/emilyruzich/mne-python
new bd1860e pep8
new 945bf97 misc in tf cluster example
new fe4fbec pep8
new f21fedb pyflakes
new 6b0d529 ENH : faster complete_source_space_info
new 49c4df6 ENH : rm some XXX for speed
new 3fd04c0 FIX : rejecting cropped epochs
new 581ad27 ENH : making permutation_cluster_1samp_test more generic with stat_fun
new 70c16aa Merge branch 'master' of github.com:mne-tools/mne-python
new 1838855 Merge branch 'master' of github.com:mne-tools/mne-python
new 35c7ba1 ENH : source_induced_power and SourceEstimate class + viz source WIP
new 7bccdfc ENH : source_induced_power and SourceEstimate + 3D source viewer
new 8502ef8 ENH : adding the possibility to morph source estimates FIX : some fix to read sparse data in fif FIX : fix failing stats test
new aef45e3 refactoring stc.py to source_space.py
new f095c6d pep8
new 10088c6 numpy trick
new 00a3aad renaming bem_surfaces.py to surface.py + merge surfer.py and surface.py
new 097c812 ENH : speed improvement e.g. in source_induced_power
new bb22095 ENH : allowing source_induced_power to run in parallel
new 30e0ee1 new setup instructions for martinos
new 278b76b misc
new 93313fd adding ch_names property in Raw
new 8bd01b8 ENH : adding option to subtract_evoked in source_induced_power
new 8cf0a1a bug fix
new 39582d5 ENH : better handling of SSP projection in Epochs and Evoked
new 0b8c43f making permutation_t_test parallel
new 9dc791a fix docstring of permutation_t_test
new 4100ab9 ENH : adding the possibility to compute MNE on raw data + restriction to 1 label
new 0ccd0bd DOC : clean before build
new a63f8b1 ENH : speeding up source_induced_power using true data dimension
new 962fd2d fix write_events
new 88fc40a DOC : some cleanup in index page
new 0ef5163 DOC : fix many warnings in doc generation + more conversion
new c3bad67 running reindent on all files
new 1c9ef2e inplace square computation
new a5fab20 DOC : adding gitwash to the doc
new f8a385e basic band pass filter based on firwin2
new 8565be6 ENH : basic EOG + ECG artifacts detectors
new d2fdbff reindent
new 83f5066 TEST : better test in artifacts
new 6a94339 DOC : docstring in find_eog_events
new e36c38c ENH : adding time_func in apply_inverse_raw
new a3d1ccb fixing manual
new 25ad2d2 Merge branch 'manual' of git://github.com/mne-tools/mne-python
new 722ad1f adding low and high pass filters
new 401cf7a fixing manual
new 73f428e avoiding underflows in norm computation
new aa4bf20 fixing manual
new b59e350 ENH : setup.py + packaging
new 31ac536 Merge branch 'master' of https://github.com/emilyruzich/mne-python
new e9c20fc fixing manual
new f4c285f fixing manual
new 3bdfe3c fixing manual
new c55c582 fixing manual
new c02493a fixing manual
new 64d641e Merge branch 'master' of https://github.com/emilyruzich/mne-python
new f66609f fixing manual
new 49b0fe0 ENH : can crop SourceEstimate
new c713757 changing file permissions
new de57d29 fixing manual
new c1d9ad3 better docstring
new c71e160 ENH : adding alpha version of script to remove EOG + ECG artifacts from data
new d173657 ENH : adding script to generate BEM models from flash sequences (mne_flash_bem_model.py)
new 480062b fix in path setup at MGH
new 46c6144 DOC: reorganizing examples
new f9f03d5 Merge branch 'master' of https://github.com/emilyruzich/mne-python
new 3bdf465 DOC : fix some paths
new 811c2db cleanup manual + some examples
new ff70699 DOC : fixing manual (refs + links)
new 593a321 update README.rst
new bd3f1e5 update README.rst
new 8d7bed5 update README.rst
new b8eefc4 ENH : adding support for quad surf files API : no need to pass source space to mne.morph_data
new 3079d56 var naming
new e455879 fixing manual
new 2d65617 fixing manual
new f28ba25 FIX : None bug in copy_tree
new 9c5d3e7 FIX : bug with pca in source_induced_power
new afeb01d TEST : for pca in source_induced_power
new 4844e51 Merge branch 'master' of github.com:mne-tools/mne-python
new 328ad44 fixing manual
new 693e686 Merge branch 'master' of https://github.com/emilyruzich/mne-python
new 2faca7a fix manual indentation
new 1b8342b fixing manual
new 6f1c7d6 ENH : adding cluster level stats with connectivity matrix (for mesh)
new acf298d Merge branch 'master' of https://github.com/emilyruzich/mne-python
new f0d3912 more on manual
new 3c8860b fixing manual
new 466d646 fixing manual
new 81fc4ed DOC : more fix on manual (done)
new da8526e FIX : bug fix in cluster_level with connectivity + FIX in pval computation
new 49b5fe9 ENH : adding option for nb smoothing iter in morphing
new 2d492f5 MISC : cleaning cluster level with connectivity
new 7d4a8c0 ENH : factoring code for baseline correction
new 33b7045 ENH: adding tools to generate source space connectivity
new bfad910 adding verbose option
new bda9bd5 factoring joblib parallel code
new 7b19fca ENH : can pass seed in cluster level stats
new c970a54 misc in manual
new 11a4ecf fix
new d32cb2b FIX: reading old evoked file
new 2377d9c FIX : in Evoked.crop
new 929a53c ENH : store sfreq and nchan as float and int in Evoked
new d7aaed6 FIX: getting rid of Bunch object which was error prone with deepcopy
new ef97d51 ENH : first support for CTF data
new 5e61e34 FIX : misuse of is to compare strings
new 96f01a6 FIX : some is istead of == and some speed improvement
new 1390376 misc in MNE
new 37b7360 doc fix
new 0bf4b4a fix preload inconsistency due to bad epochs
new 17d1dfe ENH : better support for CTF data + tests
new c36a91a ENH : adding EEG ssp in Epochs FIX : Evoked.times now match C code TEST : better test with C code between Epochs.average and Evoked NOTE : cov estimation + SSP estimation still needs to be fixed
new b498ec7 FIX : fix cov estimation with events (not 100 pct sure yet)
new 404f762 API: compute_covariance now takes as input Epochs
new 398b4c8 ENH : make SSP computation work + adding tests
new 43636df FIX : adding missing fif proj file for tests
new a76551d TEST: test find ECG peaks
new 6ddb6fa TEST: test find EOG peaks
new eb4d68e FIX : fix reject param in cov estimation example
new 2cd1df9 FIX : fix text in cov estimation example
new a3920a5 ENH : using local imports in tests
new 46e1291 ENH : using local imports in tests
new 31a64f7 DOC: capturing mayavi for doc generation
new bc6dace DOC: capturing mayavi for doc generation for real
new 868b5bd some doc string
new 3124bf4 some doc string
new 240886c DOC: better latex doc
new 8d16d66 DOC : better doc upload procedure with rsync
new d6d60a7 DOC: better latex rendering of the doc
new d9613ce DOC: misc title formatting
new eb91264 API : s/source_induced_power/source_band_induced_power ENH : new source_induced_power to computer power and phase lock in a label
new 30f576f FIX: bug fix in reading of dig points
new 747ed2c DOC : adding tutorials on Python
new 31eb147 FIX: Isotrak does not throw an Exception when not found
new 317db4d FIX : one more fix on isotrak
new 62582ee DOC : tiny fix to getting started page
new 15aefd3 ENH : adding pick_normal option in MNE estimates
new 5b3d1ae ENH : adding multi tapper PSD computation
new e7284e5 Added more information about the software
new 36133fc FIX : less code duplication in write of meas info between raw and evoked (WIP)
new ff5b2ef API: do not copy the digitization points from original raw data but read it from info dict
new 83c9b08 FIX : fix writing of meas info for maxfilter
new 9caac93 ENH: adding transform_coordinates
new 26a5f9b ENH: adding drop_small_buffer to Raw.save for maxfilter
new c7c38b7 API: removing support for fMRI prior
new 906abbb ENH : new apply_inverse_epochs and refactoring of minimum_norm.inverse + tests
new 2912534 Fix time units (s->ms)
new 5656994 ENH : improve Makefile
new 63cf54c FIX : fix scikit-learn renaming compat
new 45600a4 ENH : adding support to assemble inverse operator in Python and removing old version
new 5e7e14a Merge branch 'master' into invop
new 6550839 FIX : removing old test_whitening_cov
new bbbd7bf Merge pull request #2 from agramfort/invop
new c71e096 Merge pull request #1 from KuperbergLab/master
new 2b8c40c STY : misc
new ecb5fae trailing spaces
new 234b9d9 ENH : using nose.tools.assert_true instead of assert
new 1d4a117 Merge branch 'master' into label_tfr
new 11d22fd ENH : using pick_normal for PLV in source space + cleanup
new 3569d70 ENH : fix for new sample dataset
new e7d0874 DOC: using scipy-lectures as tuto
new 4c0e1a9 Merge branch 'master' into label_tfr
new 87c0dff prettify example + adding test for source_induced_power
new abac1f6 ENH: misc extra line
new b8e6f91 Merge pull request #3 from agramfort/label_tfr
new eff54af FIX : fix svd without full_matrices=False
new f1ca553 add info to example
new a1862f1 Merge pull request #4 from mluessi/doc_fixes
new 8e30d92 typo
new 4c3f8b8 typo in example comment
new 9215d22 Merge branch 'master' of github.com:mne-tools/mne-python
new c577258 typo
new f45a9b5 Merge branch 'master' of github.com:mne-tools/mne-python
new 2e624ce preparing 0.1 release
new 756067e Merge branch 'master' of github.com:mne-tools/mne-python
new 768d149 updating README
new 7d9adec update version number
new f51d921 BF: fixing executable flags for all docs/scripts/images
new 25bcb03 fix copyrights and authors
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