[med-svn] [python-mne] 181/353: define option types
Yaroslav Halchenko
debian at onerussian.com
Fri Nov 27 17:24:54 UTC 2015
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yoh pushed a commit to tag 0.4
in repository python-mne.
commit da11aacf2ceb40255b95d1df9def124f946e7525
Author: Martin Luessi <mluessi at nmr.mgh.harvard.edu>
Date: Tue May 15 15:05:42 2012 -0400
define option types
---
bin/mne_compute_proj_ecg.py | 26 +++++++++++++-------------
bin/mne_compute_proj_eog.py | 26 +++++++++++++-------------
bin/mne_maxfilter.py | 2 +-
3 files changed, 27 insertions(+), 27 deletions(-)
diff --git a/bin/mne_compute_proj_ecg.py b/bin/mne_compute_proj_ecg.py
index 2325852..8468379 100755
--- a/bin/mne_compute_proj_ecg.py
+++ b/bin/mne_compute_proj_ecg.py
@@ -21,25 +21,25 @@ if __name__ == '__main__':
parser = OptionParser()
parser.add_option("-i", "--in", dest="raw_in",
help="Input raw FIF file", metavar="FILE")
- parser.add_option("--tmin", dest="tmin",
+ parser.add_option("--tmin", dest="tmin", type="float",
help="Time before event in seconds",
default=-0.2)
- parser.add_option("--tmax", dest="tmax",
+ parser.add_option("--tmax", dest="tmax", type="float",
help="Time after event in seconds",
default=0.4)
- parser.add_option("-g", "--n-grad", dest="n_grad",
+ parser.add_option("-g", "--n-grad", dest="n_grad", type="int",
help="Number of SSP vectors for gradiometers",
default=2)
- parser.add_option("-m", "--n-mag", dest="n_mag",
+ parser.add_option("-m", "--n-mag", dest="n_mag", type="int",
help="Number of SSP vectors for magnetometers",
default=2)
- parser.add_option("-e", "--n-eeg", dest="n_eeg",
+ parser.add_option("-e", "--n-eeg", dest="n_eeg", type="int",
help="Number of SSP vectors for EEG",
default=2)
- parser.add_option("--l-freq", dest="l_freq",
+ parser.add_option("--l-freq", dest="l_freq", type="float",
help="Filter low cut-off frequency in Hz",
default=1)
- parser.add_option("--h-freq", dest="h_freq",
+ parser.add_option("--h-freq", dest="h_freq", type="float",
help="Filter high cut-off frequency in Hz",
default=100)
parser.add_option("-p", "--preload", dest="preload",
@@ -51,25 +51,25 @@ if __name__ == '__main__':
parser.add_option("--proj", dest="proj",
help="Use SSP projections from a fif file.",
default=None)
- parser.add_option("--filtersize", dest="filter_length",
+ parser.add_option("--filtersize", dest="filter_length", type="int",
help="Number of taps to use for filtering",
default=2048)
- parser.add_option("-j", "--n-jobs", dest="n_jobs",
+ parser.add_option("-j", "--n-jobs", dest="n_jobs", type="int",
help="Number of jobs to run in parallel",
default=1)
parser.add_option("-c", "--channel", dest="ch_name",
help="Channel to use for ECG detection (Required if no ECG found)",
default=None)
- parser.add_option("--rej-grad", dest="rej_grad",
+ parser.add_option("--rej-grad", dest="rej_grad", type="float",
help="Gradiometers rejection parameter in fT/cm (peak to peak amplitude)",
default=2000)
- parser.add_option("--rej-mag", dest="rej_mag",
+ parser.add_option("--rej-mag", dest="rej_mag", type="float",
help="Magnetometers rejection parameter in fT (peak to peak amplitude)",
default=3000)
- parser.add_option("--rej-eeg", dest="rej_eeg",
+ parser.add_option("--rej-eeg", dest="rej_eeg", type="float",
help="EEG rejection parameter in uV (peak to peak amplitude)",
default=50)
- parser.add_option("--rej-eog", dest="rej_eog",
+ parser.add_option("--rej-eog", dest="rej_eog", type="float",
help="EOG rejection parameter in uV (peak to peak amplitude)",
default=250)
parser.add_option("--avg-ref", dest="avg_ref", action="store_true",
diff --git a/bin/mne_compute_proj_eog.py b/bin/mne_compute_proj_eog.py
index 6e74d35..1320fb3 100755
--- a/bin/mne_compute_proj_eog.py
+++ b/bin/mne_compute_proj_eog.py
@@ -27,25 +27,25 @@ if __name__ == '__main__':
parser = OptionParser()
parser.add_option("-i", "--in", dest="raw_in",
help="Input raw FIF file", metavar="FILE")
- parser.add_option("--tmin", dest="tmin",
+ parser.add_option("--tmin", dest="tmin", type="float",
help="Time before event in seconds",
default=-0.2)
- parser.add_option("--tmax", dest="tmax",
+ parser.add_option("--tmax", dest="tmax", type="float",
help="Time after event in seconds",
default=0.2)
- parser.add_option("-g", "--n-grad", dest="n_grad",
+ parser.add_option("-g", "--n-grad", dest="n_grad", type="int",
help="Number of SSP vectors for gradiometers",
default=2)
- parser.add_option("-m", "--n-mag", dest="n_mag",
+ parser.add_option("-m", "--n-mag", dest="n_mag", type="int",
help="Number of SSP vectors for magnetometers",
default=2)
- parser.add_option("-e", "--n-eeg", dest="n_eeg",
+ parser.add_option("-e", "--n-eeg", dest="n_eeg", type="int",
help="Number of SSP vectors for EEG",
default=2)
- parser.add_option("--l-freq", dest="l_freq",
+ parser.add_option("--l-freq", dest="l_freq", type="float",
help="Filter low cut-off frequency in Hz",
default=1)
- parser.add_option("--h-freq", dest="h_freq",
+ parser.add_option("--h-freq", dest="h_freq", type="float",
help="Filter high cut-off frequency in Hz",
default=35)
parser.add_option("-p", "--preload", dest="preload",
@@ -57,22 +57,22 @@ if __name__ == '__main__':
parser.add_option("--proj", dest="proj",
help="Use SSP projections from a fif file.",
default=None)
- parser.add_option("--filtersize", dest="filter_length",
+ parser.add_option("--filtersize", dest="filter_length", type="int",
help="Number of taps to use for filtering",
default=2048)
- parser.add_option("-j", "--n-jobs", dest="n_jobs",
+ parser.add_option("-j", "--n-jobs", dest="n_jobs", type="int",
help="Number of jobs to run in parallel",
default=1)
- parser.add_option("--rej-grad", dest="rej_grad",
+ parser.add_option("--rej-grad", dest="rej_grad", type="float",
help="Gradiometers rejection parameter in fT/cm (peak to peak amplitude)",
default=2000)
- parser.add_option("--rej-mag", dest="rej_mag",
+ parser.add_option("--rej-mag", dest="rej_mag", type="float",
help="Magnetometers rejection parameter in fT (peak to peak amplitude)",
default=3000)
- parser.add_option("--rej-eeg", dest="rej_eeg",
+ parser.add_option("--rej-eeg", dest="rej_eeg", type="float",
help="EEG rejection parameter in uV (peak to peak amplitude)",
default=50)
- parser.add_option("--rej-eog", dest="rej_eog",
+ parser.add_option("--rej-eog", dest="rej_eog", type="float",
help="EOG rejection parameter in uV (peak to peak amplitude)",
default=1e9)
parser.add_option("--avg-ref", dest="avg_ref", action="store_true",
diff --git a/bin/mne_maxfilter.py b/bin/mne_maxfilter.py
index 606dd70..ad89a07 100755
--- a/bin/mne_maxfilter.py
+++ b/bin/mne_maxfilter.py
@@ -60,7 +60,7 @@ if __name__ == '__main__':
parser.add_option("--trans", dest="mv_trans",
help="Transforms the data into the coil definitions of in_fname, or into the default frame",
default=None)
- parser.add_option("--movecomp", dest="mv_comp",
+ parser.add_option("--movecomp", dest="mv_comp", action="store_true",
help="Estimates and compensates head movements in continuous raw data",
default=False)
parser.add_option("--headpos", dest="mv_headpos", action="store_true",
--
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