[med-svn] [python-mne] 266/353: added check if preloaded is true
Yaroslav Halchenko
debian at onerussian.com
Fri Nov 27 17:25:13 UTC 2015
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yoh pushed a commit to tag 0.4
in repository python-mne.
commit d3cfc4fa7e3b8493d5339974e79ccf15ff064730
Author: Daniel Strohmeier <daniel.strohmeier at googlemail.com>
Date: Fri Jul 13 09:06:03 2012 +0200
added check if preloaded is true
---
mne/artifacts/stim.py | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/mne/artifacts/stim.py b/mne/artifacts/stim.py
index 9a5d876..218611b 100644
--- a/mne/artifacts/stim.py
+++ b/mne/artifacts/stim.py
@@ -3,7 +3,6 @@ from scipy import signal, interpolate
from ..fiff import pick_types
-
def eliminate_stim_artifact(raw, events, event_id, tmin=-0.005,
tmax=0.01, mode='linear'):
"""Eliminates stimulations artifacts from raw data
@@ -32,6 +31,10 @@ def eliminate_stim_artifact(raw, events, event_id, tmin=-0.005,
raw: Raw object
raw data object
"""
+ if not raw._preloaded:
+ raise RuntimeError('Modifying data of Raw is only supported '
+ 'when preloading is used. Use preload=True '
+ '(or string) in the constructor.')
events_sel = (events[:, 2] == event_id)
event_start = events[events_sel, 0]
s_start = np.ceil(raw.info['sfreq'] * np.abs(tmin))[0]
@@ -46,13 +49,13 @@ def eliminate_stim_artifact(raw, events, event_id, tmin=-0.005,
for k in range(len(event_start)):
first_samp = event_start[k] - raw.first_samp - s_start
last_samp = event_start[k] - raw.first_samp + s_end
- data = raw[picks, first_samp:last_samp]
+ data, _ = raw[picks, first_samp:last_samp]
if mode == 'linear':
x = np.array([first_samp, last_samp])
- f = interpolate.interp1d(x, data[0][:, [0, -1]])
+ f = interpolate.interp1d(x, data[:, [0, -1]])
xnew = np.arange(first_samp, last_samp)
interp_data = f(xnew)
raw[picks, first_samp:last_samp] = interp_data
elif mode == 'window':
- raw[picks, first_samp:last_samp] = data[0] * window[np.newaxis, :]
+ raw[picks, first_samp:last_samp] = data * window[np.newaxis, :]
return raw
--
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