[med-svn] [python-mne] tag 0.8.3 created (now fc64a1f)
Yaroslav Halchenko
debian at onerussian.com
Fri Nov 27 17:30:41 UTC 2015
This is an automated email from the git hooks/post-receive script.
yoh pushed a change to tag 0.8.3
in repository python-mne.
at fc64a1f (commit)
This tag includes the following new commits:
new d0b2b37 intial commit
new e334ccb first running version of read_evoked
new c3d0c6d first working version of read_evoked
new bcccd7c first working version of read_cov
new 621ae31 first working version of setup_read_raw
new 91dbc83 FIX : read raw
new 4f55842 working read_events
new 6529715 cleaning exaples
new 1f52ce4 bug fix in raw;py
new b91920b adding packaging info
new a480c5a first working example for reading forward solutions
new 8ce493a misc
new 588a6f6 adding first draft of doc
new 9072d39 reading stc files
new 2eea3ad starting readind code with cov (not working yet!)
new 3143ae5 first working version of writing covariance matrix + first test
new ee1585b forgot test file
new 69291b0 now writing evoked data
new 7b306cd example IO evoked
new 8435456 Reading BEM surfaces
new d514a11 writing events
new efed27f more tests + writing stc files
new fd29a5b starting to write functions doc + increasing coverage
new a173c05 speed improvement for sparse mult
new 3c98f6e more on doc
new a31f945 more more on doc + pep8
new 27f9ed0 adding makefile for easier clean + test cycle
new e785e6e writing raw files
new 5e8cb91 fix in raw + test raw write
new 05264df ENH : adding code to read epochs + debug in raw
new b475cbc ENH : now computing MNE solution
new 2da3802 splitting fif and MNE
new e80efbb fix
new 4da7024 better slicing for raw data
new 7738cc5 adding auto examples to doc
new 9c3e90b examples with new sample data + some docstrings
new ece7557 fix in doc + bsd license
new ce9c428 better example of reading evoked data
new e85622e more love to web page
new b2fff6f fix lambda2 in inverse computation
new 2b73715 better documentation
new 037e301 Edited the front page
new 6b4485a bug fix + doc on command line + baseline correction ...
new 66283d3 Merge branch 'master' of parsley:~/work/git/pyfiff
new 4fa2c3b BSD 3-clause licensing
new 7786a0f ENH: make MNE-dSPM computation work
new 81f317d fix tests + examples
new e9dc6af adding test for mne inverse computation
new f627fa2 fix bug to allow loading of any evoked data set
new 626003a adding Covariance object
new 5f24f9c better Covariance class
new f35a9ba adding way to estimate noise cov matrix in python
new f898d94 a bit of reorganization + pep8
new 839aa49 adding preprocessing.py (WIP)
new 4f67f88 ENH : pick by channel type ENH : data whitening with noise covariance matrix ENH : moving transform functions in transforms.py
new bccd977 fix test + import
new 60d472c updating logo + favicon
new 565bc76 update git infos
new f2fdbf9 update examples for doc
new ea771ff Added missing constants
new 4a38978 API : do not read bad channels from forward operator ENH : adding possibility to whiten forward solutions using noise covariance matrix.
new aa2ca95 adding example of forward field whitening
new 588aba1 adding sample test raw fif dataset updating corresponding tests
new 55b831b adding routines to compute simple time frequency analysis with morlet wavelet
new 82eb385 better tfr plot
new 54f9e47 ENH : new permutation t-test
new 0bd92c4 better docstring
new 71702c1 ENH : adding exact permutation test with all permutations + some tests and cosmits
new 611a97c partial previous commit
new ddb167c partial previous commit (again)
new dc7864b DOC : adding reference for perm stats
new 982d5dc Merge branch 'tfr'
new e2fa002 cosmit in permutations
new 4fb4c74 first attempt to be able to plot topographies
new 9a665e1 ENH : new stats on sensors + topography plots
new 4fd812d DOC : pretifying doc
new 81a34e9 ENH : better handling of sample dataset
new a5e5cef FIX : in handling of sample dataset
new 70fb56b ENH : new cluster level non-parametric statistic on 1D data
new 6d10f66 fix makefile
new 4d8055f fix doc
new 070e3fd Improved the scales in plot_read_evoked
new 2c0c2af Fixed plot scales in plot_read_epochs
new f49fefe The name of the inverse operator file was fixed
new 6913499 Fixed subplot placing
new 522cd32 Fixed formatting of diagnostic output
new 974205f Fixed the time scale
new 7b0b8a3 Fixed formatting of diagnostic output
new f9defd6 ENH : handling EEG layout files
new 5e744ee DOC : adding first version of converted mne manual WIP
new e2470f0 Merge branch 'master' of github.com:mne-tools/mne-python
new 208cd1b first attempt to extract signal in ROIs with label files
new 08c470e FIX : in TFR phase lock
new 004f196 FIX : fix in time interval
new 18444e2 updating axis scaling in tfr example
new aad71df updating copyright sign
new d9449a6 FIX : in cov whitening
new 528634d ENH : making reading source activations in one label file work
new 57bbf39 Merge branch 'label'
new e485bdc adding test for label handling
new 77b8287 adding test for time frequency transform
new fabc50b more on time-frequency (test + fix)
new 1804c0e ENH : allowing parallel computing in time frequency with joblib
new 47e17da ENH : refactoring time frequency for speed up in parallel settings
new 768dc2a cosmit
new 948cfad ENH : exposing epochs as an iterable object with lazy loading from disk
new dced7de ENH : adding averge() method in Epochs
new fa1c2be adding Epochs.average() to test
new ab71920 starting manual editing of the manual
new c6570a2 more on doc
new 9628987 more on doc
new e123ba4 improve speed of cluster permutation WIP
new b9017b3 towards 2D permutation cluster stats WIP
new 3721652 Merge branch 'tfr4' into cluster
new 740f72b new example of TF cluster
new d281c2b create separate module for time freq analysis
new 0508abe ENH : Raw objects with IO capabilities
new affa3df new class Evoked to store an evoked dataset
new 5c7c993 bug fix due to new Evoked class + pyflakes
new 20e60b8 ENH : Epochs.average returns an Evoked object
new e26d6d2 API : mne.compute_inverse now takes as input an Evoked dataset + an inverse_operator
new 6dedaf9 FIX : due to latest API change
new 40becea ENH : reading events from a raw file
new 12b029a increasing coverage + bug fix in read_source_spaces when add_geom = True
new 41e2cd3 fix in plot_sensor_permutation_test.py
new 5bbbf0a pep8
new 26c2daf cosmit renaming
new dd5eca6 adding test for plot_topo
new 8147024 fix patch_info, commenting untested code, increase coverage
new 9f00678 increase coverage in cov.py + bug fix in read_forward_solution when surf_ori=True
new 55d8f06 pep8
new 33aa24c ENH : adding 1 sample cluster level stat
new 4b05bd9 cosmit
new 73713a8 bug fix in permutation_cluster_t_test with tail = -1
new 98d54e9 more bug fix in permutation_cluster_t_test
new 59b801f fix one more bug and make function _pval_from_histogram more readable
new 68a9473 cosmit
new 5761863 computing single_trial_power in parallel
new 5c32db9 tiny iteration on manual
new 0f489ab better induced power stat demo + addine baseline option in single_trial_power
new ffdce87 new plot_evoked function + nicer examples
new 15752b0 pep8
new efbbc25 using plot_evoked in plot_whitened_evoked_data.py
new 203cf5d pep8
new fc8276f fixing manual
new 38ae358 fixing manual
new 038454f fixing manual
new 90d5f92 fixing manual
new 961b087 fixing manual
new 604586b fixing manual
new 3e4d074 fixing manual
new 0f6c6ca fixing manual
new d496d3b adding __repr__ in Evoked, Raw and Epochs
new 85126db fix preload in Epochs
new 18c931c fixing manual
new 0c1e6d9 fixing manual
new 0c1a3da fixing manual
new f9bd5a8 fixing manual
new 9db7749 fixing manual
new 551a079 DOC : adding appendices to manual
new 1454b8f FIX : bug fix in reading of SSP vectors ENH : implementing minimum norm estimate WIP (todo: loose case + tests !)
new d1c4e60 mne WIP
new ce3505f ENH : reject epochs based on threshold + parsing of .ave + .cov files
new 758c90b adding epoch rejection everywhere
new 99ab29e Merge branch 'inverse'
new 860ef78 minor bug fix
new 75dc2c2 combining orients in source space
new 04adac5 minor bug fix in minimum_norm(...)
new 907410e handling loose case in minimum_norm
new a6a1818 fix epoch rejection
new 70c0639 bug fix in pick_types
new 2db8e0a fixing manual
new 2037e21 fixing manual
new a9cf2f7 fixing manual
new 25a16a7 ENH: refactoring covariance estimation. TODO: reject when cov estimation
new 0fd67ce API : changing epoch rejection API
new 419ae64 FIX : keeping only data channels when averaging
new 1e52640 Merge branch 'manual' of github.com:mne-tools/mne-python
new d2bb290 fixing manual
new 243a144 fixing manual
new 700c4bd fixing manual
new ccd178e ENH : finish artefact rejection in cov estimation
new bdbc36a ENH : can drop channels from Epochs
new 62e89f5 fixing manual
new f9ce0df fixing manual
new a56d71d Merge branch 'master' of https://github.com/emilyruzich/mne-python
new 95f5699 fixing manual
new 850d2da fixing manual
new 3fd3d06 Merge branch 'master' of https://github.com/emilyruzich/mne-python
new 1185fff FIX : in makefile for doc
new eb67b7a API: refactoring inverse pb to pass whitener to solver and not covariance
new 19097ed ENH : refactoring IO of evoked, API : new crop method for evoked
new e193348 API : change access to raw data to hide the first_samp mess API : rename cov estimation methods FIX : write of raw data FIX : some tests
new 2459381 adding show kw to plot_evoked
new 018c573 fixing manual
new 879debc MISC : s/from_/from/g + some pep8
new 189ebab Merge branch 'master' of https://github.com/emilyruzich/mne-python
new bd1860e pep8
new 945bf97 misc in tf cluster example
new fe4fbec pep8
new f21fedb pyflakes
new 6b0d529 ENH : faster complete_source_space_info
new 49c4df6 ENH : rm some XXX for speed
new 3fd04c0 FIX : rejecting cropped epochs
new 581ad27 ENH : making permutation_cluster_1samp_test more generic with stat_fun
new 70c16aa Merge branch 'master' of github.com:mne-tools/mne-python
new 1838855 Merge branch 'master' of github.com:mne-tools/mne-python
new 35c7ba1 ENH : source_induced_power and SourceEstimate class + viz source WIP
new 7bccdfc ENH : source_induced_power and SourceEstimate + 3D source viewer
new 8502ef8 ENH : adding the possibility to morph source estimates FIX : some fix to read sparse data in fif FIX : fix failing stats test
new aef45e3 refactoring stc.py to source_space.py
new f095c6d pep8
new 10088c6 numpy trick
new 00a3aad renaming bem_surfaces.py to surface.py + merge surfer.py and surface.py
new 097c812 ENH : speed improvement e.g. in source_induced_power
new bb22095 ENH : allowing source_induced_power to run in parallel
new 30e0ee1 new setup instructions for martinos
new 278b76b misc
new 93313fd adding ch_names property in Raw
new 8bd01b8 ENH : adding option to subtract_evoked in source_induced_power
new 8cf0a1a bug fix
new 39582d5 ENH : better handling of SSP projection in Epochs and Evoked
new 0b8c43f making permutation_t_test parallel
new 9dc791a fix docstring of permutation_t_test
new 4100ab9 ENH : adding the possibility to compute MNE on raw data + restriction to 1 label
new 0ccd0bd DOC : clean before build
new a63f8b1 ENH : speeding up source_induced_power using true data dimension
new 962fd2d fix write_events
new 88fc40a DOC : some cleanup in index page
new 0ef5163 DOC : fix many warnings in doc generation + more conversion
new c3bad67 running reindent on all files
new 1c9ef2e inplace square computation
new a5fab20 DOC : adding gitwash to the doc
new f8a385e basic band pass filter based on firwin2
new 8565be6 ENH : basic EOG + ECG artifacts detectors
new d2fdbff reindent
new 83f5066 TEST : better test in artifacts
new 6a94339 DOC : docstring in find_eog_events
new e36c38c ENH : adding time_func in apply_inverse_raw
new a3d1ccb fixing manual
new 25ad2d2 Merge branch 'manual' of git://github.com/mne-tools/mne-python
new 722ad1f adding low and high pass filters
new 401cf7a fixing manual
new 73f428e avoiding underflows in norm computation
new aa4bf20 fixing manual
new b59e350 ENH : setup.py + packaging
new 31ac536 Merge branch 'master' of https://github.com/emilyruzich/mne-python
new e9c20fc fixing manual
new f4c285f fixing manual
new 3bdfe3c fixing manual
new c55c582 fixing manual
new c02493a fixing manual
new 64d641e Merge branch 'master' of https://github.com/emilyruzich/mne-python
new f66609f fixing manual
new 49b0fe0 ENH : can crop SourceEstimate
new c713757 changing file permissions
new de57d29 fixing manual
new c1d9ad3 better docstring
new c71e160 ENH : adding alpha version of script to remove EOG + ECG artifacts from data
new d173657 ENH : adding script to generate BEM models from flash sequences (mne_flash_bem_model.py)
new 480062b fix in path setup at MGH
new 46c6144 DOC: reorganizing examples
new f9f03d5 Merge branch 'master' of https://github.com/emilyruzich/mne-python
new 3bdf465 DOC : fix some paths
new 811c2db cleanup manual + some examples
new ff70699 DOC : fixing manual (refs + links)
new 593a321 update README.rst
new bd3f1e5 update README.rst
new 8d7bed5 update README.rst
new b8eefc4 ENH : adding support for quad surf files API : no need to pass source space to mne.morph_data
new 3079d56 var naming
new e455879 fixing manual
new 2d65617 fixing manual
new f28ba25 FIX : None bug in copy_tree
new 9c5d3e7 FIX : bug with pca in source_induced_power
new afeb01d TEST : for pca in source_induced_power
new 4844e51 Merge branch 'master' of github.com:mne-tools/mne-python
new 328ad44 fixing manual
new 693e686 Merge branch 'master' of https://github.com/emilyruzich/mne-python
new 2faca7a fix manual indentation
new 1b8342b fixing manual
new 6f1c7d6 ENH : adding cluster level stats with connectivity matrix (for mesh)
new acf298d Merge branch 'master' of https://github.com/emilyruzich/mne-python
new f0d3912 more on manual
new 3c8860b fixing manual
new 466d646 fixing manual
new 81fc4ed DOC : more fix on manual (done)
new da8526e FIX : bug fix in cluster_level with connectivity + FIX in pval computation
new 49b5fe9 ENH : adding option for nb smoothing iter in morphing
new 2d492f5 MISC : cleaning cluster level with connectivity
new 7d4a8c0 ENH : factoring code for baseline correction
new 33b7045 ENH: adding tools to generate source space connectivity
new bfad910 adding verbose option
new bda9bd5 factoring joblib parallel code
new 7b19fca ENH : can pass seed in cluster level stats
new c970a54 misc in manual
new 11a4ecf fix
new d32cb2b FIX: reading old evoked file
new 2377d9c FIX : in Evoked.crop
new 929a53c ENH : store sfreq and nchan as float and int in Evoked
new d7aaed6 FIX: getting rid of Bunch object which was error prone with deepcopy
new ef97d51 ENH : first support for CTF data
new 5e61e34 FIX : misuse of is to compare strings
new 96f01a6 FIX : some is istead of == and some speed improvement
new 1390376 misc in MNE
new 37b7360 doc fix
new 0bf4b4a fix preload inconsistency due to bad epochs
new 17d1dfe ENH : better support for CTF data + tests
new c36a91a ENH : adding EEG ssp in Epochs FIX : Evoked.times now match C code TEST : better test with C code between Epochs.average and Evoked NOTE : cov estimation + SSP estimation still needs to be fixed
new b498ec7 FIX : fix cov estimation with events (not 100 pct sure yet)
new 404f762 API: compute_covariance now takes as input Epochs
new 398b4c8 ENH : make SSP computation work + adding tests
new 43636df FIX : adding missing fif proj file for tests
new a76551d TEST: test find ECG peaks
new 6ddb6fa TEST: test find EOG peaks
new eb4d68e FIX : fix reject param in cov estimation example
new 2cd1df9 FIX : fix text in cov estimation example
new a3920a5 ENH : using local imports in tests
new 46e1291 ENH : using local imports in tests
new 31a64f7 DOC: capturing mayavi for doc generation
new bc6dace DOC: capturing mayavi for doc generation for real
new 868b5bd some doc string
new 3124bf4 some doc string
new 240886c DOC: better latex doc
new 8d16d66 DOC : better doc upload procedure with rsync
new d6d60a7 DOC: better latex rendering of the doc
new d9613ce DOC: misc title formatting
new eb91264 API : s/source_induced_power/source_band_induced_power ENH : new source_induced_power to computer power and phase lock in a label
new 30f576f FIX: bug fix in reading of dig points
new 747ed2c DOC : adding tutorials on Python
new 31eb147 FIX: Isotrak does not throw an Exception when not found
new 317db4d FIX : one more fix on isotrak
new 62582ee DOC : tiny fix to getting started page
new 15aefd3 ENH : adding pick_normal option in MNE estimates
new 5b3d1ae ENH : adding multi tapper PSD computation
new e7284e5 Added more information about the software
new 36133fc FIX : less code duplication in write of meas info between raw and evoked (WIP)
new ff5b2ef API: do not copy the digitization points from original raw data but read it from info dict
new 83c9b08 FIX : fix writing of meas info for maxfilter
new 9caac93 ENH: adding transform_coordinates
new 26a5f9b ENH: adding drop_small_buffer to Raw.save for maxfilter
new c7c38b7 API: removing support for fMRI prior
new 906abbb ENH : new apply_inverse_epochs and refactoring of minimum_norm.inverse + tests
new 2912534 Fix time units (s->ms)
new 5656994 ENH : improve Makefile
new 63cf54c FIX : fix scikit-learn renaming compat
new 45600a4 ENH : adding support to assemble inverse operator in Python and removing old version
new 5e7e14a Merge branch 'master' into invop
new 6550839 FIX : removing old test_whitening_cov
new bbbd7bf Merge pull request #2 from agramfort/invop
new c71e096 Merge pull request #1 from KuperbergLab/master
new 2b8c40c STY : misc
new ecb5fae trailing spaces
new 234b9d9 ENH : using nose.tools.assert_true instead of assert
new 1d4a117 Merge branch 'master' into label_tfr
new 11d22fd ENH : using pick_normal for PLV in source space + cleanup
new 3569d70 ENH : fix for new sample dataset
new e7d0874 DOC: using scipy-lectures as tuto
new 4c0e1a9 Merge branch 'master' into label_tfr
new 87c0dff prettify example + adding test for source_induced_power
new abac1f6 ENH: misc extra line
new b8e6f91 Merge pull request #3 from agramfort/label_tfr
new eff54af FIX : fix svd without full_matrices=False
new f1ca553 add info to example
new a1862f1 Merge pull request #4 from mluessi/doc_fixes
new 8e30d92 typo
new 4c3f8b8 typo in example comment
new 9215d22 Merge branch 'master' of github.com:mne-tools/mne-python
new c577258 typo
new f45a9b5 Merge branch 'master' of github.com:mne-tools/mne-python
new 2e624ce preparing 0.1 release
new 756067e Merge branch 'master' of github.com:mne-tools/mne-python
new 768d149 updating README
new d902b34 BF: fixing executable flags for all docs/scripts/images
new a98e2d9 Merge pull request #5 from neurodebian/master
new b5d6768 fix copyrights and authors
new 44a5ef5 DOC: few typos spotted while browsing the docs
new 866d33d Merge pull request #6 from neurodebian/master
new f9ced9b typo
new 8660408 added indexing and slicing operations for epoch
new 71daef7 use warnings module, cosmetic changes
new a27f900 ENH : avoid allocating memory for all epochs (even bads)
new 382c164 Merge branch 'master' of github.com:mne-tools/mne-python
new 42feb3c use __get_item__ instead of __get_slice__, support pythonic indexing, small fixes based on Alex' comments
new 6799065 Multiple fixes: - indexing and slicing now always returns Epochs object - fixed bugs that occurs when Epochs only has one event (len(self.events) is 3 for single event) - still using shallow copy to avoid copying raw
new 2e58b78 removed debug stuff
new 51a953b indentation was meesed up
new 361b2eb Merge branch 'master' into epoch_indexing
new a23fb11 lemoved len() function, use len(self.events) instead of len(self)
new 20a4119 fixed bug that could occur if only one good event
new ce83e7a remnoved unused variables
new 468735e better way of constructing 3D array. this should be the last commit (hopefully)
new b63a138 ENH : adding decimation factor to reduce computation time source time frequency
new 5700564 Merge pull request #7 from mluessi/epoch_indexing
new d432365 Merge branch 'master' of github.com:mne-tools/mne-python
new a54ebbd STY: misc
new 7c23f79 ENH : adding temporal decimation factor to induced_power
new af719ff adding test-profile target in Makefile
new f84a054 ENH : adding numeric interface to SourceEstimate class
new e438eb0 Merge pull request #8 from agramfort/stc_array
new d4b38ce FIX : bug fix with stc.times in apply_inverse_raw
new f2fb34d ENH : first start on volume based source estimates
new c4fd097 ENH : first working support for volume source spaces
new b498e21 ENH : read volume source space info from fif
new aef0cd7 ENH : adding mne.read_proj and adding __repr__ to projection vectors
new efb9400 ENH : adding support for nifti output + nice example
new ccb9c17 wip on overlap add
new 109a9c5 ENH : allowing export of volume stc to full MRI resolution
new e3a2b8a zero phase, not yet working correctly
new 5e2766f zero-phase using overlap-add working, code needs cleanup
new 45cd849 Merge pull request #9 from agramfort/volume
new b91de33 ENH : adding pick_types_evoked function
new 2d02924 FIX : fix apply inverse with dSPM=False
new 02baee5 All filters using overlap-add
new 4deab5f ENH: overlap-add filtering for long signals
new 60a8797 TEST : adding test for MNE values around 1 nAm
new aa0ef52 ENH : raise exception when channels in inv op and data do not match
new f60e6ce ENH : nicer covariance example
new 5252c42 First commit of my branch with my fixes.
new f1f9e28 ENH : adding keep_only_data_channels option to Epochs.average
new 379aae8 FIX : allow morphing on data only defined on one hemisphere
new d8d9caa ENH : improve API for ECG detection and fix broken test
new c17966a ENH : adding support for FDR and Bonferonni p-value correction
new 4389232 Merge pull request #13 from agramfort/fdr
new 683de5c ENH : add support for ND-array in FDR + Bonferroni
new 9154cb2 Merge pull request #12 from agramfort/fix
new 422ee50 ENH : adding what's new page
new c3dde30 ENH : adding what's new page
new 9db7c13 bump version number
new ab65aa3 FIX : hot fix in plot_find_ecg_artifacts.py
new 3b02ae3 bump version number to 0.2.git
new 11ca75b ENH : Sign flip computation for robust label average of signed values
new 67922cd ENH: added filter_length parameter, improved test, cleaned up code
new 44593b8 ENH : adding write_label function + function that converts an stc to a label
new c890cbd FIX : in stc_to_label
new a2b6389 MISC: remove auto_examples with make clean in doc
new 9b95b6b cosmit
new bcef766 Merge branch 'overlap_add'
new c15907c ENH : raise warning with n_fft is not a power of 2
new 559a4c2 ENH : handle FS labels starting with lh. or rh.
new e1bc357 fixed typo
new a04eb1f FIX: ignore additional outputs of find_ecg_events
new 7befeb0 ENH: support loading of .w files for SourceEstimate
new bd2f6ff ENH: better reading of w, writing of w, unit test
new efe18eb update python system requirements
new 37b2b8f Merge branch 'master' of github.com:mne-tools/mne-python
new 1171603 ENH : more informative error message in read vol iop
new 7f4ea3a Added docstring
new 745b7c7 Merge pull request #14 from mluessi/w_file_suport
new 66d0174 FIX: mistake in documentation
new 4b09231 adding @mluessi to file header
new 18fb4c4 fix test docstring + pyflakes
new e7abf60 Update changelog
new 2ff43d2 ENH: preload and setitem for raw
new 538c87f BF: save correct first_samp time in raw file
new 1fa2b7a HACK: prevent proliferation of image files in documentation build
new 201a17b ENH: setitem for raw
new d2155cc ENH: test for raw
new bcc7e42 ENH: correct first_samp when tmin is not None
new bb71018 tmin default param 0 instead of None
new 58e8c0d ENH: preload keyword in init, support memmapped-file, moved test
new 9f5576a Merge branch 'raw_preload_setitem' of github.com:mluessi/mne-python into raw_preload_setitem
new 6bed834 Correct whats_new
new 05d10d7 Fix: wrong default argument
new 89d4ab9 ENH : update sklearn import path + fix heisen test by fixing the seed
new 7fff5eb ENH : Raw no longer derive from dict by just object + simply getitem and setitem + adding test
new adab8a9 MISC : updating what's new
new 44f835f Merge branch 'raw_preload_setitem'
new 3b273f6 ENH : adding pick_events function
new 941f3ef ENH : making Epochs.bad_dropped hidden
new d1351e6 ENH : allowing event_id == None in Epochs
new 900bd2f DOC: fix for doc math issue
new d57ec0c FIX : hard coding stime channel in mne.find_events
new 1446e94 FIX : missing pick of FIFFV_MISC_CH
new 4b8d486 ENH : allowing multiple stim channels in mne.find_events
new 89fd09f Merge pull request #16 from agramfort/simple_events
new 369e43a Merge branch 'master' of github.com:mne-tools/mne-python
new 5b9793d ENH : raise Exception with inverse operator was computed with bad channels
new 5603114 ENH : add possible to pick channel using regular expression
new 2d6a2f2 ENH: conserve_memory option for apply_inverse_raw
new 868f268 Changed conserve_memory to buffer_size
new 92f36a1 ENH: better tests for apply_inverse_raw
new f352dc7 create fixed orientation inverse operator correctly
new 25b75f8 FIX : fix make_inverse using fixed orientation forward
new 8400c67 cosmit
new de324e3 ENH : first attempt to make make_inverse_operator work with fixed orientation (small diff with C code to investigate)
new a3160e3 Merge branch 'inv_raw_lessmem'
new 04bfc74 ENH : allow the merge of evoked data obtain for example on different raw files
new 7d9e1ee ENH : support for arithmetic of Evoked objects (used for contrasts)
new ef9d5f4 update what's new
new 9e8732b Merge pull request #18 from agramfort/merge_evoked
new aa342f2 ENH: include pick_normal into _assemble_kernel to avoid computation of non-normal components when pick_normal=True
new 598355e Merge pull request #19 from mluessi/pick_normal_opt
new eb50e4d DOC: adding mne-python-intro tutorial to main doc
new 9a72ede Merge pull request #20 from agramfort/tuto
new 37d6f8e ENH: adding function applY_forward() (not finished)
new 9592210 ENH: apply_forward, finished implementation, added test
new 9d9e595 use small raw file for test
new f119671 ENH : ignore loose param with fixed orient forward
new 6267e6f apply_forward returns Evoked, cleaned up code
new ffda002 rem. include, exclude from apply_forward functions, added pick_types_forward
new 57708a3 Merge pull request #21 from mluessi/apply_forward
new f3f71d8 COSMIT: polish test_forward.py
new b991e7d FIX: pass subjects_dir to read_morph_map
new 29fd866 ENH: morph_data optimization
new 8270c58 Merge pull request #22 from mluessi/morph_data_opt
new cbd49da FIX: use float64 for sing. val in inverse to prevent underflow in square
new dd0f0fd Merge pull request #23 from mluessi/inv_sing_double
new 01d2845 ENH : more permissive test for evoked algebra
new 958e5af DOC : docstring formatting
new d2ebbdf DOC : docstring formatting
new 9292090 DOC : docstring formatting
new 0c22e60 ENH : support algebra of covariance matrices + fix writing when cov is computed in python
new 46dd988 ENH : more permissive test for evoked algebra
new cc76c08 FIX : fix stupid mistake in averaging cov
new 52863c6 Merge pull request #24 from agramfort/cov_algebra
new 37d9fb4 ENH : add support to write BEM surfaces in fif file
new a180543 fix docstring
new 3380d9f Merge pull request #25 from agramfort/write_bem_surface
new 5f33313 ENH : new mne_surf2bem.py that mimics mne_surf2bem without crashing when surface is not clean
new d74ca2c Merge pull request #26 from agramfort/mne_surf2bem
new f6cd0f3 ENH: filtering and apply_function for Raw
new decb721 ENH: support complex data, analytic signal, conditional data type conversion
new 08fbe22 Save memory if n_jobs=1 and dtype stays the same
new adfe663 added envelope parameter, renamed vars, more comments
new be3a06a Merge pull request #27 from mluessi/raw_apply
new ec73fec ENH : add support to write inverse_operators (surf + volume)
new 88e70a1 ENH : add plot_cov function to display noise cov with and without SSPs
new 7d7ab1c ENH : avoid FIFF constants duplication
new e2661ea typos
new fb6491e update what's new
new a8707f6 Merge pull request #29 from agramfort/write_inv_op
new 57d54eb typo
new 603022f Merge pull request #30 from agramfort/plot_cov
new 989e855 API: read cov now form .fif with mne.read_cov and mne.fiff.read_cov is used to read from file id
new ced9b64 API : cleanup Covariance which now restricted to noise cov
new 590e90a Merge pull request #31 from agramfort/mv_read_cov
new 74bce0d removed unused keep_sample_mean paramter
new 7b9583f Merge pull request #32 from mluessi/cov_typos
new 5352e2b FIX: wrong dimension in sample_mean computation
new 0e93b02 cov was still wrong
new a61c248 compute sample mean over epochs, can only handle single event type
new 2e287f4 FIX: cov comp. for multiple event types if keep_sample_mean=False
new 593095a Merge pull request #33 from mluessi/cov_sample_mean
new a3af68d updated whats_new
new 03805ab typo
new 7d2c6a3 removing old __version__ number
new 786ef32 Merge branch 'master' of github.com:mne-tools/mne-python
new 0ce34a2 ENH : first attemps to add class/function refence to the doc
new 46faf7f FIX : cluster problem with ndimage on some version of scipy
new 4002002 DOC : improve reference + some doc fixes
new 2e50625 update dependency list
new 6e3c479 DOC : fix doc reference page
new 3fc9397 Merge pull request #34 from agramfort/doc_reference
new 905f579 fix doctest
new d3a2824 bump version number
new 8fe9b9b bump version to 0.4.git
new 93074a1 ENH : refactor proj/SSP/PCA computation and adding support for computation on evoked data
new aab969b fix permissions
new bc1bdbd ENH : add support for ECG channel name
new 30376eb Merge pull request #35 from agramfort/proj_refactor
new 517749c factorize activate_proj function
new bfc488f FIX : fix proj['active'] mess
new 1d2961a ENH : add reject parameters in mne_compute_proj_ecg.py
new 9d1c2e1 ENH : append existing projections to generated proj in mne_compute_proj_ecg.py
new 70fc89b ENH : add average ref to mne_compute_proj_ecg.py and support for manual bad channels
new 77c7e89 update usage
new 3888322 Merge pull request #36 from agramfort/refactor_proj2
new 4158f69 ENH: warning for large currents
new 49322b7 Merge pull request #37 from mluessi/cur_warning
new d7da4ad API : clean up options in mne_compute_proj_ecg.py
new 8d5025f Merge branch 'master' of github.com:mne-tools/mne-python
new ac79afd ENH : add plot for noise covariance eigenvalues decay
new c356aed fix std not var
new 5d21b3b Merge pull request #38 from agramfort/cov_svd_vals
new e0f61f3 API : make Covariance inherit from dict
new 8786d8a ENH : new pick_channels_cov function
new 39dd68e ENH : add new function to regularize noise covariance
new 5a66d43 DOC: add mne.cov.regularize to an example
new 4cf4209 update waht's new
new 0a6fea3 Merge pull request #39 from agramfort/reg_cov
new b15d6f4 DOC : update install doc
new 504d484 FIX : fix negative triggers due to old neuromag system
new 46c676d preproc: ecg_proj rework
new f9fc4ac added missing files
new 13c2aa8 FIX : fix writing of inv op obtained with make_inverse_operator
new 7981d00 Merge pull request #41 from agramfort/fix_make_inv_methods
new 3b776ce EXG proj
new cdffe53 EXG proj
new f23fd8a maffilter wip
new 602fc1d FIX : fix writing of inv op for mne_analyze + refactoring
new 3025cf1 Merge pull request #42 from agramfort/fix_write_made_inv_op
new 6c85101 maxfilter, EOG SSP computation
new 41f3d55 code cleanup
new 6c191df added tests
new 8f7ca56 typos and cosmetics
new e403e1b ENH : changing filtering default parameters + adding option to pass ECG proj in mne_compute_proj_eog.py + adding EXG name to SSPs
new bf56288 Merge pull request #1 from agramfort/preproc_refact
new 676354b Merge pull request #40 from mluessi/preproc_refact
new 669b2c8 update what's new
new df0f197 adding neurospin path to sample data
new 7d8f88c Added mne_maxfilter.py, proj argument in proj_ecg script, setup.py
new bf1f614 updated whats_new
new b55fac5 added comment
new a769da3 Merge pull request #43 from mluessi/preproc_fixes
new da11aac define option types
new c066d3f Merge pull request #44 from mluessi/opt_types
new c1893aa opt. to use dif. file for event det.
new 449f0bb Merge pull request #45 from mluessi/raw_event
new 2440bc8 add warning in ecg.py
new b216df9 Merge branch 'master' of github.com:mne-tools/mne-python
new fc767b8 ENH : expose qrs_detector params in mne_compute_ecg_proj.py (add --tstart option)
new c8941dd clean up
new f34a4b9 Merge pull request #46 from agramfort/ecg_detect
new 3b90fef FIX : fix hemisphere identification with full path in read_label
new 0dd43ea FIX : fix filter with low high pass freq
new 7a2b200 FIX : fix Epochs with reject=None and epoch at the end of file
new de823d0 ENH : nicer plot of PSD in examples
new fd939de ENH : new Raw.filter method to simply filtering
new 9e079fb ENH : add tmin = tmax to compute_covariance
new a1ed363 DOC : improve example docstring
new 99e8c0b ENH + API : add support for sLORETA to apply_inverse, apply_inverse_raw, apply_inverse_epochs
new 7c57b93 Merge pull request #48 from agramfort/filter
new b5a724b merge conflict resolved
new 6e00213 typos
new 4f7d7e6 Merge pull request #50 from agramfort/sloreta
new d17d730 ENH: pick using named selection
new 91a2ef9 selection file added
new 0b62f1e Merge pull request #51 from mluessi/pick_selection
new 16832eb ENH: rework of selection
new 72bd4ec added selection.py
new cf818c8 typo, beautification
new 9b0aadd whats new
new 4e5ed0b Merge pull request #52 from mluessi/pick_selection_rework
new 2923459 ENH : add implementation of LCMV
new 5cf2e7d DOC : better lcmv docstring
new a11e228 FIX : Backporting scipy.signal.firwin2
new 6c25cd8 Merge pull request #53 from agramfort/lcmv
new 13a83e6 TST : adding test in firwin2
new 587ee2b Merge branch 'master' of github.com:mne-tools/mne-python
new aa194a2 use built-in set
new 8d7e0de Merge branch 'master' of github.com:mne-tools/mne-python
new 5c6205b ENH : speedup + reduce memory of morphing
new 8056436 Merge pull request #55 from agramfort/morph_buffer
new c656aa8 ENH: filter trans bw, warning
new 60d61a8 low and high trans_bandwidth
new b1a56f6 Merge pull request #56 from mluessi/filter_enh
new 68acde5 FIX: do not use parallel if n_jobs==1
new c8bb5ab Merge pull request #57 from mluessi/tfr_parallel_fix
new 46ba514 ENH : add support for n_cycles varying with frequency
new 2e193c6 FIX: bug in print output
new 34add6f ENH: proj support in compute_raw_psd
new e915ad0 ENH : add basic support for temporal whitening with AR model
new 567538e Merge pull request #58 from agramfort/tfr_improvement
new 80d2dad ENH: warning if sample dataset old
new d4cfece new size of sample data
new ab71896 lazy import comment
new 74e9718 Merge pull request #61 from mluessi/sample_version
new fd0d62b ENH: raw.add_proj, updated example
new 9814673 bump version number
new 7565056 correct freq. range
new 7962858 proj idle/active handling
new bc5af6a use include_active
new 726c4ca Merge pull request #59 from mluessi/compute_raw_psd_proj
new 6792b09 FIX: wrong number of proj
new 8bab411 Merge pull request #62 from mluessi/proj_fix
new 61f688a doctest fix
new 4b74e63 Merge branch 'master' of github.com:mne-tools/mne-python
new 4e948cf ENH : new option to have morlet be zero mean (relevant for low number of cycles)
new 691bec2 Decreased verbosity when reading events from Raw objects.
new 6d40f6d verbose flag defaults to True np.abs now properly called in mne/fiff/raw.py
new 3e4e5a4 TST: add test on morlet
new 6a0aa9d Merge pull request #63 from agramfort/zero_mean_morlet
new c7a878e Added docstring entries for verbosity flag.
new 4ab6fff Fixed accidental editing of docstring for write_events in mne/events.py (sorry!)
new fe401b9 add *.pyo to gitignore
new 52fb2f0 FIX Epochs.average(): use correct n_events when preload==False
new 4afa43d TST : add test for n_events average fix with no preload
new 6088e97 Merge pull request #64 from louist87/master
new 879baac fix tutorial doctest
new 7accfa6 ENH : clean up the raw.verbose option
new 9ae6870 Merge pull request #1 from agramfort/cmb-epochs-average-fix
new 775e897 Merge pull request #65 from christianmbrodbeck/cmb-epochs-average-fix
new 4676d83 ENH : stft with tight frame and sine window
new 8f985c1 ENH : new stim artifact rejection function
new a3d41d4 TST : better tests in stim artifact
new 37256a2 ENH : pass sfreq to stftfreq
new 488f368 fix doctest
new 6acb9de added Alex's comments
new 4a3696f removed duplicated code
new d3cfc4f added check if preloaded is true
new 0a3d400 modified changelog in whats_new
new 5250dbf deleted empty line
new d9e2bfa Merge pull request #66 from agramfort/stft
new 55fb036 changed array to tuple in call to interp1d
new a7c064d Merge pull request #60 from agramfort/time_whiten
new c339669 ENH : new simulator (WIP)
new eea3d62 ENH : big cleanup of simulation code + new plot function for sparse stc
new 0a4c44b ENH : cleanup and remove duplicated gabor atoms code
new 0793fb0 ENH : simplify evoked data generate + some docstring updaes
new 436efac ENH: generate circular labels
new 8a3accd ENH: also retrun distance
new 53480e5 API : rename to generate_sparse_stc
new a075c40 rename sim_evoked.py
new 48d2bfa merged branch mluessi/simulation
new 02dc8ec typo
new 8dc0042 evoked in separate file
new 5e66a38 added generate_stc
new 247916e Merge pull request #1 from mluessi/simulator
new 4c12dd9 ENH : simulation code refactoring
new dd42b2d fix tests + pep8
new 111bee4 Merge pull request #67 from joewalter/stim_artifact
new 88fdc49 style on stim artifact
new 47ab928 FIX: data order, whats_new, test
new 8593614 Merge pull request #2 from mluessi/simulator
new 77b480c Merge pull request #68 from agramfort/simulator
new bf7fa34 added bootstrap and crop function to epochs
new f03d078 made return of idx in bootstrap optional
new 8ba89d5 fixed idx in test_bootstrap
new a7331a3 added comments on the pull request
new 5f0e95b added atleast_1d support
new f64cf2c corrected bad doc string
new e3ddc42 Merge pull request #69 from joewalter/bootstrap_epochs
new 095f2f0 ENH : implement MxNE with L21 prior
new 395fafc ENH : better plot_evoked with ylim and tight_layout
new 4014c12 ENH : add MxNE example of sample data
new 903a20c ENH : add better debiasing as suggested by Daniel
new b9c5690 ENH : factorize _prepare_inverse function
new 3acb855 ENH : factorize is_fixed_orient and compute_orient_prior
new 86331de update changelog
new 822a8eb ENH : add refs + cleanup in MxNE
new e311952 Merge pull request #70 from agramfort/mxne
new 4e71fba added sim, mixed_norm to setup.py
new 4e40701 FIX : missing random_state passed to generate_noise_evoked
new 0293347 DOC : document python setup.py install --user
new 3ab7ace FIX : fix doc with nested import of pylab in psd.py
new e012e4c MISC cleanup old coverage info in Makefile
new cb42641 ENH : add example of LCMV on volume grid
new f5f8981 Merge pull request #72 from agramfort/lcmv_volume
new 8a76a63 tiny change in LCMV volume example
new e420093 FIX: fir->iir, time index bug
new e16fc1b iir->fir
new 4a2d23c Merge pull request #73 from mluessi/ar_fixes
new 6c72874 ENH : add function to compute source PSD from raw file
new fc2dd0e pep8
new 5bb1822 update what's new
new 91b6cd8 Import joblib directly if sklearn not installed
new fa39acb Merge pull request #74 from agramfort/psd_stc
new bda8a2d Fixed indentation error
new c91b329 Merge pull request #75 from bburan/joblib_import
new db09465 ENH: LCMV for raw data
new 1e73c0d FIX: reg. if cov. is subset of channels
new de08911 FIX: don't use index() in loop
new df4b1e5 whats new
new 8966cfe DOC: note on brain_vision2fiff
new fd35c30 code cleanup
new 86e834f Merge pull request #77 from christianmbrodbeck/cmb-doc
new 3cf4266 ENH: lcmv_epochs()
new 5546ab4 not heavily tested
new 073c7c2 rem. nested fun
new c12da25 Merge pull request #76 from mluessi/lcmv_raw
new 0d0bf8c ENH : new stft_norm2 to compute stft norm taking into account negative freqs
new 576f1ac ENH : no relative imports in tests (check proper install)
new d3c80dc pyflakes + pep8
new 29523ca DOC : misc
new d22cbb8 FIX : error due to incmplete renaming
new 792952b ENH : new sphinx extension for example gallery
new 52a67fb ENH : plot something in plot_lcmv_beamformer_volume.py
new 1b0ca56 DOC : update reference + fix some docstrings
new 6f1b184 Merge pull request #80 from agramfort/no_relative_import_in_test
new 7068159 Merge pull request #81 from agramfort/better_example_gallery
new f7789ed API: make sfreq, lowpass, highpass float attributes (not np.array)
new 6073ba1 Merge pull request #82 from agramfort/sfreq_as_float
new 173b67a typo
new eff9ace typo
new 550e026 TST : add test for evoked simulation
new 07a86d6 Merge pull request #83 from agramfort/add_test_simu
new 7a1b19d bump version number to 0.4
new dcb62be change rsync path
new 7bf5070 add mailmap for cleaner git history
new 0e021d3 adding number of commits to 0.4 changelog
new 0cdb077 bump version number to 0.4.git
new 3b5a12c ENH : nicer long description
new fd49899 Epochs inherits raw.verbose
new 9fb5059 ADD verbose to Epochs.__init__()
new a454a20 Merge pull request #84 from christianmbrodbeck/cmb-verbose
new 42baa8e FIX : shape problem in coil_trans eeg_loc in meas info (not critical)
new d874514 ENH SourceEstimate
new 58c75cb Merge branch 'master' of github.com:mne-tools/mne-python
new b061099 ENH : adding missing FIFF constants for @dengemann
new 7241fd8 ADD: Label class
new dc8caff FIX write_label(): filenames
new 1506fcb ENH Label.__add__()
new 0d88caf Fixing little Bug in fiff/constants.py The new fields added were not bound to the bunch object
new 9388532 Merge pull request #85 from dengemann/fix_constants
new fbff051 Fixing (my latest fix) fiff.constants.py There still was one unbound constant, now it should be fine.
new be8c01c Merge pull request #86 from dengemann/fix_constants
new 15abd20 ENH : read .dip dipole fit output + viz + example + test
new f65a121 update what's new
new 5cf71cb typo
new 88539ec better docstring
new d8be3a8 Merge pull request #88 from agramfort/dipfit
new 2e57bb6 ENH : better dipole fit figure with color coding for dipole time
new 93667fb ADD: SoureEstimate.bin()
new 55e7439 ADD: SoureEstimate.get_surfer_stc()
new d89b1f0 ENH SourceEstimate
new fbe0106 ADD: Label class
new e99c23b FIX write_label(): filenames
new c7e7796 ENH Label.__add__()
new 78b3f3b ADD: SoureEstimate.bin()
new 2a9f806 ADD: SoureEstimate.get_surfer_stc()
new 7f29b2b Merge branch 'cmb-label' of https://github.com/christianmbrodbeck/mne-python into cmb-label
new 1480440 DOC
new 6585dd2 ENH: multi-taper PSD estimation
new 43119c3 ENH: option to split inv. op
new a18b00b FIX: bw_norm, cleanup
new 0fe92be FIX: NW in dpss_window is norm. bw
new dfcf000 Merge pull request #89 from mluessi/multitaper
new 0a81c39 FIX: use half bandwidth
new 7f48fcb Merge pull request #91 from mluessi/multitaper_bw
new 7085a15 MOD: Label subclass of dict for backwards compatibility
new e366896 Added exception that prevent users from corrupting their files when trying to save changes to the same file using the same fid. Also one minor pep8 fix.
new 42e339e ...
new b5ba851 Minor nicyfications.
new 61baef4 Merge pull request #93 from dengemann/raw_save_exception
new 24a6f9c DOC: typos
new 468c42a Merge branch 'master' of github.com:mne-tools/mne-python
new 3bb8193 ADD: read_source_estimate() function
new 8261b86 DOC
new 5e610e1 ENH SourceEstimate.label_stc()
new e9ddd22 ENH: Label that can represent both hemispheres
new eefc833 depreacate SourceEstimate initialization with None or filename
new bceeea3 fixed 'reference before assignment error' which occurs as the user tries to read in already compensated data from ctf or 4D.
new 3b90fdf cleanup..
new 1d45d90 DOC
new ca2ec60 SourceEstimate: substitue attributes for get_surfer_stc()
new 13e9e5a FIX: SourceEstimate.rh_data()
new f29381f rename label classes:
new b00d0f8 Merge pull request #96 from dengemann/fix_ctf
new 08d5453 FIX: deprecation message
new c1dbb22 FIX read_source_estimate
new aff161d MISC : getting rid of remaing pdb
new 377bba4 API : new Raw.proj that allows to apply SSP projections with accessing raw data
new 65e20b8 WIP: Adding EOG parameters and continuous projection
new 7189fea WIP: Minor fix
new 4f956ca Adding options and testing scripts
new b3198a4 WIP: Minor fix
new 60dd531 Addressing issue #92
new bd73c9a Adding more graceful handling of no ExG events found
new e1d1098 (Mostly) cosmetic updates
new b1634cd Potentiol changes to tag.py due to numpy regressions
new 0b2895c pep8
new 9c50f71 WIP: Adding make_eeg_layout
new 7a53ede WIP: Adding make_eeg_layout
new 4ab98d5 WIP: Minor fix
new 2c7c284 Implemented Mattis code
new 84586af Fixed implementing Mattis code
new a5a42da Conforming to standards
new da405b0 Adding test case
new c876f27 API : refactor Layout and use new read_layout
new 3800b2b Adding raw.load_bad_channels
new 1b3324e cosmit
new 0f92be7 Updating event reading
new a5913c9 Adding test cases
new 1094380 STY : pep8 + tinu simplifications
new 6bdf51a FIX: saving src space when use_tris is None
new e236003 adding note of preload
new cd807e0 Minor bugfix (handling one event case)
new dae4886 Minor fixes, adding test cases
new 36743f0 removing debugging line
new 4dd9a42 cleanup: replace SourceEstimate(fname) in examples
new ab60678 Merge pull request #116 from Eric89GXL/read-events-bugfix
new 3641b86 FIX : reading raw with C-HPI channels + fix bug in Epochs when picks=None
new 0370f6a FIX test (SourceEstimate arg name)
new 0dcf2f9 deprecate: labels represented by dict
new 89cb94d DOC
new fd83034 cleanup
new a23d3d3 FIX Label: avoid internal triggering of deprecation warning
new 348a15d ENH: plot method for evoked object
new 43d946f ...
new 7177a66 Added plot method for enhanced convenience
new d35d25a ENH: added docstrings and made explicit all keyword arguments from viz.plot_evoked.
new 7b2b741 WIP: cleaned up my last addition.
new c2eb109 FIX : Evoked.plot passing of arguments
new 687acea FIX : fix some warnings in tests
new 95a97c7 ADD test: SourceEstimate.label_stc()
new fca4292 DOC: add __init__ parameters to class documentation
new 5630990 where it was before
new 07e225a adding test cases and minor fixes
new 1488435 Speeding up with preload and reduced events
new df6bd1f A little faster with only one Raw() load
new 6277259 misc
new 89d9bb5 pip git with --user to simplify install
new 3f32330 FIX Label: convert input arguments to arrays
new 8c62439 FIX Label.__add__(): sum values
new 16c1cf0 Adding hashing and error handling
new 900b4db Private naming
new 732d41c Adding reload option
new 74356dd Fixing raw saving regression (inactivating)
new 8079633 Resampling using scipy
new b8793cb Cleaning a bit
new 222311a Actually testing what I mean to test...
new 343547b Cleaning up
new 60ba1fc Cleaning up more
new 7bf0458 Adding aliasing test, changing window to bmn, changing padding
new 2f4335a Improving resample, adding to epochs and evoked
new 8ac9b33 reverting minor error
new d4e261e Multiple updates and useability fixes
new b1c5006 STY: cleanup on resampling (pep8 and use of np.arange)
new f28a4a7 update mailmap + authors
new 951be3c update what's new
new 97149fb FIX : make sure we get times as float when sfreq passed is int
new a016865 FIX + STY: fix test of proj with epochs, sty in raw.py
new e9cdd6d Making more explicit
new 38f87aa Making more explicit
new bf19e42 Clarifying add_proj() function
new fe27dc1 Clarifying add_proj() with remove_existing
new 9a21668 ENH SourceEstimate.bin()
new c2fad08 ADD: tests
new 272f34a API : removing reload_data_from_disk
new 7f3efbf Merge branch 'master' into fix_raw_proj
new 626590b ENH+FIX: Parallelizing a bit and fixing error where all epochs are dropped
new 2b7e465 FIX: Addressing test_ssp regression
new 0051c6b update what's new
new 458311d Merge pull request #109 from agramfort/fix_raw_proj
new fe56601 STY : cleanup and make a copy to avoid bugs
new 99662e1 FIX : test due proj handling in epochs
new aadf073 pep8
new 12ec9ed Merge branch SourceEstimate / Label improvments (pr #90)
new 3b0cf2d FIX : fix regression in apply_forward + set raw._update_projector as method
new fd36e31 FIX: Bye bye tests (unnecessary)
new 5218518 Merge pull request #128 from Eric89GXL/ssp-parallel-fix
new 8c00d5b ENH: Adding multiple raw support
new 197ec75 FIX: Errors and adding test cases
new 75abfff FIX: Fixing test case speed, dealing with int __getitem__
new 10e5c18 FIX: Fixing regression and adding files to gitignore
new b0f61eb ENH: Adding concat_raw() and Raw.concat() methods FIX: Adding a test case, cleaning names FIX: pep8 ENH: Adding epoch drop_log ENH: Adding support for raw with different projectors FIX+STY: Littly fixes, plus splitting test files locally
new c806926 FIX: Remove extra print statements
new c0b8c4e pep8 + pyflakes
new 6a534b4 update what's new
new d350cc5 ENH+FIX: Multiple evoked, dtype fixes
new 4b851c6 FIX: Fixing errors
new 3fc286c API : remove Epochs.std + cosmit + API : rename Epochs.stderr to Epochs.standard_error
new ce029f6 update what's new
new 9aa56ce API: new as_data_frame method
new 08f9cd8 API: data frame example for epochs
new b57a83d cosmit
new 339f8c7 for proper doc generation
new 4f63dfa ENH: as_data_frame: choosing more appropriate index names
new 2038afd ENH: improving examples - more clearly demonstrating pandas hierarchical indexing - adding plotting parameters for neater plots - editing comments
new e5d171e ENH/FIX: - fixed broken examples, it now works again. - added a primer on pandas to the doc. I'm not sure whether this is a bit 'über'. Comments are highly welcome.
new ce068c3 FIX : pandas example
new 384e515 FIX/CLEANUP docstring
new 6a7eff6 FIX: _make_stc no longer exists
new 6d71110 Merge pull request #139 from dengemann/data_frame_doc
new ad8cc04 FIX Epochs: preload=True
new ce4e1d9 Merge pull request #143 from christianmbrodbeck/preload-fix
new a689762 Merge pull request #140 from Eric89GXL/minor_fix
new e0e56b1 FIX : mne_compute_proj_exg due to change of function signature
new 8309e70 FIX: raw dtype, preload
new c8c8af5 FIX: doctest, verbose
new 0252169 Merge pull request #147 from mluessi/raw_doctest_verbose
new 04feebe FIX: avoid duplicate EEG proj
new f4bc18b ENH: Raw proj handling
new ba49a7c FIX: Nosetests werent testing correctly
new 49e7051 Merge pull request #150 from Eric89GXL/cov-test
new a8e8738 ENH: Adding exact test, halving time for tail == 0 case
new 36bab0c ENH: Clustering by sign for two-tailed tests
new a629f28 ENH: Adding src dist support, dist connectivity
new faf3d57 FIX: Adding equivalent commented code for distances
new 89e3f44 ENH: Adding optimized spat-temp function
new 822055e FIX: Minor fixes
new f899dcd FIX: Minor fixes
new 88a0a64 ENH: Speeding up
new 1115ae3 FIX: Nasty off-by-one error
new 53562cc ENH: Adding basic test cases
new c264553 FIX: Adding missing docstring
new 9a3c42b ENH: Adding vertex to MNI code
new dcfdef7 ENH: Step-down-in-jumps, partitioning, excluding
new ef185e1 STY: Making more readable
new c7bcdf2 ENH: refactoring _get_clusters to reduce memory and speedup computation
new 107e849 ENH: 5-10% speedup
new aeec442 ENH: Adding spatial and temporal center-of-mass
new 32cb511 ENH: Adding t_power option
new c62d6a1 FIX: Fixing regression
new 0a532b1 ENH: Adding out_type option to save memory
new a8f4687 FIX+STY: wrapper for wrong scipy version, + pep8
new e5363bd ENH: Adding parts of PR 99 to save memory
new 7136f14 FIX: Minor problem with permutation
new ac4a9b9 ENH: Minor speedup for t_power == 1
new 715260c FIX: Silly print
new 6948970 FIX: Was returning list of len 1
new 740e354 WIP: Label smoothing
new 2731b8c WIP: Minor tweak
new b461bd2 FIX: Nosetest regression, pythonic style
new 23970ff FIX+STY: Adding more informative docstring and error msgs, cleaning code
new 278244e FIX: reading fwd failed due to newer numpy version
new 92714a9 STY: Clearer variable names
new cfe27d1 FIX: nosetests / doctests failure
new bc09ab4 STY: More cleaning
new 8f87b8a FIX: Test used old parameter
new c7323fe FIX: Privatizing auxillary function
new 4717d48 FIX: Clarifying out_type
new abaf3ae FIX: Adding nosetest for vertex_to_mni
new ee07eb1 FIX: Adding simple nosetest for stc.center_of_mass()
new eaeb1b8 FIX: Spelling
new b2e5e23 FIX: Cleaning comments
new fdd5e09 FIX+ENH: Adding morphing options, speeding up morphing, adding nosetests
new 250dd73 STY: Cleaning up a bit
new b96e605 ENH: Adding automatic disjoint testing
new 97ee5a7 FIX: Forcing subject parameter to be entered
new 0c130ce FIX: Stupid English
new 07e2763 STY: Pythonizing
new 1a67cdd FIX: Better env handling
new e261eaf FIX: Reverting to old T_obs shape for now
new 14a010f FIX: Making consistent with old treatment of shapes
new 7fce92d FIX: Making consistent with old treatment of shapes
new 3a065f8 ENH: Making cluster accessing better
new 8e0f5aa FIX: Fixing regression
new 3168630 remove projs attribute
new ae1eb36 FIX: Adding docstring
new f6607c3 FIX: Fixing docstring
new 0e18a60 FIX: Clarifying docstring
new 9d8c0d5 FIX: Missing paren
new bbba79d STY: docstring
new 4222306 Merge pull request #134 from Eric89GXL/spat-temp-clus
new 4f820d4 Merge pull request #149 from mluessi/raw_proj
new ddaf02b FIX: cov raw test
new 1d3c0ce Merge pull request #151 from mluessi/fix_cov_test
new 82c904f WIP: ICA decomposition for Raw and Epochs (cleaned branch)
new 4c94340 WIP/API: refinign API, adding epochs support
new 522d514 WIP/FIX: Adding full support for epochs ica - created EpochsFromMerge class along the lines for RawFromMerge - added copy arg for denoise_epochs - updated example
new 00f84c6 ENH : first iteration over ICA code
new 4cbd013 ENH: Second iteration - cosmits, tiny pyflakes
new 2cdaf0a ENH: next iteration over ICA code
new de41539 ENH: Next iteration over ICA code
new 59912a9 ENH: cleaning up - dropping sort buffer / history, turns out to be unnecessary
new 9f7caa6 ENH: next iteration over ICA code - tiny fixes - restoring the raw example - making nicer comparison plots for raw data re/recomposition
new 50751fe ENH: polishing api / examples. - moving examples to preprocessing - dropping property - enhancing _check_picks - moving to included/excluded terminology, dropping bads / picks in the context of recomposition
new 3656eae ENH: ... moving files
new 2065be7 FIX: nasty indexing bug
new 629f04a WIP: first test for ica.py - invoking the ica methods - for noise_cov and pseudo-whitening - performing simple assert statements for ica results
new 99adeaa FIX: fixes based on tests
new 9b8dc63 FIX/ENH: removing confusing conditionals in ica._chek_picks - now either you re-pass the fitted picks or you don't - either way the fitted picks are used
new b0e89a5 ENH : cleanup of ICA code + test + examples
new 5a441f9 ENH: big cleanup - removing unnecessary magic - thinning out the sort function - adding support for source-sorting on 3 dimensional arrays as draw from epochs - adding sorting tests - adding docstrings to viz (finally ;-)
new 1630c40 ENH: cleanup - tested n_component is None case - updated __repr__ - included some FastICA parameters in the __init__ in order to increase flexibility
new 09a2ebe FIX/ENH: resolved epochs issue - sources unsorting was missing [very ugly]. I added a commented line that allows to check for the resort. - added some comments to the code - removed suprfluous private function - properly implemented include - dropped picks from everywhere but decompose. As there is no degree of freedom with regard to the channel structure once a decomposition has been perfromed leaving an option does not make sense. - updated examples and tests
new 72924a7 FIX/ENH: savely removed the sorting bug - added extensive sorting testing - removed confusing sorting arg on pick_
new 5f8d68d ENH: cleanup - removing debugging-print-statements - fixing tiny issue with whitener: scalar (total std) isntead of vector (std alongside axis 1) - adding test for 'include' arg - keeping the original data's ylim for the cleaned data plot. - running everything again
new a69eaea CLEANUP: docs and cosmetics
new 911ddd3 ENH: polishing / various enhancements - ... the docstrings - ... the unit tests - simplying raw.copy - adding tests for raw.copy - improving epochs.copy now copies its rawfile and attaches it to new - adding tests for repochs.copy - adding new example that compares the affected MEG 1531 before and after ICA cleaning. - re-run everything multiple times
new c346e09 ENH + DOC : add some default params + prettify some docstrings in ICA
new 4b2470e update what's new + python reference
new 64982c2 ENH: nitime support for sensor level data
new 51df772 FIX/ENH: completing doc, improving examples
new 4f4a605 ENH/FIX: removing superfluous indexing code from raw
new 604b92e ENH: next iteration over nitime support - fixing doctsrtrings - adding index_to_time as 'inverse method' of time_to_index - adding docstring to time_to_index - adding ch_names to nitime exported arrays - extending the raw_nitime_example - demonstrating raw_ts instance methods - calculating and plotting multitaper power spectral density from selected channel
new 8b956c4 ENH: extending epochs example with coherence analysis - adding new export parameters - concatenated ==> 2D array (required by some nitime functions) - epochs_idx ==> export selected epochs - example that calculates and displays coherency of 20 gradiometers
new 280874d ENH: tiny edits / finalizing coherence example - adding comments - invoking plot command for auto plot
new 99eaa9b ENH/FIX: cleanup and adding tests
new bfbafe2 ENH: improving test names -- the now have distinct names. namespaces are fine but I think this is better for interactive testing -- also added licencse text to test files
new dfc3a42 ENH: adding exception handlers to nitime exporters to avoid strong dependency
new 7f4119f FIX: fixing exception messages
new 294b9c6 ENH: tighter exporter code, pmroved docstring
new 7451511 STY : misc on nitime export
new c0370b6 ENH + WIP: doc strings
new 78c91f4 Merge branch 'nitime' of https://github.com/agramfort/mne-python into nitime
new c04cb0d ENH + FIX: unifying docstrings, simplifying code, accounting for relative timing + udating examples
new 35329a1 ENH: Next nitme iteration - new time <==> index conversion methods - deprecated time_to_index - replaced it in all files found via git grep with its successor - added tests for both methods - little fixes
new 1392ac9 ENH: updating test
new d23c075 FIX: removing whitespace from test_raw.py
new b12cf11 FIX: including datasets in init - on a new clone of mne all examples failed because this was missing. Could someone reproduce this? Anyways anyhting against including the datasets module here?
new 1e449b9 FIX: adding other missing modules to mne/__init__.py
new 7763ce7 ENH: removing nonmodule directories
new b6a7cf8 Merge pull request #152 from dengemann/mne_init
new 3cb3f05 Update doc/source/whats_new.rst
new eaf0ea2 ENH: time_as_index / index_as_time --> returning ndarray instead lists
new d177b40 ENH: polishing + updating whats_new.rst
new 683837f STY: cleaning previous edits
new 3221f76 Merge pull request #142 from dengemann/nitime
new 4955298 FIX: ICA for sklearn < 0.11
new 4d94ead cleanup
new a53d279 cleanup
new eb8dddd FIX: typo ind ecg example, ECG instead of EOG
new c2a9803 Merge pull request #156 from dengemann/ecg_doc
new c7fd25e Merge pull request #155 from mluessi/ica_sklearn_old
new 3336379 ENH: plot time-frequency representations on sensor layout - 2 user functions for power / phase lock - private function that does the actual job - example
new 7cfea5d ENH: added dB arg to plot_topo_power and made basline rescaling optional for both user functions. Also I updated the example. Now the the time_frequency example can be reproduced.
new f785ac7 FIX : fix vmin and vmax not pass to imshow + cosmit
new 76e4a3a update what's new + python reference
new 875cd00 FIX: index_as_time should return int array (but it did not...)
new 7fdc936 Merge pull request #157 from dengemann/fix_time_index
new 13a5350 FIX: Nosetest
new b04beb0 Merge pull request #159 from Eric89GXL/nose-fix
new 0037511 FIX: Missing files in egg
new 999af96 Merge pull request #160 from Eric89GXL/egg-fixes
new 78cba49 ENH: Three types of inverse operator
new 61aed6e STY: Fix
new b2ae219 ENH: De-pythonizing
new 65e25c1 STY: Clearer code
new 12c0ee5 FIX: Consistency
new ff59061 FIX: Consistency
new 99d7df6 cosmit
new 4c381e1 ENH: Refactoring morph_data and adding functionality
new 57f822b STY: Minor fixes
new 4096b7b FIX: Dealing with non-csr matrices
new b0c616a ENH: Adding example
new 40a6d53 STY: Fixes
new d67a9ea STY: Minor fix again
new 6de32c6 STY: Removing lines
new d071544 ENH: Adding doc
new f62025e FIX: Import numpy
new ab4fdb5 FIX: Numerical errors?
new 7526696 FIX: Reverting
new 1201fb8 Merge pull request #153 from Eric89GXL/morph-refactor
new 8558c33 STY: Making nosetests more uniform
new 4a9c6e9 Merge pull request #162 from Eric89GXL/cleanup-tests
new 2e32ace ENH : add new function to make ERP/ERF images
new 6a3a793 ENH: Adding event concat support, catching up reference
new fd9e836 FIX: Minor fix, forgot mne-python did this better
new 2806b38 ENH : add explicit pick names
new b6f75ff ENH+FIX: Speeding up test, adding len() method, minor fixes
new de528f1 FIX: Adding mne_process_raw extracted events
new 22dba3b FIX: Dealing with mne_process_raw event files
new 94deb62 STY: Dotting
new 165223d STY: Let no line go undotted
new 9b9242b Merge pull request #164 from Eric89GXL/concat-events
new 7642fd1 DOC : add note about the 2 plots + update what's new + update python ref
new 784edd8 Merge pull request #163 from agramfort/erpimage
new 0867f02 Hi folks, I significantly refactored the ICA code and the underlying machinery and option landscape to allow for neater and more (num)pythonic ICA handling. Also the changes imply gains in stability. As is now the ICA procedures provided are less error-prone. I also think the code is much better readable now. Let me summarize whats's new:
new 0c47d30 ENH : speed up tests, misc, pep8, tiny bug fix
new 2e89736 API : rename sort_args + fix in example due to previous commit
new eb872e4 typo
new 9163a1d DOC : update python ref with ica_find_eog_events, ica_find_ecg_events
new 0f775b8 ENH: adding sensor layout plotting function for ERF-images - adding example - improved plot topo imshow to be more generic. It now does the layouting and leaves the image production to the show_func that can be passed e.g. as partial function.
new bd1ba0e MISC: simplify example (global order does not make sense) + typos + add function to reference
new 5c15f0c FIX: cleaning up example, pyflakes, removing show arg for the sake of consistency
new 035bb48 FIX: readding colorbar arg passed
new 4829f37 ENH + FIX: data for ERF images should be copied.
new 5663f8d FIX/ENH: adding name-cleaning function to warrent compatibility across MEG systens.
new 2d775c6 FIX + ENH: optimized _clean_names + added extended doc string.
new 7faab2c Merge pull request #172 from dengemann/fix_layout_names
new 54c92c0 FIX: replacing fig.show with pl.show(fig) to achivie compatiblity with certain ipython versions and the current EPD release
new 5f8c6aa ENH: displacing the import statement inside conditional block
new 9d15ba2 ENH: removong outdated sort_func arguments from ica_doc strings
new ef0cb85 Merge branch 'master' of https://github.com/mne-tools/mne-python
new 8d01598 ENH: Adding verbose options
new 63f7682 ENH: Adding verbose arguments
new 4eda33f ENH: Better logging
new 9cad2a4 STY: Too many newlines
new c1056e9 STY: Updating references
new 3c76641 FIX: Fixing merge regressions
new 76d5972 FIX: Little cleanups
new 6e561c9 FIX: Adding verbose options
new ea5ad2b ENH: Reading ENV variable
new e77768d FIX: fixing compute_proj_raw not rejecting based on EOG, etc.
new 152ffd2 ENH: Making logging better
new 509beeb ENH: Better logging
new f62aa96 FIX: Allow pickling, missed lines
new a45e1a4 FIX: Improving class detection
new 0175d59 FIX: Missed some verbose spots
new c96396d FIX: Adding test for proper (file) logging
new a66e860 FIX: No logging during nosetest
new 33ec118 FIX: Minor bugfix
new 3fe494a ENH: Adding (default) file appending option
new b71dc6b FIX: Adding test file
new a05387d FIX: Send to stdout instead of stderr by default
new f2120e8 FIX: Making doctests more complete
new 5d12b74 FIX: Working around doctest magic, fixing doctests
new 77c5b5f STY: Making test clearer
new cbcd51e FIX: array_hash not used anymore
new c18272d FIX: little fix on ica plotting methods related to ipython patch
new c4c60cf FIX: __repr__ bug if n_components is None
new 03dada8 FIX: bug-succession, wrong parenthesis
new 10edae8 added some fiff tags
new add7031 Merge branch 'master' of github.com:mne-tools/mne-python
new 055e81c FIX Label.__add__()
new ca1db38 Merge pull request #176 from christianmbrodbeck/cmb-FIX-Label
new ad0f850 FIX: compatibility for BiHemiLabels
new 616a8e4 ADD: test for label_src_vertno_sel() with BiHemiLabel
new 167fafe CH: number of channels add drop_log
new f072050 FIX: test
new 84eb626 Merge pull request #178 from christianmbrodbeck/cmb-fix-labels
new afbc21b FIX: indexing
new 6fbaa00 Merge pull request #179 from t3on/tb-fix-channel-reject
new 5f32772 FIX: didnt work if idx_deltas = [0]
new 1778177 Merge pull request #181 from mluessi/fix_is_good
new fc064f0 ENH: support for exporting ICA sources as raw data and sacing to fiff
new 0e67a8c MISC : unecessary import
new 8ad5f48 FIX: removing outdated ._sort_idx attr and restoring self.index functionality for the case of n_components == None
new 1df825b FIX : Take into account that FIFF_FIRST_SAMPLE may appear after data skip as well
new c90f2a8 ENH: Adding example, epoch EQ, etc
new 55fcede FIX: Making improvements
new 1303385 FIX: Making improvements
new e8d8eea FIX: compute_morph_matrix return
new 92c2ee7 FIX: Making it faster
new 209bcb9 FIX: Adding nosetest
new 1739c5e FIX: Bug
new e8cfc93 FIX: Many fixes, reveritng inverse changes
new 258b999 FIX: better comment
new 3f07029 FIX+ENH: Making example better, adding colormap
new c675ac7 FIX: Making plotting better
new 15ac97c ENH : polish and attempt of simplification in example
new 73f6990 FIX : dof in spatio temporal example
new 844ba51 FIX : fix for old numpy (< 1.4)
new c2ad41b typo
new 27e832e Merge pull request #186 from agramfort/fixes
new 7b0ce40 FIX : backport multi indices unravel_index to old numpy
new 232a6cf FIX: Minor errors in t thresholding
new cb82e93 API : removing array param to compute_morph_matrix
new 2aa6323 ENH : plot whitened evoked
new a2d1f98 Merge pull request #187 from agramfort/morph_mat
new ec34884 refactor evoked whitening + cleanup example
new bfe9f35 pep8
new 4962982 FIX : use Evoked.plot and fix it with hline
new 0916499 ENH: Integrate RandomizedPCA with FastICA
new b631883 FIX + ENH: updating / fixing the example doc strings
new d137921 ENH : addressing nitpicking from @dengemann
new be714ec update what's new
new e263521 Merge pull request #47 from agramfort/whiten
new 35ae4b9 FIX: missing update
new 336383e FIX: undo last commit
new a9499b4 ENH: improving ICA parametrization - adding catches (and regressions tests) - improved naming - updated and checked examples and tests
new 5c17998 CLEANUP: docstrings parameter description
new 35ffa5c FIX + ENH: intermediate commit
new 261f91e ENH + FIX: Added extensive systematic testing for different parameter ranges and combinations. - Fixed a series of bugs emerging in certain corner cases.. - Added more catching to avoid certain corner cases instead of adding magic. E.g. now in one ICA session only one decompositions is possible. For decomposing epochs afer raw was decomposed the user now must start a clean ica session. Otherwise we would have to deal with a hidden 're-init' function that re-initializ [...]
new b210b10 Merge branch 'master' of https://github.com/mne-tools/mne-python into pca_ica
new 2bb19f1 FIX: typos
new 99426ab FIX: typos
new 5ed82a9 ENH : misc and cleanup on ICA code
new 52fe391 ENF: merging PR from @agramfort + down-sizing test - removed None- picks / -n_components / -max_n_components cases from paramter scan loop which now should complete within a minute. Added a note add back those cases when developing new core features in the future
new ebf2dde ENH + FIX: found and removed the reason fot the warning, final cosmits.
new aa20e46 MISC : cleanup
new 5ec102e API : get rid of useless ICA.index attribute
new 52886d8 FIX : revert changes to pylab global settings after plot
new ea9f91f FIX: Fixing src_connectivity for sub-sampled src space
new 03a8ef7 FIX: Reducing redundancy
new d870e01 FIX: Enhancing warning
new 31937a9 FIX: Clarifying further
new 9490465 FIX: Old numpy support, windows support
new abe33e0 Merge pull request #189 from Eric89GXL/conn-fix
new a78b33f ENH: Starting...
new 81aa242 ENH WIP: Adding gz support
new f711ca9 FIX: Making it work
new 0c774f8 ENH: Speeding up by setting compression level
new 1dbfad8 ENH: Speeding up inverse reading
new 6592c40 ENH: Making faster
new ec4c992 FIX: Making raw clearer, undoing bad rebase
new 36cab41 FIX: nave wrong
new 0e82955 whats new
new 2374708 Merge pull request #192 from mluessi/fix_tf_nave
new 6781f9a FIX: random_state not sup. in old sklearn
new e99ccee Merge pull request #193 from mluessi/fix_ica_random_state
new 988f1d5 modified stft to delete integer division problem when (T % tstep) != 0
new 53102b9 Merge pull request #194 from joewalter/stft_edit
new bf13ead FIX: syntax error
new 829ffa7 API : minimum debias is 1 (should not decrease amplitude)
new e61e542 ENH: Speeding up ST clustering by 30%
new dc07b1a FIX+ENH: Adding (and speeding up) nosetests
new c6b0a61 style
new 1593cea ENH: Epochs() downsample kwarg
new 737400c FIX pick times: include t=0
new 32d4f0a FIX: Epochs downsampling
new 14d3f62 FIF: Raw.filter()
new b9af42a ENH: Epochs decim kwarg
new 743933a FIX: Epochs decim kwarg
new bfa7ca6 ENH : add min + max and some pep8
new 7af3447 ENH : cleanup old deprecated code
new 3acab91 Merge pull request #198 from agramfort/rm_deprecated
new 6d81ad6 ENH : removing useless min + max
new 189aeaf Update doc/source/manual/analyze.rst
new 3044e0a Merge pull request #201 from dgwakeman/master
new dea7fc8 FIX : fix mixed_norm with multiple evoked files
new 7274481 wip: connectivity
new 94f562d ENH: CSD methods
new 716160a ENH: coherency (WIP)
new 4893737 coherence, example, generator
new 6f4aa0f typos
new 0329798 imag_coh, better test
new 3386975 added freq_connectivity
new 04e9cd5 speedup using block-wise processing
new 1b11dc0 wip
new 741b041 multiple bands, fskip, faverage
new f72a355 parallel proc, cleanup
new 34f1018 tmin,tmax sensor example
new 72f445c typo
new bbc079a use visual condition for connectivity in example
new 0156d54 wpli, opt
new ab7f0a4 norm_fun 2 or 4 args
new a243750 cleanup
new d680f64 obj. oriented, wpli2_debias
new 235c660 cleanup, fft mode
new 86c7aee wip: cwt_morlet
new 66576cb cleanup, cwt_morlet example
new be78623 plv, typo
new 26b22bf review on connectivity
new 6265248 API : rename spectral_mode to mode
new f78a945 cosmit
new 7fbb862 replace Ellipsis by ...
new 1f75032 style + use zero mean morlet
new 20ebfea stc for both bands
new 5827a0f ppc, opt, .lout, coverage
new 644cc01 only install data/*.sel
new 5ad3e92 STY: Adding whats_new
new b4b7fa1 Merge pull request #202 from Eric89GXL/connectivity
new 8d2cc59 better whats_new
new eb7a425 ENH : support or IO of epochs in fif file
new c501a74 adding read_epochs to python ref
new f9d83af DOC: adding read_epochs to python tutorial
new db3fd47 ENH : add support of fif IO with 3d arrays + use it for epochs IO + use FIFF_MNE constants
new 98e0e25 STY: Minor cosmit
new cf3d2a4 Merge pull request #204 from Eric89GXL/fif_epochs
new cf1e74d update what's new
new 42736a2 ENH + FIX: better save same fname exception + test
new a4202a1 ENH: add abspath to Raw.__init__
new ee3429c FIX: Minor fixes
new 82a0af0 ENH: Adding resample to raw
new 25006fd FIX: Adding nosetest, speeding up tests, minor fixes
new 1e5bc23 FIX: Minor fixes
new 2c24aea FIX: Multiple files handled properly
new d0b4730 STY: Making clearer
new b8ac07d Merge pull request #203 from Eric89GXL/raw-resample
new 5314dd6 Update doc/source/whats_new.rst
new fa64801 ENH: clicking on chan in topo plot opens figure
new 908c954 gitignore: add some generated files
new ccb8abb DOC typo
new 703dbcc FIX: sample dataset download
new 3c35022 FIX: DOC & archive_name
new e06dbb5 Merge pull request #208 from christianmbrodbeck/cmb-example
new f5bc2a2 ENH: Merge artefacts with preprocessing - deprecated functions from artefacts exposed to the user - updated the examples - merged artefacts and preprocessing.
new 36f51a0 FIX: modifying new test paths
new 634f28d onpick for plot_topo, plot_ica_panel
new f6871f0 ADD: write_surface
new c97679a DOC: typos
new c2eb1e3 ENH: write_surface()
new 890f5fd ENH: write_surface() write arrays with numpy
new 03ec557 DOC
new 2cad03f FIX: import
new 24ff024 FIX: DOC
new 0350f2f DOC
new b301d4d move martinos sample data
new 975d3a7 ENH: write_source_spaces()
new ceaacb7 ENH : cleanup removal of artifacts modul
new 38fbe23 update what's new
new 30e231d Merge pull request #212 from mluessi/move_sample
new e71c607 Merge pull request #206 from christianmbrodbeck/cmb-coreg
new 1427000 Merge pull request #2 from agramfort/move_preprocessing
new 7dc45f0 Merge pull request #210 from dengemann/move_preprocessing
new 89379e3 Merge pull request #207 from mluessi/plot_topo_zoom
new 47fc5da ENH: more flexible type handling for evoked plots
new 564d0ae CLEANUP + COSMITS
new 524f3ff Merge pull request #214 from dengemann/support_misc
new c8b2b5b FIX : scaling in plot_evoked
new 92f0ac7 FIX : reordering of epochs due to sklearn update
new 32b7565 FIX: make ?? work for decorated fun
new a8c35ca dont use __dict__
new c9c1b6a Merge pull request #216 from mluessi/fix_getsource_verbose
new 0045004 Update mne/__init__.py
new d62691e FIX: Read and write source space patch and dist info
new 1bf321d FIX: Removing unnecessary addition
new 6601667 Merge pull request #220 from Eric89GXL/src-dists
new 9c1cd00 ENH: Generalize epoch images to handle custom data (misc)
new d665fb2 ENH : add fif tags on subject
new fe85389 FIX + ENH: Bugfix and improved exception handling for noise covariance in ICA
new 5c05314 Tiny ENH: deepcopy instead of test_cov.copy()
new da240c0 API : remove keep_only_data_channels and picks (more generic)
new 83e979d FIX: tiny typo.
new 06082ee Merge pull request #225 from agramfort/rm_keep_only_data_channels
new 3d1c670 typo
new c01a74c ENH: Parallelizing resampling for epochs and stc
new c8e03a4 FIX: Better style
new 2f48af9 FIX: Unnecessary line
new afb82bd FIX: Missing @verbose
new efb67d6 ENH: embed links in examples
new 2ae06f8 skip on exception
new 288dd96 fix build problems due to local/global mixup
new 427269d ENH: Using array_split
new 70bfa2e Merge pull request #231 from mluessi/doc_example_wikify
new ed682a9 Merge pull request #230 from Eric89GXL/stc-res-speed
new d3b9d51 ADD: read_trans(), write_trans()
new fab1acd DOC: add trans IO to python_reference.rst
new 4a658c3 Merge pull request #233 from christianmbrodbeck/cmb-trans
new 9349e8b cleanup
new 8dee46f rename test file for consistency
new 3eee984 FIX: source_space IO
new 9b72c72 ADD: SourceSpaces class
new 4f60837 FIX: SourceSpaces
new 9cc228a FIX: read_source_spaces_from_tree()
new 8875a2f FIX: read_source_spaces_from_tree()
new 7226f9a ENH: Speeding up nosetests, adding raw.crop method
new a7d5fde FIX: Fixing tests
new 4c6799e ENH: Speeding up nosetests
new 1658f4d ENH: Speeding up conn test
new 71362ff ENH: Speeding up, adding copy option
new 76e9554 fix docstring
new 8f34499 ENH (DRAFT): add dict features and support for conditions to Epochs
new 1d643a3 ENH: Dict features for Epochs.
new 285a203 ENH: improving docs, adding catches + tests
new c906742 ENH: setting name to Evoked on subsetting Epochs via label + topo Example
new 9ebd052 COSMITS + FIXES
new 9c85bab ENH: yet another exception handler for event_id
new 2b34046 FIX epochs test
new b4bab02 FIX + API: misc stuff to make tests run again (OK)
new ae4d450 ENH: example... forgot to add it.
new 475e222 ENH: better copy method for Epochs
new 67eafd4 FIX
new de58982 FIX: misssing assignment statement after indexing.
new 3cbbd53 ENH: more efficient indexing / slicing / subsetting
new 217ffee FIX: fixing last ENH.
new ba3b46c ENH: Neater and cleaner decision tree for @christianmbrodbeck
new ab18ce7 ENH: dropping unnecessary _get_events for @agramfort
new f013a63 ENH: adding support for list of eveoks to plot_topo.
new 4907b40 COSMITS
new 91f9fc7 COSMITS_II
new e455ec5 COSMITS_III + remove fixing stuff
new 800148b CLEANUP:
new 2c02745 auto download sample data by makefile
new de6ca18 FIX: tril_indices for old numpy
new c53c14c FIX: Addressing regression
new b0abdd2 Merge pull request #237 from Eric89GXL/event-fail-fix
new c48423d Merge pull request #235 from mluessi/tril_indices_backport
new 3f3986d FIX: Adding all events to proj desc
new dfedec5 ADD: Example for combining labels
new 818a5c2 ENH: example plot_label_activation_from_stc
new b7ac494 Fix subsetting by str name.
new 900b36e FIX: save epochs.event_id dict to fiff and read back
new 82a588b Take back edits on read_events
new 4c807f5 ENH: example plot_label_activation_from_stc.py
new c17c197 FIX: example description formatting
new d91feee FIX: example description formatting
new fa10d1c FIX: use pylab instead of pyplot
new 424705b Merge pull request #239 from Eric89GXL/event-fix-fix
new c720604 FIX: adding tests + fixing missing FIFFB tag
new 5d330f4 FIX + CLEANUP: test now works -- serializing event dicts successful.
new 9ad5dc6 Merge pull request #243 from dengemann/fix_ev_id
new 006b504 ENH + CLEANUP: adding further test, taking back exception.
new 6cc37b9 Merge pull request #222 from dengemann/ica_ncov_except
new 171e3d6 use Agg backend in test_viz
new 8696534 API: removing use of MNE_ROOT in morphing code (useful to run tests on server without installing mne)
new 16252fc RENAME: SourceEstimate.label_stc() -> in_label
new 329a3cc Merge pull request #242 from christianmbrodbeck/cmb-label-example
new e73a1bb ENH : cleanup memmap file for Raw when del
new 592b16d ENH : use tempdir in test_raw.py
new bcde879 ENH : use tempdir in tests to avoid cluttering the repo with tmp files
new 8373014 trailing space
new 6da16f7 simpler raw.__del__ for memmap
new 2279a77 FIX: icos.fif.gz missing in setup.py
new fae93ad fix warning in raw.__del__
new 1b16106 added option for coordinate descent
new 3fc0024 added CD to test_inverse
new cfe4628 added CD to test_inverse
new 4fd7063 API : using prox and cd and add auto mode
new f5edc46 addressing @joewalter's comments
new b860d33 init is only X and not , active_set
new e64ae83 avoid full matrix of zeros in _solver functions
new c733fc4 cosmit
new 99bcf7c update what's new
new eb22b38 Merge pull request #247 from agramfort/clean_tests
new 5bebb9c removing eisen test
new 0d39c16 Merge pull request #245 from agramfort/rm_mne_root
new 8e332b9 FIX: cleanup tic toc cd vs prox
new 68a1f56 add symlink for sample data used in doc build
new d2d3f63 FIX : add -f in ln in makefile in case file exists
new 76d1866 ENH: doc. hyperlinks for more packages
new 4ffd46d Merge pull request #250 from mluessi/doc_example_wikify_v2
new 6b09bee useless pl.figure in exampl
new 0938dd8 ENH: Adding IIR filtering
new 0e4a98c FIX: Gramforting the API
new 2623fad FIX: Missed one
new 6754689 FIX: String checking
new daa8a90 ENH: Adding more IIR options, speeding up coeff calc
new 5e096c8 FIX: Fixing broken nosetests, adding SSP option to speed up calc
new 6d3bc49 FIX: Typo
new 40d671a ENH: Making IIR use cleaner
new 21840b7 FIX: Docstring typo
new f9d12c9 ENH: Adding filtering options to SSP
new 99fc9ba FIX: Adding tests and clarifying variables
new 8d422bd update what's new
new 12ebdf8 Intial commit.
new 5837a8b WIP: serialize ICA into fiff and restore
new 5cb4c70 FIX: improving serialization + adding fixes. Restoring now fully works
new f574866 CLEANUP -- removing absolute imports for debuggging.
new 8d1241c ENH / WIP: added tests, fixed bugs -- precision problem is left.
new 0553975 ENH: trying to write double float matrix
new 9d5e637 ENH: really write double matrix, horray!
new 108e79f ENH + FIX: adding tests, restoring ICA sessions is working
new 929a8c4 FIX + ENH: adding catcher for sklearn version + COSMITS + tempdir + doc
new 6440a5d FIX -- updating tests - the last comments refer to this version.
new ca83417 FIX tempfile/dir
new e69f6c5 COSMITS
new 3270309 ENH: updating doc
new 6174a70 ENH: more conservative test arrays should be strictly equal (OK)
new 610fbce ENH: add catcher preventing to save unfitted ica + test
new 7da00ab cosmit
new 80ec53d FIX: Backporting filtfilt
new 3c29d19 Merge pull request #256 from Eric89GXL/iir-fix
new 7efdd5a FIX: Moving fixes around
new d8e672d FIX: Adding necessary imports
new 4a4b49f FIX: Adding fix test
new 960e2a6 intermediate commit
new 9931149 Merge pull request #257 from Eric89GXL/iir-fix-fix2
new 715f88e FIX: Fixing backport (again)
new b1cd4c4 FIX: X is a list
new 487e2e9 STY: Adding comment
new e95dcb3 ENH: updating example / pandas tutorial
new cac321a CLEANUP
new 0ea9731 CLEANUP II
new 3744889 CLEANUP III
new eea38a3 Merge pull request #260 from mluessi/fix_cluster_x_list
new 573e1a3 Merge pull request #259 from Eric89GXL/iir-fix-fix-fix
new 403d0f5 ENH: COSMITS on example + adding tests + pandas exporters for raw and evoked
new 76b330f ENH: adding some more info and hints to the example, adjusting plots.
new baa57d7 COSMITS / TYPOS
new 02b7800 ENH: Allowing epochs event_id count equalization and combo
new 695f93c ENH: Adding example, cleaning a bit
new 6d0abaa FIX: Updating comments
new 0ff43f6 ENH: Breaking up advanced functions outside Epochs instance
new cff2b06 ENH: Removing args, adding return_copy
new 13d5ce6 STY: Cleaning up
new e58991f STY: Cleaning up more
new 03e24d2 FIX: Fixing example
new b1609f4 ENH: Allowing evoked.plot() to take axes argument
new fba14f6 ENH: read labels from parcellation
new b2d9e9d ENH: adding tight_layout to viz.py + updating example.
new 5fbca83 FIX: replace remaining tight layouts
new d2162b3 doc, whats_new
new 6b76cd7 ENH: Adding covarince reliability warning
new e307a32 FIX: Adding multiple uses
new 879ef2b FIX: Adding nosetest
new a7ea5a1 Merge pull request #263 from mluessi/read_annot
new 82ea82c Merge pull request #261 from Eric89GXL/cov-check
new 159c93c Merge pull request #252 from Eric89GXL/epochs-fun
new 36bf3e8 COSMITS N
new 49ca677 Merge pull request #262 from dengemann/pandas_enh
new 903296b FIX: it's fixed I would say, no swip, one figure + background color
new bfedc27 Merge pull request #266 from Eric89GXL/pop-fix
new 3ff4ae0 FIX: prevent swipe from open figures
new e237478 Merge pull request #267 from mluessi/fix_swipe_ica
new e3480e5 STY: Making nosetests run cleaner
new 103a3db STY: Ensuring no divide-by-zero
new e6e34df FIX: Comment before change
new 0ec2d22 STY: More specific warning
new 30cfc88 ENH: Speeding up / clarifying
new 832216c FIX: Typo
new b861e29 FIX: Correcting version number
new 9622665 ENH + FIX: Ica fix sklearn
new b23f5d8 FIX: Double-ensuring that we stay above zero
new 5cd9f23 Merge pull request #265 from Eric89GXL/nose-cleanup
new 679423b ENH : cleanup ICA code
new 2733918 Merge pull request #3 from agramfort/ica_fix_sklearn
new 5f401ee CLEAN UP
new a4437d9 FIX: fixing my __repr__ fix
new 265b9bf Merge pull request #271 from dengemann/ica_fix_sklearn
new b83f105 FIX: Intermediate commit
new 56fb579 FIX: Better read/write support
new edb93cb STY: Cleanup up variables
new 017ab5e FIX: Minor error
new 4f4a12b STY: Simplifying changes
new 4eb90ea FIX: Multiple fixes
new 907872f FIX: Deleting extra line
new d2e0475 Merge pull request #273 from Eric89GXL/epochs-rw-fix
new 6410772 Merge branch 'support_misc' of github.com:dengemann/mne-python into support_misc
new f4f2feb ENH + CLEANUP: misc support looks fine.
new 04203f5 FXI + CLEANUP: Fxing plot epochs images (on this branch) and adding stuff to what's new.
new 3360d49 CLEANUP:
new d723779 ENH: completing what's new.
new ad330f1 CLEANUP
new bc1ff40 CLEANUP III: no titles and not aldo
new 0dd54f3 CLEAMUP IV: units
new 1d42511 Merge pull request #221 from dengemann/support_misc
new 6180279 DOC/typo
new 26046e0 FIX: Fixing broken tests for time_as_index
new bd7dd98 Cosmit
new b3354c2 DOC/whats_new
new 78b23a0 STY: doc keyword : type fix + pep8 + missing doc
new 0d3d4f5 Merge pull request #281 from christianmbrodbeck/typos
new 5e766cd Merge pull request #280 from Eric89GXL/raw-times-fix
new 7af3685 ENH : add plot_source_estimates and SourceEstimates.plot + deprecating plot_source_estimate
new b6fdb79 update what's new
new f7cc7fe addressing comments on PR
new f41a6b0 missing period
new ba68793 FIX : docstring mess with time_label
new 07cd8c0 Merge pull request #276 from agramfort/plot_stc
new 11249fd Merge pull request #282 from dengemann/sty_0.5
new 1f1a334 ENH: use stc.plot instead of bars
new 0a7abbb Merge pull request #284 from mluessi/pysurfer_viz_srcon
new f44d530 WIP: extract label ts, source space circular graph
new 7939b03 plot_con_circular, label colors, tests
new 224924f save fig, colorbar pos
new 0c8c21f fix text align, pca_flip
new 8082943 use s[0] in pca_flip
new 63322cd fix indent
new 5c7cd8b update whats_new
new df38914 Merge pull request #272 from mluessi/extract_label_ts
new f660d07 ENH: Deleting temp dirs during tests
new 608790c STY: Minor fixes
new 686cb20 Merge pull request #289 from Eric89GXL/temp-class
new e1e3ad1 FIX : fix PCA mode and show case new label time courses modes in examples
new 5e72efe FIX : use standard label
new 414e926 remove pca scaling
new afbc379 FIX: label pos in meters
new 61ca0fc ENH: Adding better plotting for clusters, colormap
new 16a57e1 FIX: Docstring
new 1c1e926 ENH: Adding example
new 54c5a29 ENH: Fixing example
new 4d374ac FIX: Minor fixes
new d8b2c0a FIX: Fixing label
new 92ac1e5 FIX: Cleanup variables
new f562bbe FIX: Clarifying
new 04c269a scale pca_flip with power
new 04f4109 Merge pull request #283 from Eric89GXL/cluster-plot
new bea162b ENH: Revamping contrib doc
new a6da108 ENH: Adding more doc
new a339b29 FIX: Fixing refs
new 94cea8d Merge pull request #4 from mluessi/mean_label
new 762dbd2 Merge pull request #290 from agramfort/mean_label
new 2945f74 Merge pull request #291 from mluessi/fix_label_pos_unit
new b797ea9 FIX: Minor clarification
new 49b3763 Merge pull request #287 from Eric89GXL/contrib-doc
new 6f7ac9c FIX: Addressing numpy non-integer warnings
new 1eaa08f Merge pull request #293 from Eric89GXL/resample-fix
new f72cec0 FIX: warrant compatibility of pandas exporter / example
new 59293af FIX: fixing my edit on utils.py
new 53f3d01 FIX: re-adding circle plot
new efb2dd2 Merge pull request #296 from mluessi/fix_extract_label_ts
new 1d4999e Merge pull request #295 from dengemann/fix_pandas_example
new 394331a FIX: fixing sloppy slip.
new 4677b2a Merge pull request #297 from dengemann/fix_pandas_example
new 9e702e5 ENH: Stronger linking to homepage
new 30145ee FIX: Backward-compatible contrib
new 2de562c Merge pull request #298 from Eric89GXL/readme-edits
new f5e76c9 ENH: Adding str access to evoked I/O
new b0f27c5 FIX+ENH: Access multiple types, plus fix data-mod bug
new 3d69e78 FIX: Dealing with no setno appropriately
new 861a355 FIX: Minor bugs
new 1ac065a FIX: Fewer testing warnings
new f9c2559 FIX: Minor error
new 44ce59f FIX: Use basestring class instead of str
new 0e9a4ef FIX: Replacing other str with basestr
new a0c6ddf STY: Cleaning up checking
new 387dc92 FIX: Clarifying warning
new fea6cb8 ENH: Improving examples
new f4cd144 FIX: Shorter desc_prefix for epochs proj
new b22f753 FIX: Minor error
new ae082ec STY: One-lining
new fa0cd33 STY: Removing property, setting instead
new 561f79f Merge pull request #299 from Eric89GXL/evoked-access
new 31c9a85 FIX: PySurfer SUBJECTS_DIR
new 8b36cfe FIX: error
new 8d1b379 Merge pull request #300 from Eric89GXL/nose-warns
new d09cd22 FIX: paranthetical error
new 339c74e Merge remote-tracking branch 'upstream/master' into tb-FIX-proj
new 8503b4e FIX: ifx ica warnigns
new 4d7c29a Merge pull request #307 from dengemann/fix_ica_warnings_
new 86820e3 Merge pull request #306 from t3on/tb-FIX-proj
new 274a8ec SUBJECTS_DIR doc note
new 484815c FIX: fixing my own ica warnings fix
new c659e9c Merge pull request #308 from dengemann/fix_fix_ica_warning
new d48e969 Merge pull request #303 from mluessi/fix_pysurf_subjdir
new eb96f49 FIX: mne save Raw
new 0ed3af7 FIX: read_meas_info()
new a010f5e ENH: test raw io
new 083b96c cleanup
new efe5d4b TEST: during raw io tests, check tranformation 'from' and 'to'
new a34aee5 FIX: write_meas_info(), test_io_raw()
new cb56e7e ENH : tf mixed norm estimates (TF-MxNE)
new 5aa5cfc update whatsnew.rst
new c51cc74 ENH : make alpha_space be the same in MxNE and TF-MxNE using proper TF norm
new 354f8a7 ENH : add TF-MxNE example of visual condition
new 6bc7db3 cleanup + fix test
new d875ce2 ENH : improvements suggested by @joewalter
new 8ad2af5 MISC : clarify test doctring
new 53fb020 MISC: order statements in prox_l21
new 501bdab wip
new 6d873e3 fix TF-MxNE
new 489557f Use subjects_dir in example
new 871d688 Merge pull request #311 from mluessi/fix_example_subjects_dir
new 908de5e ENH: fixed size thumbnails, doc fix
new 5749691 ENH: use google analytics for website
new d611589 Merge pull request #314 from mluessi/google_analytics
new cca7b03 ENH: making ica memorize sources to exclude
new b2380a0 ENH: improving test
new 55e061b ENH: improving doc for new feature + adding to __repr__
new 6bc4c56 Merge pull request #313 from mluessi/doc_fixed_thumbnails
new a478a33 COSMITS.
new 605ac4d ENH: adding tests for exclude indices merging
new 6ad4984 ENH: testing dispatch of exclude to raw.info['bads'] on ica.export_sources
new da00781 ENH: completing / updating the python tutorial
new 897dde8 Merge pull request #318 from dengemann/ica_bads
new 2df200a API: rename export method 'export_sources' to 'sources_as_raw'
new 7999530 FIX: Importing PIL / Image
new 0424819 Merge pull request #323 from Eric89GXL/doc-fix
new b375352 Merge pull request #322 from dengemann/ica_as_raw
new 22cf7a7 COSMITS + FIXES
new c22cb87 FIX: doctest
new 4c2903c FIX + COSMIT
new 0fbdf97 ENH : addressing comments + cleanup
new 40c5759 misc
new 36b9f73 FIX : incomplete renaming of ICA.sources_as_raw
new d261cfd Merge pull request #321 from dengemann/python-tutorial-0.5
new ec38b1f Raw.__repr__
new 046127c ENH: __repr__
new 7798b46 DOC: update __repr__ in python_tutorial.rst
new 3342947 Merge pull request #320 from christianmbrodbeck/__repr__
new ba78b95 Merge pull request #79 from agramfort/tf_mxne
new 1b29b93 API + ENH: more consistent attr/ param names, memorize all attrs
new 7c41ad1 COSMITS: remove duplicate doc
new 3a39678 DOC: restructure reference section
new 22811bf DOC: reference structure
new f0ad538 DOC: reference structure
new 8056d7d DOC: reference structure description
new 41c9af8 DOC: reference structure
new b0bcfd9 DOC reference
new e997800 STY: Getting rid of warning on test
new 458463a COSMITS II
new 2e423bf DOC: reference structure
new 723fa26 DOC: reference structure
new b1dbfee DOC: reference structure
new 6dfd8e7 ENH?:
new 122fc2d Merge pull request #328 from Eric89GXL/nose-clean-mxne
new 1fac7b7 COSMITS III
new 2e61ab7 Merge pull request #2 from dengemann/DOC
new 30a5a0c DOC: reference fix & consistency
new 5fcbab2 DOC: reference
new bb0a38e DOC: reference
new 7196322 ENH: next iteration - reflecting last discussion on #326
new b86a3f4 FIX + ENH + COSMITS
new 81e6400 COSMITS IV
new cd4b902 DOC: module docstrings
new d88d273 Merge pull request #326 from dengemann/ica_api_0.5
new 8a72e23 update mailmap
new ae9dc46 Merge pull request #324 from christianmbrodbeck/DOC
new 0ef67a9 COSMIT: for the DOC
new be7d17d Merge pull request #329 from dengemann/ica_api_0.5
new 3c0f30f ENH: adding credits for ica panel plot
new 98dc999 ENH + FIX: example doc string did not update in last PR
new 7e0d2a8 FIX: another missing update
new d6912d5 FIX: stupid index bug in raw + evoked pandas exporters
new 068c598 ENH:
new cd162e4 update for 0.5 release
new b188d5d ENH: more copy methods, include times
new 718d1a6 adding commit log for 0.5
new 9b57971 Merge pull request #331 from dengemann/df_tests
new 980115b ENH + CLEANUP
new d474ff3 Merge pull request #332 from dengemann/df_tests
new 8088757 updating manifest.in
new be1d9a4 Merge branch 'master' of github.com:mne-tools/mne-python
new 5008828 new fix on manifest.in
new 518549b M. Luessi website link
new d3b8d17 FIX: Correct URL for contributing
new 5c90647 FIX : removing test data from source distribution as Pypi does not accept too big packages
new 222d184 bump release number
new d35869f update what's new
new f444b7b FIX: found nasty hidden 'feature' making read_ica fail if ica.exclude == []
new ed3f673 ENH: Addressing #334 + @agramfort 's suggestion list(exclude)
new 7badccd COSMIT
new 221cda6 ENH: Addressing problem from #335
new 9a2e0ce COSMITS
new 5b130cc Merge pull request #335 from dengemann/fix_ica_exclude
new 1e0bc64 FIX: move cluster-level con. fun in ref
new 852409a Merge pull request #339 from mluessi/fix_05_ref_cluster
new cb1f2c2 cleanup
new 407fe34 ENH: Epochs
new 8446749 FIX: reordering in topo imshow
new 5cc3c99 Merge pull request #346 from dengemann/fix_erf_topo
new 15e640c FIX: reject time window
new 697e831 TST : improve testing of reject_tmin / tmax
new 70e1bf7 Merge branch 'master' of github.com:mne-tools/mne-python
new d41365b ENH: Better error handling
new 934af78 ENH: Better error for plot_evoked
new 4f01b29 FIX: correct logic
new db8eeb2 Merge pull request #345 from Eric89GXL/plot-catch
new 085bd06 ENH: Improving sample dataset tracking
new 7f5852b FIX: Fixing no-directory and no-var bugs
new 6b13d1e FIX: Fixing sample data path logic
new fe8c0d3 FIX: Removing relative paths in examples
new 02b5ff8 FIX: Adding tests for config
new 80c8651 ENH: Adding download status
new 2ec0a05 ENH: Using JSON
new e9f6d7d FIX: Throw KeyError
new e4e6520 ENH+FIX: Adding MEGSIM support, fixing minor testing bug
new 19948aa FIX: Minor fixes
new 9155dc8 ENH: More usable MEGSIM functionality
new c08dead ENH: Better docs
new 1fee81d FIX: Correct path in docstring
new 847ea6d ENH: Unzipping automatically
new 2d3b568 misc
new 5eab73c Merge pull request #5 from agramfort/data-paths
new c969359 ENH: Better distutils handling
new 120ebdc STY: Pep8
new 7e0da89 Merge pull request #341 from Eric89GXL/data-paths
new 2b73fd3 FIX: No prompting for dataset download
new c21037b Merge pull request #351 from Eric89GXL/test-works
new ed34e01 WIP FIX: Moving toward better windows support
new 3d51d44 STY: Adding better comment
new 076550d FIX: Fixing logging tests
new ba68e66 FIX: Making tests run better
new 5c563ff FIX: Fixing testing error, improving doc
new 25b007a FIX: Improving test compatibility
new a8f1eb1 FIX: Better testing support
new 320a2d6 STY: Cleaning up tests
new 680e136 ENH: Adding test for read_big
new 9967f0e Merge pull request #342 from Eric89GXL/win-fixes
new 5d03404 ENH: Adding epochs and evoked detrending
new d07f2b2 ENH: Adding detrend to example
new 1cf9440 ENH: Adding picks param
new 1af0bd0 Merge pull request #350 from Eric89GXL/detrend
new c7d954d FIX: Fixing doctest quirk
new 9da0e70 Merge pull request #353 from Eric89GXL/doctest-fix
new cf7c6f2 ENH: Cleaner utils and testing
new 5b64c39 ENH WIP: Adding notch filtering
new 6c189e3 FIX: Uncommenting useful lines
new 274c7f9 ENH: Adding F-test for significant sinusoidal components
new 0d3ffaf FIX: Unused parameter
new 7833f2d ENH: Adding example, better performance
new bfaaacb FIX: Fixing typos
new 19f6c9c Merge pull request #354 from Eric89GXL/restore-changes
new fe639dc FIX: Speeding up dpss, minor fixes
new b7a2f2d FIX: Fixing band-stop check
new 898f6a0 FIX: Fix info
new 7f29f52 FIX: Only print if verbose
new df66787 ENH: More informative error messages
new cc8cc4c FIX: Minor adjustment
new de2990e FIX: Only need to check if str
new 93d9cdb FIX: Minor change
new c5b3f1a FIX: Making changes simpler
new de01ab8 PEP8
new 0f40814 Merge pull request #358 from Eric89GXL/print-fix
new bcf4708 FIX: Non-global dpss_n_times_max
new d52ea59 Merge pull request #316 from Eric89GXL/notching
new 5b6dbd2 Merge pull request #357 from Eric89GXL/evoked-errmsg
new f31cfcf ENH: define higher order events
new a9897d2 COSMITS + ENH: adding test, fixing doc string
new 4f05815 ENH: fixing integer issue + improving example
new 7013397 COSMITS
new 571363a COSMITS: updating doc text.
new 518c9ea ENH + COSMITS: addressing points from review, improving example
new 6b2086b COSMITS: units
new 5e85aaa cosmit
new eefd730 COSMITS ...
new bce52e8 Update mne/event.py
new 8f7282c Update mne/event.py
new 9d72a7d Merge branch 'master' of https://github.com/t3on/mne-python
new b2dd58f DOC fix
new 178c869 OPT: use proper constructor/attributes
new 8560397 FIX : for empty tag
new c1544bd DOC: typo
new d392cf2 Merge pull request #371 from christianmbrodbeck/minor
new 715b67d ENH: Adding label morphing
new 6476d59 STY: Better commenting
new 3b73c75 ENH: Allowing single array passing
new 0215c5c FIX: Add whats new
new 326b750 Merge pull request #363 from Eric89GXL/label-morph2
new 318e6b3 FIX: Fixing label regression
new 00d3637 Merge pull request #372 from Eric89GXL/label-fix
new 650c69b FIX: typo
new b68c8ff ENH: adding function run_ica for automated artifact removal workflow.
new d63bbf3 ENH: Adding tests, fixes, support for multiple EOG channels
new a1ed7e5 ENH: updating reference / what's new
new 1e24d33 COSMITS
new 049cf39 COSMITS
new 88ef720 COSMITS
new e7c9203 Merge pull request #370 from dengemann/run_ica
new 64a7e9a FIX: fix doc parsing error
new bb69cc4 Merge pull request #374 from dengemann/run_ica
new 83f831b FIX: Ignore bad channels when dropping epochs
new 02bbef2 FIX: Omit bad channels by default in epochs
new 65a9e73 ENH: Exclude bads by default
new 4d572fa FIX: Using deprecation
new b3edef4 FIX: Updating whats new
new fbd70c3 FIX: Fix str comparison
new d74c5b1 FIX: fixing API / error handling in plot_evoked
new ded254c Merge pull request #376 from dengemann/fix_plot_evoked
new 66c5029 FIX: Typos / inconsistencies
new c651e2e Merge pull request #367 from Eric89GXL/epochs-bads
new dc2d6d2 ADD: constant for KIT system
new 7a04356 Merge pull request #378 from t3on/tb-kit_constant
new 0f160b1 WIP: add tests and with statement for Raw objects
new 0cc829a COSMITS: removing debug lines
new fe70108 Merge pull request #387 from dengemann/with_statement
new 70d86f2 FIX: fix ylim kwarg
new f129b0d ENH: docstring
new 5da5de1 Merge pull request #391 from dengemann/fix_plot_evoked_ylim
new cebd823 FIX: Dealing with tag=None in bad channels
new 3e37b65 Merge pull request #396 from Eric89GXL/raw-read-fix
new a2e3cbb FIX: Adding viz tests
new e425909 ENH: Adding test
new 162a876 Merge pull request #397 from Eric89GXL/viz-tests
new b3e0795 ENH: Adding rank computing function
new c920344 FIX: Adding to ref
new b8fb0ef FIX: Addressing comments
new ff333e6 STY: Better variable naming
new d82f66f WIP: Moving toward improving match
new b1d533a FIX: Making inverse calculation more consistent
new 86cbc3d FIX: Dont want to set log level in test
new d7d21d4 FIX: Improving test coverage and old bug
new 9dbca55 STY: Better info
new 04b8fc9 STY: Fixing colons
new f2301a5 FIX: Allow re-calling of .as_diag()
new 18be9e1 STY: PEP8 and pyflakes
new 424680f FIX: Making fixed orientation consistent
new 05b8ba3 FIX: Better inverse matching
new 3ca3f40 FIX: Fixing regression in mixed_norm
new 279c68c FIX: Minor fixes
new 749a83d FIX: Fixed versus loose orientation confirmation
new de8c37e ENH: Extra check
new 7a7f1e0 API: Adding limit_depth_chs option
new 96dfe44 FIX: Updating whats new
new 1514b8f API : pass info dict (gain_info) to depth computation (cleaner)
new 5eee891 API : rename force_fixed to fixed in make_inverse_operator
new c142a5f FIX : fix in _prepare_forward pick_info + cleanup
new eeb9d30 FIX: Minor fixes from rebasing
new 31a1e1f FIX: Making old and new options better
new e76ceb6 FIX : MxNE examples with new depth bias correction
new b8d3897 DOC: API change in what's new
new c5642fa ENH: Paralell filtering in filtering functions
new 056e0ff ENH: Speeding up filtering and adding CUDA support
new 5a58ec7 FIX: Putting tests back
new 6a453e6 FIX: Minor fixes
new bb67eb8 ENH: Speeding up a little bit
new 8f2b667 STY: Fixing docstrings
new 293df80 FIX: Minor fixes, speeding up CUDA tiny bit
new 7a94b95 ENH: Less memory for apply_function
new 1df5c33 STY: Making CUDA API cleaner
new db8928f STY: Refactoring CUDA to own module
new b842e14 STY: Better commenting
new 1290072 STY: Cleaning up code
new 9a5f729 STY: Cleaning up organization
new f29ffe9 STY: Cleaning up
new 4a313a9 API: Changing CUDA load priorities
new 835a333 STY: Better messaging for CUDA
new f0afbc4 FIX: Minor fix
new a21b7fa FIX: Minor fixes
new 405017e FIX: Import exception fix
new f71282b ENH: Allowing CUDA support for float32 GPUs
new 7a3f061 FIX: Fixing tests for 32-bit
new f6b98ff STY: Improving docstring
new ec5b3d4 FIX: Dont allow 32-bit FFTs
new 6f64d2d FIX: Dont allow 32-bit FFTs
new 0f33c13 ENH: Tiny speedup
new 60ed2a2 ENH: Adding CUDA resampling
new 7f3a34f STY: Minor cosmits
new c1d7def FIX: Adding scipy.signal.resample equiv test, minor cosmits
new f905f81 FIX : astype with older numpy
new a7d012a FIX: Fixing docstring
new 146e65f DOC: Updating whats new, gitting started, readme
new 71154d0 Merge pull request #393 from Eric89GXL/faster-filter3
new 621f0f8 FIX: Dont doctest CUDA options
new 6541afd FIX: Minor fix for resampling
new fda3629 FIX: Dont print unnecessarily
new 549f9a9 Merge pull request #399 from Eric89GXL/resamp-fix
new fcded2f ENH: more liberal ylim handling
new ee635d3 Merge pull request #400 from dengemann/fix_plot_evoked_ylim
new abb5232 FIX: Leaving all channels in cov
new f6750c1 FIX: Keep all channels in cov after regularization
new 4513517 FIX: bug in FFT cost calculation
new 39160ca Merge pull request #403 from Eric89GXL/cov-fixes
new ef86284 WIP: optimal fft_length selection
new 41f39e0 heuristic to prevent long FFTs
new 6be2456 fix: max_fft too small
new 1c57d44 Merge pull request #405 from mluessi/faster_filter4
new 1ee3067 ENH: Only read necessary portions of Raw (intermediate)
new 638e7b2 FIX: Fixing reading, adding test
new c936f77 FIX: Cleanup
new a8de394 FIX: Use complex128
new 63c3ba5 ENH: improved doc-link resolver
new 0ec7e23 STY: Adding better doc
new 8714483 ENH: Speeding up
new 4ad9c89 ENH: Speeding up epoching
new e878fd3 FIX: Minor fix
new 16ab3af ENH: Minor change
new 08a1afd Merge pull request #412 from mluessi/doc_links_v2
new 927d03a WIP: ica notebook
new 9396767 COSMITS
new 6f7f345 FIX: passing parameters in run_ica
new 6ce47aa ENH: removing notebook
new d329364 COSMITS: string formatting instead of repr
new 7bf0370 FIX: exclude bads from evoked plot
new 0e9f487 Merge pull request #409 from dengemann/ica_notebook
new fe4710a gitignore: add "coverage"
new fc808f3 FIX: make_inverse_operator checks
new 9820188 ENH: parameters for make_inverse_operator
new 859b121 ENH: make_inverse_operator
new 8490e4d TEST: add test_make_inverse_operator_free()
new 4fe0886 RF: compute_orient_prior; pep8
new 633f306 DOC/error messages
new c6d3440 TEST: FIX test docstring
new 2aa37bb FIX: Lower memory usage
new be70ee6 FIX: Filter all channels in raw
new e9a3ac3 ENH: Double-check memory allocation
new 84cb0da Merge pull request #414 from Eric89GXL/filter-all
new 6d401fe exclude option, black for bads
new 572125f FIX: Removing unnecessary check
new bc39ed6 Merge pull request #410 from Eric89GXL/raw-read
new e7e6db9 FIX : fix L21 MxNE due to make_inverse_operator change
new 98a72db Merge pull request #416 from agramfort/fix_mxne_example
new 4b09c28 bads in red others black
new 7defdaf use iter
new e686ec9 avoid warning
new 4670b39 typo whats new
new 7570f0d ENH: Adding raw.save() format options and overwrite protection
new 4ff30f2 FIX: Minor fix
new 166d494 STY: Refactoring file checking for future use
new 4ce7826 Consider negative differences in events channel as events
new cb6ff20 Add test
new 2ad5438 STY: Harsher warning
new 996d80b Address comments
new fb746e5 dont exclude bads in example
new e43ae69 Merge pull request #413 from mluessi/fix_plot_evoked_bads
new f1fbe4e plot both hemis in plot_stc
new a0d52ce show both hemis in example
new 9e9331e docstring, whats new
new 1ba3709 Merge pull request #418 from mluessi/plot_stc_both
new 0ec5427 Add detect, consecutive, and min_duration parameters to find_events()
new 2350c8c Merge pull request #419 from Eric89GXL/save-types
new 67817c6 STY: Updating whats new based on raw-reading PR
new 89cf184 Use min_duration in seconds, improve docs
new c1b1467 Add consecutive='increasing' to mimic old behavior
new 1a88968 Fix long line
new d2b47a5 Give expected results for detect='offset', consecutive='increasing'
new 4b1ea7d Don't doctest since data is not available, conform to pep8
new c7bd4fa Merge pull request #420 from simonster/find_events
new c2f7de6 Update whats new for find_events
new 723f12b FIX+ENH: Making calibration consistent, adding orig_format to raw
new 1c8d577 ENH: Allow different default stim_channel
new 4f25a30 STY: Use MNE_STIM_CHANNEL as 0th channel
new ce5d7c6 API: Move *_config() functions to mne namespace, add whats new
new 3417157 Merge pull request #425 from Eric89GXL/sti-channel
new d737176 Merge pull request #424 from Eric89GXL/raw-info
new bce5a3f FIX: Allow bads mismatch with logger info
new 68b1d52 ENH: adding a test for channels / bads mismatch
new 413f9db Merge pull request #10 from dengemann/inv-bads
new ec72094 FIX: Addressing raw reading regression
new d8e33a0 COSMITS: less implicit test for bads
new 526f4d9 Merge pull request #11 from dengemann/inv-bads
new 79f3a12 Merge pull request #429 from Eric89GXL/raw-read-fix
new 5119ef3 ENH: Speeding up ECG projector calculation
new 3c0044e ENH: Speeding up EOG SSP calculation
new 09304a9 ENH: Automatically choose filter length
new 9746864 FIX: find_events() backwards compatibility
new e47e684 Merge pull request #430 from christianmbrodbeck/fix-find_events
new 293225e update ref to TF-MxNE paper
new 1831503 Merge pull request #426 from Eric89GXL/inv-bads
new 290b9bb WIP : Added functions to restrict forward to stc or label
new ceaf984 ENH: Add human-readable filter_length
new af5c599 ENH: Use power-of-two for human-readable filter_length
new 96ec230 Merge pull request #432 from Eric89GXL/ecg-faster
new 92b7f3b included comments from github
new e21ed5f FIX: Intermediate inverse fix
new be621f5 FIX: Fixing inverse calculations
new 3a6bbf6 FIX: Adding extra test
new 9ee1ebd change simulation of stc to have sorted vertno
new 473f833 enh: patch_inds opt
new a4004a0 Merge pull request #12 from mluessi/inv-fixes-dist
new be3588e FIX: Fixing broken tests, cleaning up
new 4df2ef4 FIX: Fixing example
new e067860 Update mne/stats/multi_comp.py
new b6bff5f pep8 fixes
new 73d3e13 added searchsorted
new 55ea630 Merge pull request #437 from Eric89GXL/inv-fixes-dist
new 38f9fc1 Merge pull request #438 from joewalter/bug_in_simulator
new 8237faf STY: Update whats new based on changes to inverses
new 61f1797 FIX: Epochs to evoked when t=0 not included
new 2838124 FIX: Changing tests based on sample update
new 3e31459 FIX: Fix evoked.first parameter
new 04586f5 FIX: Fixing API notes
new ffbc29f FIX: Adding tests
new ee9c74a FIX: Adding extra test
new 66d4b02 ENH: Adding plot_drop_log() viz function
new 920451c STY: Use Counter
new 62fe226 STY: Updating whats new
new 8c51835 Merge pull request #441 from Eric89GXL/sample-updates
new 0642462 use union of bads when merging
new 7c40e1c ENH: Better style
new d5d7ef3 Merge pull request #442 from Eric89GXL/plot-drops
new 5e0687e Merge pull request #440 from Eric89GXL/epochs-fix
new c8d15e7 Merge pull request #443 from mluessi/merge_bads
new 886a07e ENH: Add raw.estimate_rank() function
new 3e13fe0 FIX: Off-by-one error
new b67f315 FIX: Adding tests
new ea0603a ENH: Simpler calculation
new f767be8 STY: Better commenting
new 38b84cb FIX: Remove unnecessary option
new 49fa3a2 Merge pull request #444 from Eric89GXL/raw-rank
new 979a977 FIX: fixing n_jobs arg + adding exception
new 450cad9 ENH : new check_n_jobs functions and protect multiprocessing import
new 5b3d158 Merge pull request #4 from agramfort/fix_njobs_clu
new a46efc5 WIP: neater internals for run_ica + support for additional rejection nodes
new 9fde25a ENH: make save return self
new 69d67e5 ENH: adding detect_artifact method + private function
new 20c373f ENH: inplace modification + return self
new 8780d5d ENH: catching failing detection for run_ica
new ce41084 ENH: addressing discussion
new ed5be2b FIX: restoring intended behavior --
new ba18c3a ENH: Allow "cuda" if requested
new 9a5334b ENH: Allow n_jobs="cuda"
new 2a2fb32 Merge pull request #5 from Eric89GXL/fix_njobs_clu
new de0df6f FIX: once more only considering n_jobs < 0
new 3f5c11c Merge pull request #447 from dengemann/fix_njobs_clu
new 5aa3834 Merge pull request #427 from dengemann/ica_notebook
new 0ff8c71 ENH: Better error info
new 3c3c9a4 API: Move estimate_rank function out of raw
new ccec110 ENH+FIX: Making CUDA resampling more efficient, fixing DC/Nyquist error
new 0a13257 ENH: Minor speedup
new dc38fb7 ENH : avoid error in plot_time_frequency_mixed_norm_inverse.py
new 2ea71c6 Merge pull request #450 from joewalter/TF_MxNE_example
new 3a1cf7c API / ENH: improve readability, drop catch
new 7167233 Merge pull request #451 from dengemann/ica_notebook
new 363cc6f STY: Use "copy" instead of "overwrite"
new 4b00057 FIX: Missed copy arg
new 645995c Merge pull request #448 from Eric89GXL/epochs-error-info
new 0406b1a STY: Update based on rank computation
new c1a90bb small _prepare_forward clean up
new 3beef98 Merge pull request #452 from chdinh/master
new d173a43 Merge pull request #436 from joewalter/restrict_fwd
new fddce30 DOC : fix python ref
new 8503912 ENH + FIX: correct logic
new 7086305 ENH: initial commit
new e8af7af ENH: adding raw data reading
new b8acc59 ENH: read data debugged - put stuff in functions instead of classes
new 1d378d7 ENH: intermediate commit, adding bti config file
new 2720fae ENH: writing config file code
new b6d29e1 ENH: edits on conversion class
new a409bee FIX: debug read user block
new 32a472a FIX: fix constants and read_userblock
new c291387 FIX: constants and bti
new 804ee64 FIX: constants, userblock
new c37330b FIX: another round
new a417f11 FIX example usage
new b766ea4 ENH: adjusting weight table handling to C code
new acdf478 FIX: issue with channel names + bug for lowpass info
new e9579a2 FIX: channel naming
new 5883db2 ENH: final polishing
new 70452cb FIX: remove old file
new 9ec7907 cosmit
new 8a478af update what's new + cleanup python ref
new fe79157 add mne_bti2fiff.py to setup.py
new 25fa190 update manifest
new ed3d9be ENH: Adding forward solution wrappers
new b4d4b10 ENH: Add forward-writing and averaging
new c671640 STY: Cleanup
new a81696b FIX: Adding future test
new 1905bab FIX: Dont take str args
new 4b42ff3 FIX: Better comment for test
new 118244a increase tol in test forward
new 589bc2d STY: Minor fix
new 06acd08 STY: Update based on forward functions
new d4a0313 RF/ENH: find_events
new ccadced FIX Epochs: Don't exclude events where the second column != 0
new 96113b4 ENH find_events: work on Raw instead of array
new ccc164d ENH find_events: add `detect='step'` option
new c504630 ENH find_steps: add merge parameter
new b9e3415 ENH: expose find_steps()
new 968a6e0 TEST: find_steps() merge parameter
new e42174e FIX merge_events(): take into account second column
new 480c21b ENH find_events: use merge find_steps parameter for min_duration
new 7d422ea FIX: find_steps() pad_start parameter
new c7cdf87 DOC: clean up sentence fragment
new 8ca21ac FIX: find_events/find_stim_steps
new c3376bd rename `find_events()` kwarg `detect` --> `output`
new 4f9c6b2 DOC: fix whats_new newlines
new 35454ec Merge pull request #434 from christianmbrodbeck/rf-find_events
new 48bc690 TEST: test that breaks `compute_proj_raw`
new b68396d FIX: compute_proj_raw
new d6d99bb Merge pull request #453 from christianmbrodbeck/fix-proj
new d77dc85 FIX: Fix n_col typo
new bc8b181 ENH: Add show_fiff function
new 3415db7 ENH: support dict-style epochs for cov computation
new 39d7874 FIX: dizzy flu typos
new b8e175f ENH: adding tiny test
new 6df9e14 Merge pull request #457 from dengemann/epochs_cov_update
new 1f7f6b7 ENH: more pythonic unlisting
new c4045be ENH: pdb friendly names
new f79aef6 FIX: Adding tests
new 47cb7f9 ENH: Adding exclude for show_fif
new 93ece26 Merge pull request #458 from dengemann/epochs_cov_update
new 32947d4 ENH: More constants
new 485cfd7 Merge pull request #454 from Eric89GXL/show-fiff
new a2053bf ENH: add condition count to Epochs __repr__
new 4d1fdd2 ENH: more efficient count, break after 30 chars + add '...'
new 9c7555d COSMITS
new c268c63 ENH: condition names as strings
new d424b0b STY: Update show_fiff
new 4164d1a ENH: endles list at the end + newline
new e401ae0 ENH: raw string formatting
new 2d9f701 ENH: Faster morphing
new c59f91d FXI: tutorial.rst
new eea9871 Merge pull request #459 from dengemann/epochs_repr_count
new ba7acbd STY: Cleaning up
new bcd0233 STY: Cleaning up
new 41509f9 FIX: Minor fix
new 3f1a30d Merge pull request #462 from Eric89GXL/morph-speedup
new 33969d6 DOC: find_events
new 9ccdc52 Merge pull request #464 from christianmbrodbeck/doc
new 4bcc58c DOC: typos
new 3bddee3 FIX: more reasonable file name handling
new a172e2d Merge pull request #467 from dengemann/bti_fname_check
new 16d10ef FIX: addresses #468 offset problem
new 8fa7c2c COSMITS
new 27c3248 Merge pull request #469 from dengemann/bti_fname_check
new ac4f3ff ENH: keep old ref_channels names
new 752f752 ENH: drop low level reading
new 5aa3423 COSMITS
new aaf4fab FIX: restore previous naming
new 8b3e62f Merge pull request #470 from dengemann/bti_fix_read
new a77ba30 ENH : sensitivity maps computation
new ebc3396 more on sens maps
new 665d220 iter on sensitivity maps
new 0cb25cd update python ref
new eed69af FIX: Fixing compatibility
new 98bc409 STY: Alphabetical
new f9c8489 STY: Grammars
new fdbdc6a ENH: More modes
new 08eb40c FIX: Minor fix
new b5557b2 misc
new 3f9eb2b adding example of sensitivity map for ECG
new ea7ed23 update what's new
new 8f4f007 Merge pull request #476 from christianmbrodbeck/doc
new c6c603a WIP mne_kit2fiff: from KIT SQD files to fif files
new 2c3c15d ENH: add kwarg to read_raw_kit, rearrange the procedure
new 59794f5 ENH: remove redundancy, increase efficiency
new f409e9e update what's new
new f9adc75 ENH: better handle of ref channels in picks
new 4b5650c FIX: remove unintended sphinx directives
new 4cff5ca ENH: add change to other pick functions
new bb9c3d9 Merge pull request #473 from dengemann/ref_mag
new cdcad66 FIX: wrong channel typing
new c29db15 FIX: fixing first commit
new c2ac500 Merge pull request #478 from dengemann/fix_bti_resp_channel
new c967711 ENH: adding safe reject delete
new 2ff0f1f Merge pull request #479 from dengemann/ssp_reject_keys
new b697c96 FIX: filter doc
new 98b8204 Merge pull request #480 from dengemann/fix_notch_doc
new 159af73 ENH: option to raise an error when get_subjects_dir() finds nothing
new 7ca0be3 FIX: add subjects_dir parameter to do_forward_solution()
new 42e4d4b MISC/COSMITS: addresses minor doc and viz style issues
new 7797d31 ENH : add qrs thresh in options of mne_compute_proj_ecg.py
new 5221bcf Merge pull request #484 from dengemann/fix_whitened_evoked
new 3863c43 Merge pull request #477 from christianmbrodbeck/fix-test
new 0030a2a Merge pull request #485 from agramfort/qrsthr
new 99b1223 WIP: Add raw plotting
new e52f610 ENH: Allow showing events, add raw.plot()
new 998166b ENH: Projector dialog
new ef2f993 FIX: Adding test
new 9cfe6dd Merge branch 'raw-plot' of https://github.com/Eric89GXL/mne-python into raw-plot
new 34e7aac ENH: Cleaning up layout, addressing comments, adding example
new af061b5 FIX: Minor fixes
new 88db50e STY: Updating whats_new and tutorial
new c9f6af3 Merge pull request #486 from Eric89GXL/raw-plot
new 7cdffce FIX: Better error handling
new e947b44 Merge pull request #488 from Eric89GXL/inv-doublecheck
new 92eabc3 ENH: Adding STC expansion
new 5cea1f5 FIX : missing transforms module in setup.py
new a74bc34 Merge branch 'master' of github.com:mne-tools/mne-python
new 1ac7dc3 FIX: transformation
new 075a858 ENH: allow for different file formats
new db24647 FIX: rotation
new 5162a58 FIX: correct docstring
new 78b7d25 ENH: use scipy.linalg wholly
new 15bd6e2 Merge pull request #489 from Eric89GXL/stc-add
new e24d916 Merge pull request #492 from t3on/tb-hs-FIX
new 22ab801 Merge branch 'master' of https://github.com/mne-tools/mne-python into raw-plot
new a4c1ec1 FIX/ENH: pick response channel + add ref_meg to raw.plot
new e035494 FIX: add the missing types to inds
new 2536e67 COSMITS
new 47b94d5 Merge pull request #493 from dengemann/fix-raw-plot
new 2167ee0 FIX: addresses #494
new b46f05f FIX: silly slip
new a63efce Merge pull request #495 from dengemann/fix-smooth
new e73ad6b ENH: plot_raw resp and ref_meg entries to color & scaling in dict
new 0588016 Merge pull request #496 from dengemann/raw-plot-add-keys
new c928d4a ENH: ... missing scaling + color dicts in raw.plot
new c593bcc Merge pull request #497 from dengemann/raw-plot-add-keys
new a484442 ENH: Pass config_opts through to pysurfer
new deef537 wip: delayed stc
new 47dd467 delayed stc modify
new bd102ec rm kernel fun
new 907de36 unmodify example
new 45330a8 cleanup, tests
new 408928a revert example
new 2d6907a doc, cleanup
new 03dd9b9 STY: Clearer description
new fa43391 Merge pull request #498 from Eric89GXL/stc-opts
new 9c9aa08 rebase, fix stc.expand
new faaa730 Merge pull request #481 from mluessi/delayed_stc
new d9e480c ENH: make read_raw_segment into a method called read_segment
new 65bb014 REN: read_raw_segment to read_segment
new 0d25d52 ENH: make read_raw_segment into a method called read_segment
new da85332 update whats new
new ff26a07 ENH: make read_segment, read_segment_times PRIV
new 0cda110 FIX: Keep users from making mistakes
new e667755 ENH: make read_segment PRIV
new 96a81aa Merge pull request #501 from Eric89GXL/forward-err
new 82e1409 FIX: indexing for append method
new 79a89cd Merge pull request #499 from t3on/tb-raw
new c1f1352 ADD: subclass method read_segment to read segments of sqd files
new 24cc6f7 WIP: read_segment
new 72aabe8 ENH: _read_segment method for preload=False
new 1fb5181 ENH : first example of decoding
new aef0a2f DOC : improve comments in decoding example
new 68f77f7 update what's new
new 1bc54e5 FIX : file rights on mne_kit2fiff.py
new 1a05c40 ENH : new example that shows connectivity across the spectrum between 4 labels
new 3b3d5a0 ENH: new test for read_segment method
new ed97ab2 ENH: gives optionality to trigger specification, ADD: endianness
new 21af4ac ENH: new _read_events method
new 181efb0 ENH: sel kwarg
new 279a16f ENH: add readability to sqd parameters attribute
new c0b8f17 ENH: simplified parameters
new 4a6e917 ENH: separate parameters from constants, employ standard dict
new f663d82 ENH: make get_sqd_params a module level function, address KIT issue
new 9e33fcb FIX : ShuffleSplit for old sklearn
new e87032c dont use bands
new b7dd915 Merge pull request #5 from mluessi/connectivity_spectrum_example
new d9dedb9 Merge pull request #504 from agramfort/connectivity_spectrum_example
new bda09af ENH: address all comments
new 03b9474 FIX: indexes the proper channels for remove the gain
new 2a84aab ENH: increase read_stim_ch execution speed
new b0e1a9f ENH: spelling, fix typos
new 1e787ae ENH: standardize dtype
new 06e1ff4 ENH: remove redundancy, cosmetics, update files with an event
new 4437a9e ENH: add errors
new d41f65b ENH: add sel argument, simplified read_stim_ch
new ea562ce ENH: remove unused argument
new 3149cf0 Merge pull request #503 from t3on/tb-read_seg
new 2759aa9 ENH : add support for 2 samples spatio_temporal clustering
new aa0edb8 ENH : uniform API of permutation_cluster_test and permutation_cluster_1samp_test adding step down etc. to permutation_cluster_test
new f766b08 ENH : refactor to merge permutation_cluster_1_samp_test and permutation_cluster_test
new 6c31a6d ENH : adding default thresh in permutation_cluster_test
new 9527284 extra space
new fa8692d Merge pull request #506 from agramfort/spatio_temporal_cluster_2samp
new 454ca05 update what's new
new da293be FIX : import for old version of scipy
new 173ea60 ENH : adding example showing MEGSIM data
new 70e7d4e typo
new a732c08 Merge pull request #507 from agramfort/megsim_example
new bc46e53 ENH: Plotting enhancements
new 8da7510 FIX: Adding test for label.smooth
new 730ef06 Merge pull request #508 from Eric89GXL/stc-trans-opt
new fa90e66 FIX: Several minor fixes
new 1e78847 FIX: Backward compat for fwd read
new bef842b ENH: More informative error
new dfcd4b8 FIX: Few vertices in label
new f4060b0 FIX: Fix docstring
new ae70b75 Merge pull request #509 from Eric89GXL/epochs-first-fix
new d2aa642 FIX?
new c5e0918 Merge pull request #510 from dengemann/fix_epo_baseline_arg
new da303d3 FIX : fix lcmv pinv cond
new 65ec049 FIX: is_surface() for volume source spaces
new 2bd91fc ENH: More tests
new 565d362 STY: Cleanup
new 8a9d714 ENH: Combining tests
new 474c854 ENH: -vol.w support
new 7d955f2 ENH: More complete test
new 559b0b0 Merge pull request #511 from Eric89GXL/vol-fix
new bc28c18 ENH+FIX: Read extra meas info, fix raw concat error
new 96f5348 FIX: Minor test fix
new d746a1c ENH: Allowing overwriting of raw files
new 73390af ENH: Adding viz.compare_fiff()
new 91eacb4 STY: Cleaner
new 5c1e10f typo
new a18739e fix manifest
new 1654121 FIX: Allow bads exclusion at proj stage
new e61dda5 STY: Better description
new b87e97e STY: Typo
new 7fecb7b FIX: Adding test
new d47e94c FIX: Several testing fixes
new 32e7a3d Merge pull request #514 from Eric89GXL/make_proj_fx
new e8c3fde ENH: Adding subject parameter to SourceEstimate and Label^C
new 3500321 ENH: More consistent use
new d7b06b0 FIX: Minor fix
new 36cacb2 FIX: Better comment
new 9a975cd FIX: Minor fixes
new 9f1c73b FIX: Several fixes
new 50132bf STY: Fixes
new 80e16d3 STY: Cleaner example
new 67fa22c ENH: Faster fsaverage grade 5 vertex use
new 613fecf Merge pull request #512 from Eric89GXL/stc-subj
new 97317ef ENH: pickle support for Label objects
new ff6e0a0 fix doc snr for mne_compute_raw_inverse
new 661f502 FIX: Fix megsim
new 40d2d21 Merge pull request #520 from Eric89GXL/megsim-fix
new 3cba0dd ENH: Allow no EEG ave ref in epochs
new f4108ec Merge pull request #521 from Eric89GXL/epochs-avg-eeg
new a60516b ENH : adding example using single trial megsim data
new 85bbdab misc
new 95de23c FIX: Fix vertex_to_mni calculation
new 5b0762c Merge pull request #522 from agramfort/meg_single_trial_example
new bb4fcc6 Merge pull request #517 from christianmbrodbeck/pickle
new 8cf4ac0 FIX: Test only if Freesurfer installed
new 87d5c0a Merge pull request #524 from Eric89GXL/v2m-fix
new 93c938a ENH: Allow use of nibabel
new cde0d3f ENH: Better options
new 7350a29 Merge pull request #526 from Eric89GXL/nibabel-xfm
new 29a201f ENH: Better vertex_to_mni test
new 13354fa ENH: Use BallTree nearest neighbor search
new cb8b159 cleanup
new 804b1d7 Merge pull request #528 from mluessi/compute_nearest_balltree
new a2ed246 FIX: Fixing transform for vertex_to_mni
new 5d8ac0a Working version which also accepts two channels as input. diffs should show ALL differences that have resulted while adding new option.
new 4743326 FIX: Counter imported from collections not from fixes
new dd46a22 Merge pull request #533 from dengemann/fix_counter
new 8d0bf32 Misc changes. Fixed docstrings and KISS for multiple channels
new 4381816 update mpl req
new d83217e ENH: minor fixes making life easier.
new 939e78f ENH: title parameter for plot raw
new 9e6e2a8 COSMITS
new d6317c2 Some Last Moment Fixes
new d96771e Fixed bad docstring
new c3ae5b5 misc in plot ica code
new a4f6fbe New option to specify EOG channel(s) by Mainak Jas
new 235c0b4 Merge pull request #534 from dengemann/minor_fixes_raw_plot
new 70cb00a Added hyperlink for name
new 0ee9eb3 Merge pull request #529 from mainakjas/master
new cc83e44 FIX: Deal with zoom in talxfm
new 140da38 WIP/ENH: apply_projection method as for Evoked
new 3ade236 COSMITS: add docstring, simplify expressions
new 2d208fa COSMITS II
new 4ceb782 ENH: adding copy method
new 0702316 FIX: pass True
new 7bbb8f6 ENHL: implement oneway handling.
new 526ef34 FIX/ENH: fixinf handling + adding proj option for read_evoked
new 3d8ce5b ENH: ... actually adding the proj argument
new 58225ff ENH: set projn flag on creating aves
new 18da282 FIX: reference / copy bug
new 4f05225 ENH: addressing points from discussion + COSMITS
new b819e82 ENH: adding add_proj
new 2489061 COSMITS
new f5e1456 ENH: misc fixes + impriving the checking sequence + more readable
new 54d5e99 Add mixing
new fba4c2c ENH: Fully implemented Mixin instead of class methods.
new 0264f40 ENH: fix head + remove comments + return self
new f7dc246 ENH : more tests with ProjMixin with Evoked and Epochs (still buggy)
new 88c1420 FIX: fix projection check. addresses recent discussion
new 8da238d FIX: revert unintended change on example.
new 759e231 ENH: support lazy SSP via double epoch reading
new 872e241 COSMITS + improve ProjMixin doc string
new aa59650 ENH: ProjMixin doc, expose new chaining feature.
new fd0320a COSMITS
new 1075765 COSMITS II --- ProjMixin add missing Returns doc
new 33a83ba ENH + FIX: improving apply_projector
new d64c074 ENH: insert commit from Alex's PR
new 16095d6 FIX c'n'p error
new 0ce71b0 FIX add_eeg_ref in epochs proj mixin test
new 5b00818 CLEANUP
new 5df4d33 FIX tests
new 75335a1 FIX doc string
new 6a4fbab ENH: add new example
new 9fd0ec2 First success -- delayed SSP in sight.
new f009a21 ENH: cleanup example
new 225003c FIX utils logging test
new 11793d1 ENH: - API: rename apply_projector -> apply_proj - ENH: delayed SSP for preloaded epochs - ENH: more efficent reloading using self._tmp_epoch + private method - ENH: nicer, less cluttered print - FIX: utils test
new f97f111 FIXES
new 1ca2b6b ENH: remove old API remainders
new 478de8e ENH: compare different ways to apply proj
new 0bd42f5 CLEANUP
new 96c62ce FIX: doc test
new a92505a FIX: fix auto-activate EEG ref
new e22a3fc ENH: improve ProjMixin.apply_proj
new d787504 COSMITS
new 2b85c1c ENH: improve example + allow for adding single vectors
new 6d083e9 COSMITS
new 5d6dff2 ENH: improve example doc text
new 5c1ca1c ENH: fix test_proj
new c3b9297 FIX: test_epochs_proj_mixin
new 1173499 ENH: more elegant handle of delayed_ssp case using private attr
new 48144be ENH: cleaner implementation of delayed ssp wihout self._tmp_epoch
new 090f7c4 COSMITS
new 3e3dcaf ENH: drop self._preprocess
new 90206b9 COSMITS
new b7d2c53 FIX missing parentheses
new 19a7f5f MISC : wording + import order
new 20816df ENH: embed twitter in website
new 8b6bfc6 FIX : allow plotting of Raw with CHPI
new afe5876 Merge pull request #538 from agramfort/plot_raw_chpi
new ac7b1b1 ENH: remove mutables from func params + use handle
new 2ffcd9e Added time_shift() method to Evoked class.
new 123a3e5 Added unit test for checking time_shift() method in Evoked class. Additionally, the time_shift() method itself was made more efficient by unifying the absolute and relative conditions in one statement.
new d9b4568 Changed assert_array_almost_equal() to np.allclose() for the data because it is more robust to variability of scale.
new e48cfee pep8
new 8255bd4 ENH: addresses recent discussion
new 9263287 COSMITS
new 1193d93 ENH: ... what's new.
new 43532f0 Merge pull request #539 from dengemann/kill_mutable_defaults
new ad9d66b ENH: add channel name property to epochs
new 0f4eb80 FIX: deleted one line too much
new 8e3e1bc FIX: + add test for equal length of info['chs'] and self.ch_names
new ed850e1 ENH: improve test
new 9b06451 social media buttons
new a3995c1 Merge pull request #537 from mluessi/emb_twitter
new 9227ccb Merge pull request #541 from dengemann/ch_name_property
new e5526cb ENH: Better progressbar when downloading data
new aace900 BUG: Fix version number for pandas
new 8f4049e Merge pull request #546 from bburan-galenea/readme-fix
new f40ffba BUG: PEP8 fixes
new 13320ae some website fixes
new 105223a FIX: support tests for pandas dev version
new 8004cb7 Stylistic changes to commit
new 8f74c6a ENH: pythonic version handling
new 671b4f2 Merge pull request #545 from bburan-galenea/download-progress
new f968dc0 Merge pull request #547 from dengemann/pandas_git
new c3c4de7 WIP/API/ENH: create epochs in ICA space
new b28288b FIX: remove unsuited score func test cases.
new 0d76357 ENH: realizing epochs.sources_as_epochs_from_epochs
new 2586b9f ENH: addressing recent discussion
new a233cde ENH: ... hwat's new
new fb20f1c ENH + FIX: addressing discussion + add picked data
new 52b5f4c CLEANUP example
new 4a366dc ENH: take advantage of Epochs ch_names property
new 849b18e COSMITS
new e129d6a FIX: example
new 384c98b ENH: call pick_types correctly
new ea01f4b CLEANUP
new c9a2386 Merge pull request #540 from dengemann/ica_epochs
new ea27553 fix doctest
new 1d45648 FIX: set ica_epochs to preload
new 304cb5e ENH: make sure projs are removed
new 910d079 ENH: set ._projector to None
new a69b637 Merge pull request #549 from dengemann/ica_epochs
new f5f8d05 fix: use label in example
new 6e21e4f Merge pull request #550 from mluessi/fix_ex_label
new cff0382 fix n_times_in
new fd26d14 Merge pull request #552 from mluessi/fix_n_times_in
new db6fd77 con. enh., psi estimation
new 07c7d40 FIX: attach asources as bads, not meg channels
new 00478d0 FIX: fix test
new 0eff632 ENH: Added temporal decimation to Morlet analysis
new 20a0b09 Merge pull request #553 from bburan-galenea/bburan/tfr-decim
new 24fd6c5 Merge pull request #555 from dengemann/ica_epochs
new 6431c81 ENH: Add non-replacement to events
new 74a75c9 WIP: time_shift() method for Epochs class.
new dc541b0 No more bugs in shift_time_scale() method in Epochs class
new 6d7360a Corrected dashes in the docstring
new 122a72e Preloading of data not required. Ancient relic that must be discarded
new 0cf74cd Added example for time-shift and added time-shift in events.py
new 13f4cdc Dropped support for time-shift in Epochs class in favor of time-shift at the events level
new 5df094b Changelog modified conforming to the usual practice of appending newer changes to the bottom
new 490554b Shorter name for time-shift in Evoked class
new 755e7c2 Small mistake in whats_new.rst rectified
new 0fe257c MISC : cleanup time shift
new 29037f0 typo
new 99a6358 Merge pull request #556 from Eric89GXL/events-combine
new 3b675d6 cleanup
new 58e9c92 Merge pull request #554 from mluessi/con_psi
new 56c7615 use rng seed, what's new
new 09482de Merge pull request #558 from mluessi/fix_con_psi
new 1857cdc misc
new 2261e76 ENH: Use codespell
new 7593d79 FIX: Minor fix
new b6a0353 Merge pull request #561 from Eric89GXL/codespell
new 9dc4f03 ENH run_subprocess(): logging end error handling
new fcad290 FIX TEST: missing subjects_dir in test_label
new a2bb31e FIX: run_subprocess()
new 38ad4bc FIX: add missing subjects_dir argument to test_forward
new 37e36e4 WIP ENH: Add TFCE
new 179ba1c ENH: Add haircut support
new a2879ed ENH: Speeding up TFCE, cleaning up code
new e20dd15 ENH: Faster
new 0e5c818 ENH: Adding example
new 8d0b244 STY: Cleanup
new 08337e7 ENH: Adding more tests
new ddbbbdb FIX: Fix example
new 94259de ENH: Better examples, testing, and fixes
new a36b745 FIX: Minor fix
new af12971 ENH: Updating whats new
new 6e1d17e ENH: Better handling of bad thresholding
new 7c7e64e FIX: test_forward
new 921c062 ENH: as_data_frame method for STC objects
new 150c7a6 CLN: refactor + standardize data_frame internals
new 79a11b7 CLN: add pandas checking function
new dc17028 FIX: addresses @mluessies concerns
new 3784004 FIX: ImportError / RuntimeError
new 9a6061a ENH: what's new
new f55693e Merge pull request #562 from dengemann/stc_pandas
new 54ad5b9 Merge pull request #565 from christianmbrodbeck/subp
new 3af1785 ENH: allow for multiple stc views via mlab figures
new 9b61391 ENH: add test
new 5e5fccc FIX: addresses recent discussion.
new 473265b FIX: Fix test
new c6347ad Merge pull request #566 from Eric89GXL/plot_stc_new_fig
new 1f6b8d6 FIX: Minor fix for vol src space
new 447a237 ENH run_subprocess(): warn if PATH contains a path starting with ~
new 450faab Merge pull request #570 from christianmbrodbeck/subp-warn
new 0bfd647 Merge pull request #568 from Eric89GXL/vol-fix
new 84ea369 FIX : subplot index start at 1 in pylab (breaks on hold versions)
new 4052bdd STY: direct doc strings for cluster_level
new c94d8e6 CLN: more cleaning.
new a77e01b Merge pull request #572 from dengemann/cluster_level_cln
new 0a79bc7 WIP ENH: Resume dataset downloads with NILS code
new 245fd6d Code copied from NILS now uses ProgressBar
new 7387cfd Use ftplib to resume downloads
new f03d6ac Remove unused code from NILS
new 035d800 Add update_with_increment_value() to ProgressBar
new acefb56 Update progress bar during resumed download
new 6f6df68 Separate ftp resume code into new function
new 11ac27a STY Remove trailing underscores in function names
new c6eae55 STY Make attributions consistent with older code
new 0c1d706 FIX Display archive name when downloading
new 181b5df STY Several small changes
new a20642d STY Remove blank line
new 920f089 Remove unnecessary parameter and checks
new c24bca0 FIX Small corrections
new 208ef09 Remove more unused code
new c7b12df FIX deprecated doc
new 89db9e5 Resume HTTP downloads
new 643f8f9 Small code cleanups
new 649ac10 Remove unnecessary overwrite code duplication
new 1211b66 Make _fetch_file behave more like old code
new ba2f562 Use new download with resuming code for all example dataset downloads
new 332c0b8 Remove unused variable assignment and related module
new 624d324 Simplify download messages
new 662b75b PEP8 fixes
new c98391e PEP8 fix
new bfdf520 Remove remains of conflict fixing during rebasing
new 0246b69 FIX usage example for deprecated
new 7068a46 TST : add test for deprecated
new b310724 FIX: add missing modules to setup.py
new b145327 Merge pull request #573 from dengemann/fix_bti_setup
new 8d12e80 FIX Make initial_size an optional parameter for ProgressBar
new 6111d24 FIX: Projection __repr__
new 4a30a3d FIX: return projections as Projection instance
new 0ea6bae ENH: plot topomaps
new 6d9e271 ENH: add viz.plot_evoked_topomap()
new 028f1f2 FIX: avoid circular import
new 3d33cfd TEST plot_evoked_topomap
new d65e8e4 ENH: spatio temporal decoding in source space
new fa60dbb update what's new
new d89404d FIX: Setup script typo
new 81e3d57 FIX: address github comments
new 5676589 FIX: plot_topomap axes handling
new 6bd3b43 ENH: add plot_evoked_topomap example
new 88005d5 ENH: clarify docs for apply inverse raw / epochs
new 597e37c ENH: addressing discussion.
new e1bf529 STY: plot_evoked_topomap example
new 0716eae Merge pull request #577 from dengemann/inverse_docs
new 15e43a9 FIX: Deal with indices more cleanly for numpy 1.8
new 138021b Merge pull request #579 from Eric89GXL/numpy-fixes
new 38e55ce FIX: Better step-down-p support
new 25d396a ENH : add tstart option to mne_compute_proj_eog.py
new 9a31ee8 FIX : reading epochs at the limits of a file
new 6fe67b5 update what's new
new 2969246 FIX : no need to pass sfreq when passing Epochs to spectral_connectivity (cc/ @mluessi)
new 31bf5ad deleted bug when all simulated sources are located in only one hemisphere
new 1837954 ENH: add repeated measures twoway anova function
new 80c5cb7 COMSMITS
new 9e9c94c ENH: add test + fix bug in effect coding
new d9db1fa ENH: actually add the file ...
new 813032f ENH: fix GG adjustment
new b519cc8 ENH: add Time-Frequency repeated measures example
new f706192 COSMITS
new 6eb9209 ENH: address discussion, improve efficiency
new 97fbdeb ENH: various enhancements
new e69f33e COSMITS
new f455ef9 Rebase + update what's new
new 12901db COSMITS II
new 56b5505 FIX : bug in cluster stats (issue 584)
new f8fe03a ENH: add dsPM source space example
new 526d851 FIX: tfr example
new 73d1ba8 ENH: use consistent file names
new 74b1016 FIX : add cluster stats test
new 47f579e ENH: various enhancements
new d79c1fc ENH: various fixes
new 408150e ENH: add external test + update names
new 1d2450b ENH: add missing test
new 6362dbd FIX: last commit
new c9ab4cf ENH: address discussion, improve tests
new 1b98ed6 ENH: improve time series plot
new 88e835a FIX Wrong variable name breaking data downloads
new c205e60 Simple test of download functionality
new b74c960 Skip download test if no internet connection available
new 4afbdb6 Merge pull request #588 from rgoj/fix-recently-introduced-download-bug
new bba772f FIX: Incorrect function docstring
new 4021079 ENH: speed up spatio-temporal example + misc
new 620733a Update plot_cluster_stats_spatio_temporal_repeated_measures_anova.py
new 3fe86a3 Merge pull request #580 from dengemann/rm_anova
new 88637e5 TEST: cluster stats test
new 8f10e29 CLN: white space cleaned
new ba531b8 FIX: hard code data for consistent tests
new 30a51a5 COSMITS
new 2537d65 ENH: use array literal
new f41d90a Merge pull request #593 from dengemann/fix_anova_test
new d43765f WIP: complete drop log
new cfa0f2d COSMITS
new 3139bc8 ENH: add tests, fix bug
new fd6b3d2 ENH/STY: simplify drop_log add on
new fd0fad1 Merge pull request #594 from dengemann/improve_droplog
new 5d0c29e TST: reduce cluster test time
new ec766b9 Merge pull request #583 from joewalter/bug_in_simulator
new d207b0f FIX: Fix M/EEG forward solution
new 60f7a2b ENH: Test execusion speed
new fed84a9 ENH: refactor drop log private function to fix bug
new 6435c4c COSMITS
new 281c928 Merge pull request #596 from Eric89GXL/fwd-rw-fix
new 36f9b54 Merge pull request #586 from trachelr/stats-bug-fixes
new 54e27aa Merge pull request #597 from dengemann/improve_droplog
new 0299a5b FIX: backporting matrix_rank
new ef57264 COSMIT + proper conditional backporting
new caaa145 Merge pull request #600 from dengemann/fix_test_parametric
new 02065bc ENH plot topomaps: plot sensors as points
new 174ad2b FIX: drop testing support for pandas < 0.8
new 89ebc92 ENH plot_evoked_topomap(): accept sequence of time points
new b2dea4a OPT: data indexing in topomap plot
new fd775c2 Merge pull request #601 from dengemann/fix_pandas_index
new 649c943 Update epochs.py
new 1a5f312 ENH: new stc cluster summary function
new 3230ab3 Merge pull request #607 from dengemann/stc_summarize_clusters
new 21700b4 WIP/ENH: allow for return_generator argument with lcmv epochs
new 89eb834 ENH: address discussion
new 407b7e1 ENH: address discussion
new cef63a6 Merge pull request #602 from dengemann/lcmv_return_generator
new b0dca06 WIP: add draft of gamma map implementation
new 61b177d wip gamma_map
new 8602dbc gamma map method
new 76665de gamma map cleanup
new cf5676e cleanup, moved mixed_norm
new 60df423 deprecated mixed_norm module
new aff80cd cleanup, renamed
new c2f00d0 update what's new
new 663ad3a remove return_residual
new 63db4cc option to return residual
new 0ac3ac1 Merge pull request #578 from mluessi/gamma_map
new f0c6c5e attempted FIX:
new 6522f5e ENH+FIX: truely delayed SSP
new 6b7fa48 ENH: hide delayed preprocessing
new 3833754 COSMITS
new 5835029 ENH: preallocate where neccessary.
new 462ab8a ENH: empty_like
new 013dbb0 ENHL add missing test
new f7857dc Merge pull request #606 from dengemann/fix_delayed_ssp
new 47704bf ENH: regex + substring match for labels from parc
new 694746b ENH: test using real regular expression
new 1d6b7b9 ENH: update what's new
new 4bb02d5 COSMITS
new c449a90 COSMITS
new fb1d732 Merge pull request #610 from dengemann/parse_aparc
new 7f836d2 ENH: incorporate pl.show() in plot_evoked_topomap()
new b1a8790 ENH (WIP): coordinate handling when plotting topomaps
new 70244ca ENH : add default times in topomap (@agramfort)
new d60ac69 ENH : adding plot_projs_topomap function with example
new d8f93b9 FIX : improve support for CTF system
new 30260cb FIX + ENH : add docstrings + fix bugs in CTF compensation
new f6eaed9 FIX : fix in make_compensator
new 98734bb STY: simplify make_compensator
new e60d6f7 ENH : get rid of useless findall function
new 2f46974 ENH: add Evoked.plot_topomap() method
new 34664d3 ENH topomap plotting: merge grad channels using RMS
new c288bb7 FIX : was broken by last commit ...
new 2ba842f typo
new f8e1286 API : deprecate CTF compensation in Epochs and move it to Raw
new a9721ce update what's new
new 9b14a26 TST : add some tests for compensation
new be0e9ed ENH : move CTF raw to _read_raw_file
new ad8aa62 FIX address comments, better errors, TESTs
new f410f23 FIX test_viz: missing subjects_dir parameter
new 5a3c5d4 MISC : cleanup suggested by eric
new d3236a4 FIX : revert compensation when writing
new 32334ab STY: Comment typo
new f89eaef FIX : add comp to RawKIT
new 582141c ENH plot_evoked_topomap: subplot scalings; add scale and unit parameters
new 16fa06b Merge pull request #612 from agramfort/ctf_fixes
new 7c88f78 ENH: SSP toggle box for plot evoked
new 6cd9c30 ENH: fix corner case in proj.py, refactor plot
new b41108f ENH: unify code base
new dd2eb8b FIX: address issues rasied in discussion
new 5f5f1a9 ENH: improve example
new 2ce1be5 ENH: improve semantics, example and internals
new 1cef16d COSMITS
new 676f3c1 FIX: topomap plot sizing and update Evoked.plot_topomap()
new 7f79b87 DOC/default plot size
new dbf4be9 FIX: nasty bug preventing raw plot updates
new a45cba9 Merge pull request #619 from dengemann/fix_plot_raw
new 1d05164 STY: Adding more inverse docstring
new 69f4161 STY: Clarifying
new b8d399b CLN/API: deprecate read_stc
new 8f06743 ENH: complete drpecation
new 0484fde ENH: update tests
new 31ff5cb FIX: import read_stc
new d4e0316 FIX: Fix tests
new 8bec69c Merge pull request #621 from Eric89GXL/inv-table
new 17d641a STY: Cleaning up test warnings
new 2f47094 Merge pull request #622 from Eric89GXL/deprecate_read_stc
new 743a41b ENH: add Epoch.__len__
new 169f2d2 Merge pull request #614 from christianmbrodbeck/eplen
new b2d6efc API : make a few functions private + tiny fix + pep8
new cd315a4 Merge pull request #5 from agramfort/topomap2
new ec9a5e1 ENH: Update authors
new 59da314 FIX: Add Teon
new 6c54db1 Merge pull request #624 from Eric89GXL/update-authors
new d4c501e ENH plot_projs_topomap(): properly combine grad channels
new 435af68 update what's new
new ad52e94 Merge branch 'pr/575'
new 2e475f9 FIX-FIX-FIX
new b23360a COSMITS
new 0c2f135 ENH: improve example text
new 82d9b08 Merge pull request #627 from dengemann/fix_improve_delayed_ssp
new 41f19cd pep8
new f537723 FIX: plot_projs_topomap() subplot layout
new 6ebf286 TEST: topomap plotting
new 35462dc Merge pull request #629 from christianmbrodbeck/test
new b777af2 ENH: add delayed SSP for plot_topomap
new 32df145 update what's new
new 59fdd84 STY + COSMITS
new 444a5f4 STY+ENH+COSMITS:
new a0a3f8e FIXES
new 43dbb0f Merge pull request #630 from dengemann/improve_ica
new 4cd2c5e Update whats_new.rst
new a9f1853 Merge pull request #628 from dengemann/fix_improve_delayed_ssp
new 168b39e FIX : attempt to fix buildbot
new 605684c revert
new cd2e300 WIP ENH Picking normal orientation in beamformer solutions
new 40bec71 STY Small changes
new faa8786 FIX Exception should be ValueError
new 6f302cf Better picking of normal orientation in beamformer
new 4a54792 Updated docstrings with pick_ori parameter
new d970848 Remove trivial check
new 36c86ea ENH Add optimal orientation picking in LCMV
new e9d3017 Compare orientation picking in LCMV example
new a99132d Compare orientation picking in LCMV volume example
new 3efd78f Move normal orientation calculation
new 2620fac Modify normal orientation test
new 32b1c2a Clean up optimal orientation implementation
new 9aa6b86 Clean up LCMV volume example
new 424210f Clean up LCMV example
new a892ebf Mention orientation picking in example docstring
new 4ec6ef1 Small changes to docstrings
new d36cc67 Calculate lcmv solutions within a loop
new 88ebd80 Modify example for consistency and ease of viewing
new 337f2a9 PEP8 fixes
new f1dcb7c Use eigh instead of eig for symmetric matrix
new 977dd8c Fix spelling mistake
new edda402 Choose middle eigenvector instead of minimal
new afa3fc7 Return absolute value of solution for optimal orientation
new a307116 Changing name optimal to max-power
new 6c1a3b5 Remove pointless tests of orientation picking
new faa586b Revert beamformer volume example
new abdaa95 More accurate comment
new 142a313 Check for volume source space when picking normal orientation
new 9f5fabc PEP8
new 67bfcd8 Update what's new
new edc4c09 Add blog link to what's new
new 3e85b0a Merge pull request #581 from rgoj/lcmv-pick-normal-issue-571
new 07dd55e FIX : doc building
new 97739ce FIX : cleanup topomap example for doc
new 4ce7b74 FIX: fix ICA start/stop == None
new 0c66770 FIX : viz test bug
new 8f158e5 ENH+FIX : topomap on evoked was broken for new neuromag systems
new 39e7926 FIX: address layout is None
new c68a157 Merge pull request #632 from yousrabk/fix_layout_recent_neuromag
new 85721dc FIX Remove code left by mistake during rebasing
new b6d48da Bringing back orientation picking tests
new aadbb6a Merge pull request #635 from rgoj/fix-lcmv-pick-ori-example-bug
new b3dff01 misc doc fixes
new 9737571 Merge pull request #638 from mluessi/misc_fixes
new 2e72f91 ENH : add IO support for fieldtrip .lay files
new 2db78d7 Merge pull request #640 from agramfort/io_fieldtrip_lay
new d03ac26 FIX plot_evoked_topomap() figure width
new 114a710 ENH : add format param to colorbar string values
new 7edfc85 ENH+FIX: topomap for evoked was broken for layout auto and new neuromag systems
new 8edbddb ENH : topomap for evoked
new 55786fc FIX : indentation problem
new 5a090b5 Merge pull request #642 from yousrabk/fix_plot_evoked_topomap
new c09f970 FIX Move lcmv normal orientation picking
new 9b93286 FIX Move normal orientation picking after noise norm calculation
new b3444b6 ENH: magnes improvements pt 1
new 6cdeeb6 COSMITS
new 833cd21 Merge pull request #647 from dengemann/magnes_layouts
new 8eefb4c enhancements to topo plotting
new a7668d3 ENH: refactor code
new 55aa7ff COSMITS + FIXES + improve test
new 39ede07 FIX: fix topomap example
new 1c15730 ENH: add delayed SSP
new 6fd25d2 FIX+REFACTOR delayed SSP
new fb0c15d COSMITS
new 59df404 ENH+API: refactor, improve code, doc + debug
new 96357d9 FIX: revert previous layout edits
new 9d64960 update what's new
new 3c2f7c2 ENH: add tick control
new 73bfaa9 COSMITS
new 37ade44 COSMITS
new d3c606b ENH: onpick
new bbbee5a ENH: make @agramfort's line perception happy
new 5c8bc29 ENH: improve vline, address discussion
new 821f2e3 FIX type handling
new 4461c72 ENH: add layout guessing, address discussion
new b1cf732 Merge pull request #634 from dengemann/add-scaling-and-labeling-to-topoplots
new c0b44d5 ENH+FIX: refactor topo plot functions
new 1a8cbc8 COMSITS
new 583c1ed STY: indent problem
new 3d2d018 Merge pull request #649 from dengemann/add-scaling-and-labeling-to-topoplots
new 9095401 Merge pull request #643 from rgoj/move-lcmv-normal-orientation-picking-for-consistency-with-minimum-norm
new bff9614 ENH: add catchers to topomap
new 372aa2d FIX doc
new 878bf7c Merge pull request #650 from dengemann/add-scaling-and-labeling-to-topoplots
new c6f3d20 API: remove artifacts
new 4e24cf4 update what's new
new c75b209 Merge pull request #651 from dengemann/remove_artifacts
new fc222af FIX: pandas exporter
new 0de091e ENH+FIX / MISC
new 788cf96 Merge pull request #653 from dengemann/fix_docbuild
new 9b3d42c fix mailmap
new f79dd51 fix mailmap more
new 3bc8a3e COSMITS
new 306d579 FIX: compute noise cove raw example
new 35a4928 Merge pull request #654 from dengemann/fix_docbuild
new 42a10a3 FIX : removing for now the normal option in LCMV (broken)
new 6ddca2b DOC : formating
new 9c099ad Fix what's new
new bc1614a cleanup docstrings
new 8ef33b1 ENH: sex-up ICA epochs example
new 30d555b FIX: revert unintended changes on raw example
new 0a23465 COSMITS
new ea4259f COSMITS II
new 60f8191 Merge pull request #655 from dengemann/fix_docbuild
new f0e3d0b DOC : fixing docstrings...
new 5c70e0f more docstring clean ups
new eedd8d8 FIX: revert layout for TFR
new c14804e FIX-2
new f837a02 FIX: revert layout TFR
new edb73b7 Merge pull request #656 from dengemann/fix_docbuild
new d85e5d8 DOC : more formating + adding show param to plot_raw
new 57c3660 update what's new
new 52e86cd bump version number
new bebe2fb forgot manifest...
new c164c39 bump version number to 0.7.git
new dfcb08c FIX plot_read_forward example: specify subjects_dir
new ca8b584 Merge pull request #658 from christianmbrodbeck/fix-subdir
new 73b9440 ENH: info class
new 87f7466 FIX: add files
new 6a6b819 FIX TESTs: add subjects_dir parameters
new f64f87e FIX: indent
new 6fa3a8b Bring back broken normal orientation picking to LCMV
new 4654386 FIX Broken normal orientation picking
new adbcdc3 Update what's new
new ff77920 ENH: unobstructively implant info class
new bd8ac25 Bring back small improvement in how division is written
new be34674 ENH: refactor + move tests
new b2a0335 polish + finalize Info implant
new 0ebfcec FIX: keep using copy.deepcopy for now
new d6422a9 FIX: unintended BTI change
new 200911d COSMITS
new bf995b0 Merge pull request #660 from christianmbrodbeck/fix-subdir
new ed7eab0 ENH: improve string summaries
new ba8bcf1 ENH: add repr to tutorial
new 384eee5 Merge pull request #659 from dengemann/info_class
new 9a2b551 CSP implementation started
new 41dcf57 Update raw.py
new 450e04b CSP implementation started
new 35db24d CSP code updated
new 51659bb FIX: PEP8, decompose_epochs fixed
new 02272ac FIX: API and STY, add plot_sources_maps
new 5460d76 decoding with CSP example added
new 0875cb6 CSP implementation started
new c39282a CSP implementation started
new d9b44a1 CSP code updated
new ba486c0 FIX: PEP8, decompose_epochs fixed
new 9db7461 FIX: API and STY, add plot_sources_maps
new 8009e1c decoding with CSP example added
new cd518ef TST: test_csp added in mne/tests/
new 7909dae CSP API cleaned
new 3195049 Merge branch 'csp' of github.com:trachelr/mne-python into csp
new 1129c4c API modified, test and example cleaned
new e6569fd pick_ori instead of pick_normal in minimum_norm tests
new 2f9946e pick_ori instead of pick_normal in minimum_norm
new 7cb451f pick_ori instead of pick_normal in minimum_norm examples
new 0ceb3fc pick_ori instead of pick_normal in comment
new 942086d Update what's new
new 203f3d2 Add deprecation warnings for pick_normal
new c3434cd FIX Move pick_normal param after verbose
new b4d9189 PEP8
new 5c96ead Place API change under 0.7 in What's new
new 3306b57 ENH : refactor CSP code
new 89edbee Add tests for orientation picking
new 5b25696 remove old deprecated dSPM arg in minimum norm
new 77e3726 Merge pull request #663 from agramfort/remove_dSPM_arg
new d7560f4 Merge pull request #661 from rgoj/fix-lcmv-flat-normal-orientation-bug
new d85c12a ENH: save_as_volume method
new ac50ecf correcting docstrings in proj.py
new e02e70d Merge pull request #667 from joewalter/proj_typos
new 31f8e71 ENH: add info to ICA
new bfaae50 FIX: ch_names
new db6378c ENH: improve test
new d38493e FIX: nchan
new b8ad960 update what's new
new 6b03ab6 FIX what's new
new 7304f63 FIX merge
new a79d761 COSMITS
new e1f4ac0 ENH: address discussion + COSMITS + fix viz
new 20c6f69 Merge pull request #670 from dengemann/ica_add_info
new b33ffdc ENH: Volume SourceEstimates
new 44e4207 test fixes
new 52ed76f fix pandas export for vol stc
new c0fd82e fix example
new 90300b2 comments and API updated
new 385a529 ENH : cleanup CSP (Pipeline does not work yet)
new 1721b00 FIX: make cross_val_score work by dropping support for Epochs
new 6ae0e2c FIX: subject is None
new 99e25d0 Merge pull request #5 from dengemann/vol_stc
new 03b3de0 Merge pull request #671 from mluessi/vol_stc
new 1399471 more cleanup...
new 8f67128 misc
new ba3686b Merge pull request #662 from trachelr/csp
new 1e2188d update what's new
new 0fc1244 FIX : use consistent name for test_meas_info
new c608c83 WIP: add ICA plot topographic map
new 8765d95 FIX: funciton handle
new 61f9dd4 ENH: add test
new b36b5a4 ENH: update tests + example
new 57f8cbd ENH: use iteration
new dbaf202 COSMITS
new feef336 ENH: remove unit
new bbb5538 update what's new
new 7119e84 COSMTIS
new bb35d30 Merge pull request #666 from dengemann/topomap_ica
new 00f9bc2 ENH: add float selection on picking sources
new b6aeabb Merge pull request #679 from dengemann/topomap_ica
new ef9df27 ENH: memory tweaks
new a14243b ENH: slices instead of data
new f73cf8a Boom.
new e26017f STY: reduce verbosity
new 6759449 Merge pull request #682 from dengemann/memory_ica
new b18701f ENH: prevent stim artifact reduction to fail if user sets tmin>0.
new 0ef361d Initial MNE real-time commit
new cf9e06a [cleanup]
new 4a6b955 read real-time header info
new 23724c8 set alias
new dfddbfa cleanup and some coding python guide lines
new e50d480 read meas info
new 9a5b349 almost - read raw buffer doesn't receive all data jet
new 742a65f working raw buffer reading
new 04b4767 code style
new 4cb342b cleanup
new 11cb4ea WIP: realtime
new 9bf0e8f BaseEpochs, various enh
new a5e2263 rt rebase, fixes, example
new ff44d73 update setup
new d711227 Small example for real-time decoding
new a10876f Added missing coma in setup.py Modified decoding example to compute accuracy with 80 training examples and 20 test examples. A minimum chunk size of 20 has been defined for now
new 397dc5c Simplified the example a lot. The real-time plot remains
new 7ab1247 Added real-time plotting to example real-time decoding script
new 64e2177 Fixed issue of accessing private function by using list comprehension (?). Declaration of variables was made more python-like
new 3695547 Removed redundant variable
new 4c1cfb5 Some thoughts to how the real-time decoding can be structured
new 0727449 Trying to convert the newly created example into class/method format. Some issues with importing the new class ...
new 563363c Fixed PEP8 for compute_rt_decoder.py and now plotting only last 5 points in real-time plot. Also added RtClassifier in __init__.
new 0b3f0f5 Misc. changes - added new name to __init__.py and comment for waitforbuttonpress
new 6a1d727 Modified classifier.py so that it is general enough to take clf from any classifier
new 32fb5dd Added iter_evoked() method to class _BaseEpochs. This will allow Evoked arithmetic to compute averages.
new e59d55c Modified iterate_evoked() function to allow iterating over RtEpochs also. Modified moving average example to display an xplotter style online-averaging
new 14ec0f4 Added a keyword argument return_event_id=False to next() in RtEpochs as well as Epochs class.
new 91b2e7e Modified the code to return actual event-ids rather than the dictionary of possible events from the iter_evoked() method.
new e56e781 Always return event_id in _pop_epoch()
new c0281d2 Modified classifier.py to add the Scaler class which subtracts the mean across channels for each channel type. Fixed PEP8, spaces around operator in epochs.py
new 9b8a39f Fix small bug in Scaler class
new d0ffe24 Added PSDEstimator class to classifier.py
new 3aa0a19 Added FilterEstimator (which won't work as of now). Will have to figure out exactly what must be imported and from which file
new 2d8d4da Added a class to concatenate time-series across channels
new e9541af Added file for testing pipeline and also added TODOs to the classifier.py file
new 5c3a6c0 Testing reshaping of 3d epochs into 2d epochs
new 58e7aef 3d array to 2d array reshaping verified
new 06b3691 Corrected concatenation of channels. transpose is not required. Also, the pipeline now makes use of inbuilt sklearn transformers to scale the data. The accuracy is back to normal (>90%)
new 2d6f29f Uses iter_evoked() method in epochs that was newly introduced and pipeline
new 9374ec1 Remove confusing duplicate of decoding example
new f431415 Modified real-time decoding example to show standard deviation across cross-validation folds. Also modified ConcatenateChannels() class to add fit_transform() method.
new 72840f7 Removed redundant variables trnum and tsnum
new 2451bab The only option for the FilterEstimator class seems to be to duplicate the logic from mne/fiff/raw.py
new 1c1fd23 Misc. fixes to FilterEstimator
new e984b94 Added docstrings to FilterEstimator and also updated the example to include filtering in the pipeline
new d8078c7 Updated docstrings
new 6a38ace Small fixes
new 38ccbea Removed offline_testing folder
new 349ab3e Updated Scaler class to have division by std. deviation as well
new 9ac0a0a Added more structure to PSDEstimator class and also fit_transform method to Scaler class
new 25b7c01 Commit to save changes before attempting a rebase w.r.t. to master
new e780bdf FIXES
new 3b785d9 FIXES 2
new 4f93f93 FIX 3
new 472f1d1 FIX 4
new 7e8c68d Implementation of MockRtClient together with modified examples
new 9dde928 Misc. fixes and change in API for sending buffers from mock rt_client
new 67646a4 Added TransformerMixin to MNE-Python
new 44a4910 Use tmin instead of tmin_samp as argument to send_data() in RtMockClient
new 7e5da2a Added unit test for mock client, but the test doesn't work yet
new 83f71bb Modified the test to directly check if the epoch_queue is the same as the raw data
new 6aa5ed1 Reverted to checking equality of epochs. Some issue with calibration factors. Added test for checking equality of shape. Some PEP8 fixes too.
new cdcbc85 Addressing @agramfort 's comments and adding test_Scaler(). More tests to be added.
new 883dbd9 Unit tests + fixes
new 6868c46 PSDEstimator Unit test works, but mockclient still has problems - Unit test for PSDEstimator now works - Rectified duplicate assert_raises (cc @agramfort) - seems like that the rt_epochs.get_data() returns something fishy when used with mockclient but the epochs queue looks good (cc @dengemann)
new c962748 Calibration + Unit tests
new ab68cdf Unit tests pass
new 5e9f4b2 Added test for iter_evoked()
new f1b6901 MISC : cleanup in realtime
new fbfb3aa MISC : rename examples so they get plotted in the examples gallery
new 7b9181c API : simplify RtEpochs (no consume_epochs, max n_epochs but just a timer betweeen epochs)
new 2035552 addressing mainak's remarks
new 7e4936b Remove redundant n_epochs from moving average example
new e1b0cef Created decoding module
new d4538b0 Updated authors list
new a451285 Updated whats_new.rst
new 92b90d9 Modified realtime examples for sphinx docs
new 3196f0d Python Reference + Fix
new 8312821 Addressing @agramfort's comments
new 5a279f2 Forgotten tests folder
new 0206cc8 FIX: No drop_log property for read epochs
new d7414f7 Making contributing.rst more beginner friendly
new d81d3bc Adding info about mne-scripts
new dc63bc2 Merge pull request #687 from Eric89GXL/drop_log_fix
new 93ecd68 Addressing @agramfort's comments and adding more stuff
new 3e12a4e Addressing @dengemann and @agramfort's comments
new f906d80 Minor fix
new e78bab0 Minor fix #2
new 61894e5 Making ipython in all small caps
new 7240132 API : simplify CSP component selection
new c127342 Merge pull request #690 from agramfort/csp_fix
new b02252e ENH : Allow regularized covariance in CSP
new b41472e added more tests and included all channels except stim channels in the artifact procedure
new 0053ca1 interfaced with sklearn covariance estimators
new f608584 Merge pull request #683 from joewalter/stim_artifact
new 3d1210f Misc changes
new 734bb3c interfaced with mne.covariance.regularize
new d378097 add tests for regularized csp
new 2329fe3 Small fixes suggested by @rgoj
new e284d79 Merge pull request #688 from mainakjas/contributing
new c481275 CSP fit with mne.covariance removed
new 796ce3e regularized CSP example added
new 1900911 regularized CSP example modified
new 1d91dad comment modification
new a0e71c2 set group when updating website
new 2a48538 Merge pull request #691 from trachelr/csp-cov-reg
new d8979c9 FIX: sklearn version checking for regularized CSP
new 0fa39db Merge pull request #695 from trachelr/csp-cov-reg
new 5684c76 use TransformerMixin, csp fix
new eabfbd5 sklearn is not Firefox
new d0a0a12 Merge pull request #698 from mluessi/use_TransformerMixin
new 3d9b66c ENH: add copy param to ssp functions
new f6d09ec Merge pull request #702 from dengemann/fix_ssp
new 25e0f63 ENH/FIX: use RandomizedPCA for whitening
new f2ceeb2 CLN: clean up tests
new 6294db4 FIX: whitening
new 1b2329c ENH: add recovery test
new dc15f39 ENH : cleanup ICA internals + fix some tests
new ddd8fd0 FIX : fix plot code + add plot topo to demo epochs
new 96fbfbe FIX: partial fix
new eb0a4d8 FIX: revert picking / zeroing order
new 4b5d876 ENH: improve scaling in new plots
new 940cba7 ENH: improve epochs example
new e4f7814 FIX: revert test + drop type checking ica.exclude
new 70fce88 FIX: revert unintended change
new 76cb787 FIX: raw ica example
new 1b621de Merge pull request #697 from dengemann/ica_pca
new 0052ae1 ENH: faster + leaner ica_tests
new 7a2f6c6 ENH: add decim parameter to ICA
new 50b993c ENH: add decim test
new a51c430 STY/FIX: better implementation
new 7583f06 FIX: wrong axis
new 9474855 Merge pull request #704 from dengemann/ica_decim
new 93ea9ee ENH: implement reject buffer in ICA
new 739b689 COSMITS
new 41c0e04 ENH: improve test
new 7fd7019 ENH: fix data buffering
new 6b154b0 ENH : simplify reject in ICA
new fde02b2 Use joblib memmapping pool
new 64789bf FIX: Deal with scikits.cuda throwing OSError
new d6d9686 typos etc
new 658b6ff max_nbytes str, buffer size
new 0101a07 ENH: added cal & ctc option, and added space in mv_hp string
new 8340d20 FIX: Fix description of Epochs
new a99b2a0 FIX: changed the order of options
new c2ce0fb Merge pull request #709 from MadsJensen/issue_708
new 18c5029 buffer_size=1000
new ba7e9ad WIP Example implementing DICS pSPM calculation
new e097ac9 STY Use frequency mask instead of list of indices
new c043f50 Add missing call to pl.show()
new 8944b76 Add handling of SSPs and whitening
new 4f67186 ENH CrossSpectralDensity class and compute_csd
new d46311a Add compute_csd to __init__
new 08d9ef2 Use compute_csd in example
new 5942a15 FIX Several small fixes
new 3bef661 WIP Compare CSD implementations
new ebd43f1 Simple CSD implementation using _mt_spectra
new 9ce69e4 ENH Add multitaper mode for CSD calculation
new bb39b83 FIX Correct reading number of time points
new 4eb9ed1 Checks for input parameters
new 74cc042 Tests for compute_csd
new 88317aa Allow tmax or tmin to be None when the other boundary isn't None
new ae31a88 Small fix to matplotlib imports
new b5edae5 Refactor dics example into dics_epochs()
new d4e46c1 DICS example uses dics_epochs
new 7511147 Separate apply_dics from dics_epochs
new 96ec9a9 Return estimated time courses instead of source power
new 35b85dd STY Minor corrections
new 78955a9 Remove uncecessary imports
new 1013683 Fix tiny typo
new b732b97 Rename example and plot single epoch time course
new fb7565d Use less epochs in tests to make it faster
new 73a3efc Remove remaining example file
new 63baba6 FIX Sum power across frequencies of interest instead of averaging it
new 0eec470 Add tests to compare power in time and frequency domains in fourier mode
new f1210de FIX Scaling fourier mode results
new f184636 Add multitaper mode tests
new 2172bf8 Scale CSD by sampling frequency
new 86654cd STY Add one line abstract for the documentation
new 6296bb3 Load one channel instead of dropping channels
new 277e037 Extract label without writing stc to file
new fd69978 Check if projections present before using them
new 1747395 Another check for projections being present
new f44e4fe Add basic tests for dics_epochs
new b73c7a3 FIX noise_csd should not be None
new 75f0e65 ENH Noise normalization using noise_csd
new 46ee08a Small improvements to DICS example
new a75b439 CrossSpectralDensity is no longer a dictionary
new 1fa2d81 CrossSpectralDensity is no longer a dictionary
new 5fbd203 ENH Add dics for evoked data
new a78fd27 Use dics on evoked data for tests
new 975deb3 Add tests for dics_epochs with comparison to dics on evoked
new 339622e Add dics to init for beamformer module
new c7773c4 ENH : prettify DICS example + cosmists in dics
new 4cf8eec FIX : CSD inherit from object
new 2d95161 COSMTIS: example
new 9baae43 TST : fix tests and remove max-power option
new 754e929 Add comment about fixed orientation forward operators
new cf58fe2 memmap_min_size
new 32dd403 FIX: tests + repr
new 6cda0f3 COSMITS + FIX serialization bug
new 6f8c213 FIX: n samples raw
new 8545b3b FIX: read write n_samples
new 8a3dcc4 COSMITS
new 8d6cf28 ENH: improve tests
new 66e4212 Merge pull request #710 from dengemann/ica_enh_repr
new a191a71 FIX: sklearn cs_graph
new 40a588c COSMITS
new cf569cf Merge pull request #712 from dengemann/fix_cs_graph
new 5124099 ENH: Add n_jobs to grow_labels
new 64409d3 ENH: Better test
new b69e0e4 FIX catch error when frequency range too narrow
new cb47de3 Merge pull request #715 from rgoj/fix-compute-csd-narrow-frequency-window
new 0711f18 FIX: Addressing issues with old numpy and n_jobs
new fd58ab6 Merge pull request #714 from Eric89GXL/grow-speed
new 8befd79 Merge pull request #707 from mluessi/joblib_mmap
new 756b942 FIX: find_stim_steps api
new f9c1e96 FIX: set buffer_size=None if test not indep
new 48bcf21 fix: use all vars in test
new 65ad2b9 Merge pull request #719 from mluessi/fix_buffer_size
new 3aa24a7 Merge pull request #718 from mluessi/fix_api_find_stim_steps
new 6347cb9 ENH: better CTF ch_name support
new 27ef33f FIX: remove old code
new b31ac3c Merge pull request #723 from dengemann/ctf_fix_layout
new 7090a21 ENH: Reducing test memory consumption
new 1c5646c ENH: Reduce memory consumption
new 5e5c92b ENH: More leaning
new 022eb9d ENH: Making tests cleaner and more efficient
new 2c48003 ENH: improve sklaern version handling for ICA
new 2564734 Merge pull request #724 from dengemann/restrict_ica_version
new 9d0c81c Update ica.py
new 7edf3a4 misc
new cd98cbf requires sklearn in test viz of ica
new b065e9e FIX: ctf / bti support if comps in info
new 078a797 ENH: Add functionality to work with new Freesurfer
new 5147e3a STY: Fix docstring
new 9b80154 STY: Better docstring
new e10b663 ENH: Cleaning up checks
new 85f2f24 misc
new 32a3a9e ENH: Add continuous HPI position calculation
new d055c9e FIX: Fix docstring
new 29ecd2e ENH: Better testing
new 12ac684 ENH: More doc, less method
new 8ea4a67 ENH: Add whats new
new c45d55e Merge pull request #720 from Eric89GXL/maxfilter-head-pos
new 6a55e8b ENH: new function for decimating surfces
new 9b6f0c0 ENH: add example
new 696b913 ENH: parital vectorization
new c2ebd63 ENH: use TVTK instead + make it work
new 2981ab5 FIX : Triux support in plots and picks
new 4f60a4b ENH: add working test
new b0ab7b2 FIX : use proper RBF kernel in spectral_embedding in plot_channel_epochs_image
new fa9c945 FIX: rewrite fast_dot insertion
new a7fc6fc Merge pull request #713 from dengemann/fast_dot
new f3320b6 ENH: add pythonized mne_make_scalp_surfaces
new eefc90c STY/DOC: misc
new 19db55e ENH: almost debugged. mne_surf2bem fails
new 8af3138 FIX: make it working
new 8ea94ec ENH: cleanup
new 24bf4bc ENH: cleanup2
new b449f98 FIX: Support older PySurfer versions
new f7cce2e ENH: final fixes
new 7879d13 COSMITS
new 22125a4 FIX: diff
new 674680c Merge pull request #733 from Eric89GXL/pysurfer-vers
new 4ebd4c0 FIX: remove testing paths
new 76f1f7e ENH: use QuadricDecimation instead
new 838194c ENH: update-fix script
new 308c2d7 ENH: update-fix script 2
new 7a17406 ENH+FIX: cleanup + make overwrite option happen
new 2791b66 ENH: adjust test to new alogeithm
new 8aea002 FIX: doc
new 723a4a6 ENH : add verbose param to mne_make_scalp_surfaces
new 432f060 ENH: improve naming
new fa60fc1 Merge pull request #731 from dengemann/decimate_surface
new c71658a API : slight edits to surface decimation
new 5847803 Merge pull request #734 from agramfort/surf_decim
new 1e72ef3 WIP ENH Add dics_source_power
new ad48ff1 No need to repeat source power to create source estimate object
new 10beb6e ENH dics_source_power now supports lists of CSD matrices
new 281cba1 ENH Return list of CSD matrices for multiple frequencies
new 44987a2 compute_csd returns list of frequencies of interest
new 3a46c7a Set frequencies in the returned SourceEstimate
new 2f6d5e9 Improve logging for dics_source_power and compute_csd
new 548c587 Scale frequency values to display them properly
new 7c53fc4 Add example for dics_source_power
new 07e09b0 Rename compute_csd to compute_epochs_csd
new 8ab0ab1 Small improvements to documentation
new 408c7b1 ENH : addressing some of denis' comments on DICS code
new 9b0c469 avoid saving files
new c5898ae ENH: improve csd shapes tests
new 617d6ec PEP8
new 106ae6a Use and improve brain plot message
new fc9567c Use instance methods x.max() instead of np.max(x)
new 4f38800 More explicit variable name
new 36bc937 Use preset limits for plotting source power
new 1ec2451 ENH CrossSpectralDensity now holds frequency
new c0ea4fd FIX file name of saved image and comment out
new 152df84 FIX file name again
new 7d64662 Rename csd_mean to csd_mean_fsum for clarity
new b3e8a11 Remove unnecessary checks for projections
new 691b5df Improve comment about regularization
new da59844 FIX tests after rebase
new bff82da FIX Variable name changed in commented out code
new b50f22d Refactor common beamformer input preparation into single function
new f4b699d Explaining summing CSD in fsum docstring
new a2d8016 Small improvements and fixes
new 7ae428c Use relative import
new 08e3b6c Use np.copy
new 05ec442 Add checks for frequency
new 1872e47 ENH Checks for projections in info
new aedec6d Raise exception on warning when testing
new f53ea99 Speed up tests
new 6570804 FIX Trivial fixes
new ee11fbe FIX Numerically stabilize frequency spacing check
new 20ada22 FIX frequencies no longer need to be a list
new 7bb38bd Move all dics-specific input processing before general
new a2aba91 Update whats_new and python_reference
new a35e9ce Merge pull request #716 from rgoj/dics-source-power
new 414a79e FIX : import order in dics
new b0e36b8 FIX: Fix broken testing
new a0e8005 FIX: don't call tight_layout of subplot adjust when axes is given to plot_evoked
new 1478f2f Merge pull request #740 from agramfort/fix_plot_evoked_axes
new e0d0776 ENH+FIX: mesh script
new 7e40744 WIP: add demo script to extract a connected functional label
new 437bee1 ENH : add connected param in stc_to_label + simplify functional label extraction (still WIP)
new d9fcf85 ENH : order labels based on max + better example
new 8723b24 TST : add test for stc.mean
new bf598f6 TST : add test for stc_to_label with connected==True
new a9038f0 ENH : simplify and better document example
new 2fd12bd pep8
new 0ab6dd6 pep8
new 17beb70 Merge pull request #730 from agramfort/add_example_functional_label
new a298072 FIX: warnings error
new f7a57c5 ENH: More explicit warning matching in tests
new 8401bef FIX: Better warning catching
new a26c517 FIX: Fix raw cov test
new 26e40f3 FIX: Final fixes
new a42725c added babyMEG sensors
new 3c52958 Merge pull request #744 from mluessi/baby_sens
new c5808d3 Merge pull request #743 from Eric89GXL/test-warnings
new 7c030b0 ENH: add plot epochs function
new 8ad1202 ENH: add bad channels in red -- bug / working?
new c5faaed ENH+FIX: big cleanup
new 8f44900 COSMITS+ENH: improve readbility + trellis function
new d89eed2 COSMITS...
new a5f580e ENH+API: fix+cleanup trellis
new 93af91a COSMITS
new d153b14 ENH: misc fixes
new 262c2da ENH: remove tests
new 715660e ENH: support default epoch_idx + settle tight_layout
new 2d19d2e Merge pull request #741 from dengemann/plot_epochs
new de26fdb FIX: Fix ICA test assumption of verbosity
new eebeff3 ENH: ICA support
new c549bb1 Merge pull request #746 from dengemann/plot_epochs
new e4d014f FIX+COSMITS+ uncomment debug stuff
new 4e2d283 FIX: Fix examples and doc for new PySurfer
new e39d5e5 Merge pull request #747 from Eric89GXL/pysurfer-fixes2
new edfa139 ENH: fiff fiducials io
new ffb12af TEST: fiducials i/o
new 6cbe66e DOC: whats_new
new 111e137 TEST use assert_equal instead of eq_
new 1b8809f Merge pull request #748 from christianmbrodbeck/trans-fidio
new ba9b469 ENH read_fiducials: use with statement
new f90f118 Merge pull request #749 from christianmbrodbeck/trans-fidio
new 6e7a4f6 STY: Refactor logging
new bed1702 STY: Consistent verbose
new 7b2e514 FIX: Failing test
new da7f2e3 STY: Clearer test label
new d0aca72 STY: Extra newline
new 3a01d98 STY: Fewer newlines
new fce4889 Merge pull request #752 from Eric89GXL/clean-logging
new b3cf363 Updated write_inverse_operator so python creates FIF structures matching C
new 4e12af1 Updated inverse function to better match C version
new 2cb785d Updated write_cov to add option to not write projection or bads in write_inverse_operator to better match C version of the function
new fbeee46 Added ability to leave out projection and bad channels when writing to fif file (so that command line output can be better replicated in python)
new 7f5edc6 Fixed typos/pep8 errors
new 62fc76d Fixed typos/pep8 errors
new 2fcc9ca Incorporate comments. Add FIFF unit names instead of hardcoding unit codes, unit handling, typos
new 4e4485c Replaced cov proj/bad tags for check in write cov
new f56a39d Updated test_inverse to include unit check
new 78e1b6c Updated test_inverse to include unit check
new 99f80d9 Typos, Updated test_inverse to include unit check
new 2d86046 Typos
new 6f279c5 ENH: fix error messages + casting issues
new 1bdd264 FIX warning import
new 48437ef FIX: unit in meter for decimated surface
new aa94f3d FIX: non-edit
new 09164c3 Merge pull request #757 from dengemann/fix_decimate_surface
new b207f3f FIX: Clearer warning for discrete source spaces
new d71bf97 ENH transforms: tools for coregistration and scaling MRIs
new 8dc8303 FIX circular import
new 36cecde ENH: use ConfigParser to store scaling info
new 59abae6 ENH coreg: single function for label scaling
new 9c5010d TEST coreg: include source space; scale with 3 parameters
new f28e9be FIX TEST scale_mri
new 1775167 FIX: requires_mne_fs_in_env testing decorator
new 9c1a791 STY: rename s_to, s_from -> subject_to, subject_from
new 055fa62 API: privatize decimate_points and is_mri_subject
new 5d1eeca ENH: is_mri_subject
new d7e5289 DOC
new bf96bc4 API: expose public functions
new 674d728 API apply_trans(): trans has to be 4x4
new 940bc7a OPT fit_point_cloud: use scipy's KDTree
new 0eddc47 API: rename fit_matched_pts -> fit_matched_points
new 8770a25 OPT apply_trans: avoid memory re-allocation
new f2c76c3 FIX als_ras_trans: make it 4x4
new 6154803 OPT fit_point_cloud: use scikits.learn BallTree
new 19a709a DOC
new d102d79 RF: avoid sklearn dependency
new 82c1629 ENH create_default_subject(): update option
new 8047dba DOC
new a80a5bf DOC/STY
new 1eeadd7 Merge pull request #758 from Eric89GXL/discrete-msg
new 5e5297e DOC: warn if sklearn not installed
new 6dbd7a2 TEST: only test scale_mri with 3 parameters (for lower test duration)
new 7cc226e Merge pull request #750 from christianmbrodbeck/trans-trans
new 876b896 FIX: import
new e637bd2 Merge pull request #759 from christianmbrodbeck/fix-import
new 56b59db ENH: add select bad channels on click
new c6ba0e9 COSMIT
new 70560a9 ENH: add block; add persistent trace drawing
new 39154c8 ENH: KIT
new a4c9f9f STY: capitalize KIT constants
new eff5a7e DOC
new a84888b STY
new aa0a24e FIX: fix lcmv when no SSP
new bf5b129 ENH: restrict sensitivity to avoid double selection
new 6eb14d3 FIX conditional
new 07b7086 Merge pull request #763 from christianmbrodbeck/trans-kit
new 1828efe DOC: add info
new 245246a Merge pull request #762 from dengemann/bad_channes_onclick
new b7c3aac Merge pull request #765 from yousrabk/fix_lcmv_beamformer_no_SSP
new 0eef588 FIX: random state not passed
new 0f942a6 FIX issue with proj
new 2a9ccf8 Merge pull request #767 from rgoj/fix-proj-issue
new 80dda7c WIP: Make source space code
new 06e2b78 WIP: Closer to working
new 79aeb1c WIP: Intermediate
new 072ec8c ENH: Better support
new 71113e7 STY: Clean a few things
new bdcdfff FIX: Addressing comments (mostly xrange)
new d32b115 WIP: (Much) better oct support
new 484d687 FIX: Fix output
new cecb71e opt _complete_surface_info
new 31bf2f0 ENH: OCT works
new 7515300 ENH: Better support
new 31d3ec1 FIX: Fix failing test for now
new dc8ed7e ENH: Add test for mismatch distance
new 61152a3 WIP: Morph subject
new 664980a ENH: Much faster
new 8ad0160 ENH: Remove morph and spacing
new 27666b4 ENH: More efficient vertex neighbors
new 25961c4 ENH: Faster source space creation (from_surf no geom)
new ea98620 STY: Add efficiency comment
new 61e5e2f ENH: Speed up _tessellate_sphere 2-3x
new 67e1264 FIX: Fix approx test
new bea3c0d FIX: Remove redundant read_morph_maps
new e3cf085 FIX: Add source space info
new 81ef15e Update whats_new.rst
new fdc97db FIX: Add setup_source_space
new 2b2e8ee - Ongoing attempt to setup a stim_server and stim_client - Making simplifications. Just one client instead of many - Fixed "[Errno 98] Address already in use"
new 53bc39f Misc. Changes
new 89335c2 Added timeout error in get_trigger() method
new 4913591 Added unit tests for TCP/IP connection of StimServer/Client
new 14deb82 added fakebrainresponse() method to RtMockClient
new 8650436 Adding example for real-time feedback.
new 32aa9bd Fixation cross + precise timer
new 7488c7e Removed weird delay by using TCP/IP from the beginning itself
new 5d0fa22 Added plot of decoding accuracy
new 0b59f82 Making the trigger values match the original stimuli trigger values
new f8c69ee Cleanup commit
new 254ce99 FIX: timing issues
new d708e9e Verbose + Unit-tests
new 0b39ae0 Rectifying and adding docstrings
new 4e3c0ab Cosmetic changes to plot + small API change
new 1a0e8cf Adding "with" statement to allow Ctrl + C and avoid "Address in use" error.
new 2abd202 FIX: Unit-test + mne.logger + mywin.close()
new 911887a No more time.sleep() in server side script required :)
new fc9f712 Cleanup commit
new 682c5b8 Fixed failing test and removed redundant thread
new 9c0c9fe Updating python_reference.rst
new 78ad6eb Addressing Martin's comments
new 96db38c Addressing Eric's comments
new 1c1e45c ENH: add trial browser to plot epochs
new fe527f6 FIX: trial count
new 16565f0 ENH: use set_data
new fb1ba61 MISC
new b080fe3 FIX: use flatten not flat for axes
new 1efa68e ENH: update example
new 6d533ce COSMITs
new af2ee81 COMSITS+PEP8
new f962325 ENH: add rejection interface
new f240e51 ENH: fix bad re-draw
new bc29fb0 ENH: memorize rejection across views
new 808961e add reject button
new 213b10c FIX: Bug where no bad channels present.
new afd9270 Merge pull request #8 from pravsripad/prav_tests
new f2b8eef ENH: add block parameter
new ec12ecb Merge pull request #772 from dengemann/improve_plot_epochs
new 67ce014 wip, not working
new 5bac997 ENH: Much faster
new 59b4944 ENH: Little bit faster, added test
new 49e973b ENH: Twice as fast by using np.einsum
new 5692673 STY: Dont need linalg
new 2678bda ENH: Add edge triangulation
new d7d64da ENH: Make edges faster, cleaner
new 2bfc44d STY: Clearer code, add dir/file checks
new 53a4771 STY: Add parallel comment
new f05d547 ENH: Add with statement
new 236f6d8 STY: Spelling
new 240676e FIX: Make pyflakes happy
new f09b118 wip subtract evoked from epochs
new 8c3151a channel handling, test, example
new 09f2414 user other event in example
new e7a3d5d cosmit
new 0c2c7f7 ENH : pimp plot_source_label_time_frequency
new 1bd4efa Merge pull request #771 from Eric89GXL/make_morph_map_speed
new a8fff74 Merge pull request #692 from mainakjas/rtfeedback
new d00e8b8 ENH: Optimizing norm calculation
new 6f0c774 FIX: Added a test for sum_squared(), changed docs and fixed PEP8
new 7a41ed8 Merge pull request #775 from mainakjas/optimize_code
new e72290b ENH: Remove deprecated functions
new 88dec5f FIX: Fix __init__
new 74eb53b ENH: More deprecation
new 30471b0 Merge pull request #780 from Eric89GXL/dep-del
new 809a0de ENH: Add volume and discrete source space creation support
new 70867c9 ENH: Discrete source space support
new 4008c08 STY: Minor fixes
new cb46515 ENH: fix layout guessing / ch names for plot proj topomap
new eff4f5a Merge pull request #782 from dengemann/fix_layout_ssp
new d205837 FIX: remove dupe
new db3bb61 ENH: Clearer input arguments
new 1149c7d FIX: Remove redundant code
new b570dcb ENH: Cleaner API without pos as str
new 3863e4d ENH: Safer testing
new c4e2849 ENH: Use float32 for slight memory savings
new b51cf4b Merge pull request #781 from Eric89GXL/vol-src
new e484174 FIX: fix Python 2.6 partial issue
new 47b21a4 Merge pull request #785 from dengemann/fix_partial
new 5979f3e FIX: encapsulate psutil
new 76a65a7 Merge pull request #787 from dengemann/drop_psutil
new 35c6c62 FIX : find clusters in 1d data with TFCE
new 6714ab2 Merge pull request #788 from trachelr/tfce-fix
new 208f0db ENH: replace pandas hack, add support for old matplotlib and current pandas master
new dc1f810 FIX: Use kernel as opposed to noise to set nSources in psd
new d9b2f25 Merge pull request #789 from dengemann/pandas_maint
new cccf54e Merge pull request #791 from bloyl/fix-for-issue-790
new 17aa333 Update setup.py
new 4345216 Merge pull request #794 from emanuele/patch-1
new 2f0920d FIX : increase test timer for buildbot in realtime
new fc4f1b8 FIX : fix coreg import mess
new cec83fb weak dependency on psutil
new eb0c8e3 FIX: Bad import
new f3ab585 FIX: Bad import
new 88b44b5 FIX psutil
new 5934754 COSMITS psutil
new d0a22f0 FIX: coreg imports
new 572dddf DOC: add comments to ANOVA code
new 4ac0f66 COSMMITS
new 4ab2b0f ENH: handle unordered events
new b3b6935 ENH: use warning instead
new 4d81b52 ENH: improve tests
new 2f071a2 COSMITS
new 617545b Merge pull request #796 from dengemann/monotonic_events
new 50eb0bd FIX: diff on empty / single events
new 8330d38 WIP ENH 5D TF Beamformer example
new 0a3f88d FIX Checking array inequality should use .any()
new 9d6de0e ENH Add plotting to t-f beamformer example
new 87f8479 Comment out overly restrictive frequency check
new 0c2d0d3 Change default number of tapers to 3
new 2dfbd45 Several changes to WIP TF Beamformer example
new f78853d Separate out tf_dics from example into a function
new 4b01c10 ENH Return stcs for frequencies instead of for time windows
new f2e999c Slightly more forgiving tmin and tmax checks
new 6a82160 ENH Time windows overlapping and different across frequencies
new 2fcef5a Several improvements to tf_dics
new 16b8f13 Using equal length time windows in example
new caa70fc Small code cleanup, remove control parameter
new 5edf86a Rename _tf_beamformer to _tf_dics
new 3d4ffe4 Alter init after renaming file
new fa706ad Small changes to example
new b0300a8 Rename example to plot_tf_dics
new 03ec52c ENH 5D time-frequency beamformer using LCMV
new f0769e5 Use list comprehension for plot cell bounds
new 6e5dd39 Several small improvements to tf_dics
new 8c042a7 Move noise CSD calculation outside of time point loop
new 3a811d8 Several small cleanups
new 103dc09 FIX Last time point not being covered by time windows
new 62cf498 Use less time steps to make example faster
new aafc2a1 Remove comments
new 77605f0 Use list comprehension
new b1d485f FIX/STY Several improvements
new a32af03 STY Small fixes
new db4e092 STY Small fixes
new eb4d534 Move new tf beamformers to _dics.py and _lcmv.py
new 2e72c69 Remove separate tf beamformer source files
new 57e3350 FIX Rejection of epochs
new 93312b5 Moving tf beamforming functions in init
new c65cf30 More explicit name for iter_filter_epochs
new 3b75373 STY Better selection of non-rejected events
new 6eb0d45 STY Use tuple unpacking for fitler parameters
new 0a32b66 Expose all Epochs parameters in generate_filtered_epochs
new e3797f8 ENH Add gray bar across frequency gap to example plot
new ec641dd comsit from agramfort
new e72e468 Documentation for tf_dics
new ed63393 Documentation for tf_lcmv
new 990c6fb FIX test after default taper number changed
new ed38454 Comment out test failing because of recently commented out code
new 91e1ce8 Baseline parameter - add to tf_dics, modify tf beamformer examples
new 0a71880 Tests for tf_dics
new a90e2e6 Source spectrogram plotting code is now a separate function
new b8807a4 FIX/STY Small fixes
new 1bbf3e9 Move generate_filtered_epochs to epochs module
new 4b96935 Move noise CSD computation out of tf_dics
new dcf84c2 WIP Improve tf_lcmv API
new 6e4e96c Small cosmetic changes
new 35b29ce Add tstep vs win_length check and test and speed up test_tf_dics
new 9d56444 Tiny improvements to tf beamformer examples
new 3a631d7 ENH Use empty room noise for tf_dics example
new a461e76 ENH Scale computed CSD to allow different time window lengths
new 236391d ENH Use empty room noise in tf_lcmv example
new 0809f7b Use n_fft parameter for CSD computation and in tf_dics
new 3edcf3c FIX us np.allclose for frequency comparison
new d5aebac FIX Add noise_csd scaling to tf_dics test
new 6e2cb35 Refactor data reading into separate function in LCMV tests
new c0208dd Add tests for _lcmv_source_power
new b7e0ef9 ENH : some clean in tf dics + tf lcmv
new fd5e284 Improve comments in tf_lcmv example
new e1ac0c5 FIX Use raw_noise to construct epochs_noise
new 3b8d51c FIX selecting epochs from epochs_noise
new 5651856 Tests for tf_lcmv
new b13d637 Use _get_data name across lcmv and dics tests
new 9779f37 FIX remove unused picks parameter from dics_source_power
new e55e30c Add docuementation for lcmv_source_power
new 3a74529 Add check for presense of raw in epochs.raw
new bf158d3 Add tests for tf_lcmv input checks
new 133068b Remove unused win_length variable
new 5c21736 Use filtered raw for tf_lcmv tests
new dbb1459 Improve comments
new 6bedc32 Add CSD scaling by number of samples and n_fft tests
new ea2d2a0 Remove debugging print from test
new 3af6103 Do noise and data CSD scaling by n_fft inside tf_dics
new 1f46b52 FIX Use raw_noise for epochs_noise
new 5e6c475 Use picks and change reg parameter
new 106556b Improve comments on preloading and bad epoch rejection
new d5e624a Scale CSD by n_fft in tf_dics without special function in CSD class
new ea4532f Speed up tf-beamformer examples by using a selection of magnetometers
new 12dd012 Setting regularization parameters for tf_lcmv example
new 823984c FIX regularization for data covariance
new 3d5bfe2 Skip every other source spectrogram time label
new 6766a8e Small changes and remove old/done TODOs
new 6587b48 Make colorbar optional in plot_source_spectrogram
new bc463af Disallow max-power orientation in tf beamforming
new 0799c8a Update what's new
new 99ccbcd Unnecessary import left after rebasing
new a92299e Merge pull request #742 from rgoj/5d-tf-beamformer
new 4418c39 FIX self-morph, vertex order
new e06394e OPT
new 0e1f873 TEST: plot_evoked_topomap() for all channel typs
new 60fc608 FIX viz._prepare_topo_plot()
new c633d97 Merge pull request #801 from christianmbrodbeck/fix-plot-topo
new b958028 FIX: Fix error message
new a43a9f3 FIX: filter defaults for ICA raws
new ebcc6bc ENH: add crash for non-understood raw objects
new dee512c Merge pull request #805 from dengemann/ica_filter
new 85df6be COSMMIT
new 70654cf FIX RawKIT: add .proj attribute
new 8c7d6c3 Merge pull request #806 from christianmbrodbeck/fix-kit
new d47396b ENH: expose simulation API
new ae35d5e Merge pull request #807 from dengemann/misc07
new 71c2cb6 ENH/DOC: improve getting started page
new 91005a5 FIX: gen_rst.py
new 4d9459a ENH: address discussion
new 31c8579 Merge pull request #808 from dengemann/misc07
new 34e01f4 FIX: f-test examples
new 93d7938 COSMITS
new ff979b5 FIX layout example
new 0b7dc9e COSMITS
new 652fd09 Merge pull request #811 from dengemann/misc07
new 52d400e FIX: utf-8 error preventing sphinx build
new 9cd9580 ENH: add subtract_evoked option to tf_lcmv
new b75a83d Merge pull request #799 from mluessi/fix_self_morph
new 7a793f8 ENH: add subtract_evoked option to tf_lcmv
new a884996 ENH: new preprocessing / FFT tutorial example
new f470363 ENH: refactor example + address discussion
new 13ca66a ENH: fixes + addresses discussion
new 0971877 ENH: add compute_epochs_pds + refactor example
new db766f9 COSMITS
new 43d167c FIX debugging changes
new 552d1be update whats new
new 1db8004 update reference
new a2f9e92 ENH: address discussion
new 7afa8d8 ENH: add parallel + address discussion
new 658dd88 COSMITS/DOC
new 31e301d ENH: address discussion
new 7332410 Merge pull request #604 from dengemann/fft_spectra
new 3bd5956 ENH: add subtract_evoked option to tf_lcmv
new 39761fa ENH: add subtract_evoked option to tf_dics
new 1d9d667 ENH: adding rereference eeg channels function to raw.py and implementing test function. Implemented suggestions from Eric and Denis (pull request #795)
new 374a769 changed rereference function from a method to a function in mne/fiff/raw.py. Implemented suggested changes
new aeb0d17 changed instances of .fiff.Raw to Raw in beginning comments. added test for to ensure that reference channels are entered as a list, even if there is only one channel
new c425aaa added copy parameter to allow the option to modify in place
new e844033 implemented test for copy=False in test_raw.py, simplified copy case in raw.py
new ef7cc92 pep8 syntax corrections to test_raw.py
new 39347f8 changed assert(raw == reref) to assert_true(raw is reref)
new dc1f5da removed redundant lines from copy=True/False section
new b7a1d43 ENH : use isinstance
new 0f3cbf2 FIX: Add check for EEG average reference
new 56bae2e FIX: Fixes
new d5d4b77 FIX: Fix vertex ordering on label read
new 92b633c FIX: Fix many warnings
new e0339ba ENH: Cleaner code, fix warning
new c2572e1 FIX: Minor warning fix
new b943de5 Merge pull request #813 from Eric89GXL/fix-avg-eeg
new f1bdb91 FIX : MxNE broken test due to API change in sklearn
new 3a96dc4 ENH: expose more KIT related functions
new 8954ce8 ENH: allow KIT ELP file with > 8 points
new 1b622bb DOC
new 01351ba WIP: add test of tf_dics with subtract_evoked
new 2d9502d WIP: add test of tf_tcmv with subtract_evoked
new 6255041 WIP: add test of tf_dics with subtract_evoked
new fb42789 WIP: add test of tf_dics with subtract_evoked
new c417867 FIX : avoid division by 0
new 31ac786 Merge branch 'pr/814'
new 547d898 ENH: parc from labels
new f87dc7b FIX: avoid division by 0
new b51a7fb cosmit
new f5630d0 cosmetics
new 8237ddd Merge pull request #818 from mluessi/parc_from_labels
new b634019 remove trailing spaces
new d8a82b7 Merge pull request #817 from christianmbrodbeck/expose-kit
new f93b209 Merge pull request #812 from adykstra/subtract_evoked_from_epochs_tf_lcmv
new dcc7872 FIX: Check nibabel version
new 50a5d19 ENH: Add raw.plot_psds()
new 1cd5028 STY: Better message
new 841a505 Merge pull request #821 from Eric89GXL/vs-nib-fix
new acdc2a7 FIX: Failing test for fit_transform()
new 972033e Merge pull request #823 from mainakjas/csp_test_fix
new 8060a85 STY: Clearer matplotlib
new 67ff552 STY: Different plt
new 577cdc0 Merge pull request #822 from Eric89GXL/raw_plot_psds
new b3cc069 FIX: Update python_reference
new ac1d2fd FIX: Update whats_new
new 3a93b5d ENH: add support for Anaconda
new 46591b2 COSMMITS
new 2e71187 COSMMITS2
new 8cf0a87 COSMMITS3
new e1572ab ENH: update requiremnts
new 83de456 ENH: Add support for multiple clients
new 0f21c75 STY: line breaks
new fccda15 Merge pull request #824 from dengemann/misc07
new dd09d99 RF: mne.transforms and mne.coreg into top level modules
new b493db7 STY
new 8cc1a14 FIX: Fix kit import
new d576b39 WIP ENH: Add source-space distances
new ee54336 ENH: Better style
new c7977f8 ENH: Use scipy
new 26ca310 ENH: Add to __init__.py
new 5f0b456 ENH: Add test, cleanup
new b053a34 ENH: Add version checks
new b72b9c2 ENH: Works with scipy limit
new 0d6ecbd ENH: Cleaner
new 25425c5 FIX: Fix timings
new bd46517 FIX: Update whats_new and reference
new b4e34b5 ENH: add force option to make surfaces
new 57e7128 FIX: Fix partial
new 0eaf5fb ENH: improve argument handling
new bdf8485 Merge pull request #830 from dengemann/misc07
new f16482d STY: Cosmits
new 40b5e76 Merge pull request #802 from Eric89GXL/src-dists
new 946f438 ENH: MEG and EEG run, but incorrectly
new 67c4f7c ENH: Cleanup after rebase
new 0a322b9 FIX: Fix writing
new 5e73ebf FIX: MEG and EEG forwards working
new 7352792 ENH: MEG, EEG forward calculation correct + tests
new 86feade FIX: Fix and test trans support
new d2c17a0 ENH: Speed up forward, add example
new d66f630 ENH: Slightly saner comp
new 59cfad5 FIX: Fix morph_map regression
new 1fda5c7 STY: Cleaner API change
new f7176e0 STY: Minor fix
new dfd7708 ENH: Refactor read_forward_solution, add convert_forward_solution
new 439c888 STY: Cleaner
new 9d962be STY: Clearer docstring
new 27a37a6 STY: Clearer naming and code locations
new f74b298 ENH: Clean up examples and minor fixes
new d088ddb ENH+STY: Cleaner code
new 65515d5 ENH: Compensation works
new 8a137b6 STY: No plural on examples
new 0f2d669 FIX: Fix subjects_dir bug
new e4e7c80 ENH: Add debugging information
new 24809e9 FIX: Fix debug
new 55e8da7 ENH: Clean up _create_eeg_el
new 04f8905 STY: Cleanup by removing unnecessary fields
new 58f9801 ENH: Remove debugging code
new 719062f STY: Cleanup comment
new 54d94ab ENH+STY: Speed up bound checking, cleanup code
new 4b92947 ENH: Address comments, clearer code, get_machid()
new cfd0daf FIX: Minor fixes
new 5126987 STY: Cleanup info defs
new 06fd9f1 FIX: Cleaner indexing
new 6e6407e FIX: Dont need subject name
new a404f2f STY: Better name for lin field coeffs
new e752745 ENH+FIX: Cleaner, fix example
new 7b57c0f FIX: Fix source space orientation
new 62cf0c9 STY: Minor cleanup
new 8da2298 FIX: Rebase fixes
new e707c34 STY: Cosmits
new c2d227f ENH: Better MAC handling
new 6f20cbe FIX: Fix handling
new 4c71014 ENH: mac address pythonic
new 63250f5 FIX: sample dataset data_path in cases where the data has been removed
new 8c5d1ca Merge pull request #776 from Eric89GXL/do_forward_solution
new ab7a661 Merge pull request #833 from christianmbrodbeck/sample-data_path
new 17efe90 STY: pyplot
new ddc6231 FIX: Fix mne_browse_raw
new fce0a71 FIX: Fix raw titles
new 74cc02b STY: Comment
new cc4dd3a Merge pull request #835 from Eric89GXL/fix-raw-plot
new 2159e21 Merge pull request #834 from Eric89GXL/pyplotting
new 15ec0df STY: Cleaner imports
new a4dd289 Merge pull request #837 from Eric89GXL/imports
new a406ba8 ENH: get rid of various viz warnings
new 6d9223d COSMITS
new 8b641e6 COSMITS2
new 3034d3e COSMITS
new aa2d5bc Merge pull request #838 from dengemann/fix_mpl
new 6d8cd07 ENH: Allow nosetests without sample dataset
new 4a6d581 FIX: Fix warning during tests (LCMV)
new ed5956d ENH: Add "make test-no-sample" command
new ecc2164 STY: Rename avoid_download
new 5ab669a Merge pull request #839 from Eric89GXL/deb-pack
new 3f825c6 FIX: Update whats_new with debian compatibility
new abc0629 FIX: Fix packaging of forward
new 455cd1a FIX: Fix integer arguments and raw._times
new 9bb2ba7 FIX: Revert unnecessary change
new cf087b7 FIX: vertex ordering when combining labels
new 943ab63 Merge pull request #841 from adykstra/fix_label_vertex_ordering
new 678f6a9 Merge pull request #840 from Eric89GXL/resamp-fix
new 3053353 ENH: return stc when applying stc.transform_data
new 2114334 STY
new 8a3441e ENH+FIX: Add "auto" qrs_threshold, cleanup filtering
new 41d177e STY: Add whats_new
new 9eb8b95 FIX: Fix eeg_avg corner case
new b6d2346 STY: Various cleanups
new 5b3d2ee ENH: add transform method to SourceEstimate class
new a26f94c FIX: pick inconsitencies
new 88ecfed ENH: Increase coverage without sample dataset
new 8dfb7ab FIX: Packaging error
new 28295d0 FIX: Add noise label files
new 76297ff Merge pull request #846 from Eric89GXL/non-sample-tests
new 8bb1385 Merge pull request #844 from Eric89GXL/auto-qrs
new ef53ac0 WIP: add transform method to SourceEstimate class
new c08ea45 MISC: fixes
new 93ce186 ENH: add travis support
new bdae7ab ENH: More packages
new 4099003 Merge pull request #847 from dengemann/travis
new 3e6d0fa ENH: more wisdom
new 1bd18be Merge pull request #848 from dengemann/travis
new 0d13100 FIX: .travis.yml
new 1137f17 FIX: dependencies
new c650911 FIX: nibabel
new 855ba64 ENH: add sklearn
new 2a2c9ec ENH: more fixes
new 1db0aeb ENH: try more recent sklearn
new 05854f6 TRY: fix make
new 0fd5219 ENH: force serial
new 8da480b COSMMITS
new 98d6637 COSMMITS
new 0b81877 Update travis.yml
new 6d564c8 Fix travis.yml
new cdb1710 ENH: right env
new 5374934 ENH: more explicit
new cc78f9d FIX: more fixes
new d59ab30 Merge pull request #849 from dengemann/master
new 54e70c6 ENH: add Travis image
new 7bc07b6 Merge pull request #850 from dengemann/master
new 3168150 MV: add get_neuromag_trans to the coreg module
new fae64a6 RENAME
new 68dd759 FIX
new 0ce2c5c WIP: add transform method to SourceEstimate class
new f846524 Merge pull request #852 from t3on/tb-coreg
new 8f4d219 FIX: NameError in mne/coreg linalg.norm
new 1d4bdfb ENH: spm face data set
new 33bea3a ENH: spm face data set ++
new c0315fc FIX : stuff here in there in dowload of datasets
new 15a9112 ENH : add spm demo script
new 4bccaec add denis
new 1f340ac ENH: better unpacking
new c9ba8fd COSMSITS
new 499c37d FIX: folder_name mismatch
new 303eb77 FIX/ENH: misc + add ICA
new 8ba7e10 update script
new 90e06ad CLEANUP
new f8d3b92 ENH: pip install sklearn
new cfbaa50 ENH: pip install sklearn 2
new 3861a2a Merge pull request #851 from dengemann/spm-data
new a29a1cf FIX : spm_face missing from setup.py
new 503e428 WIP: add transform method to SourceEstimate class
new ca5cfbb Add tests for multiclient setup
new c865d35 FIX read_fiducials(): set points' coord_frame
new 45ddb99 WIP: test SourceEstimate transform method
new 8deece2 FIX fiducials IO TEST
new e0abcf7 ENH write_fiducials: catch fiducials with inconsistent coord_frame entries
new efc3ef8 STY: Use more consistent form of variable numclients -> n_clients
new 3758300 WIP: test SourceEstimate transform method
new 125dc3e WIP: test SourceEstimate transform method
new 5722814 FIX: CSP fit bug fixed!
new 573e0b6 pep8 fixed
new deae602 Merge pull request #857 from trachelr/csp-fix
new 7a810d8 Merge pull request #842 from adykstra/return_stc_data_transform
new 0ce89f2 Merge pull request #856 from christianmbrodbeck/fid_io
new 5c8fc50 ENH: make spacing parameter consistent between functions
new a37baa8 DOC
new 56226f6 DOC
new 693518f Merge pull request #861 from christianmbrodbeck/spacing-arg
new ac49bed FIX : missing coma
new a22d86d FIX : typo in sample.py
new 1efb173 FIX : more typos in datasets
new d800d11 STY ENH: Adding timeout and PEP8 changes
new c142d07 missing init
new 997c8e9 fix for debian (will break pipy)
new 8c945fd revert change of manifest
new 400f9ce ENH: doc updates no.1
new f101615 COSMMITS
new e3f8ed5 QT backend
new 2edc1aa STY: redundant args in stc.transform() and stc.transform_data()
new 5052eb6 ENH: address discussion
new cd377b9 COSMITS
new 9dc3a37 Merge pull request #863 from dengemann/update_tutorial
new d25ecb0 ENH : add machinery to build manpages
new 1b634e0 refactor commands/scripts to expose only one named mne
new 8518352 using Popen
new 81c87a0 Merge pull request #866 from agramfort/mne_cmds
new 0aba378 ENH: use straight subprocess.call instead of 'handling' stout/stderr
new 40b7eb1 DOC: adjusting usage examples to use 'mne command' instead of 'mne_command.py'
new 2e5463c ENH: centralize definition of OptionParser to deduce command name and set version, etc fields
new eff3885 finish the cleanup from @yarikoptic in mne_* commands
new 6fc4be0 remove tight in example
new bafba6d FIX: sample datasets download target folder
new 6f3f842 Merge pull request #874 from christianmbrodbeck/fix-dl
new 371bed3 FIX: realpath to avoid symlink error
new f721a05 Merge pull request #826 from mainakjas/rt_multiclient
new ec3e8dc ENH: add colorbar arg to stc.plot()
new e0ca1a0 ENH: add colorbar arg to stc.plot()
new 17a3026 Merge pull request #876 from adykstra/add_colorbar_arg_to_stc_plot
new 54a481e WIP: first pass through BDF converter
new 3428ad5 ENH: read edf+ reader
new c814836 FIX: 2.6 compatibility COSMITS
new b9c1a6d FIX: stim channel problem with BDF
new 239597f ADD: stim_channel kwarg
new f81f050 ENH: API
new c903123 COSMITS: merged params dict with info dict
new 23df0cb UPDATE
new 0f51398 ADD: test for edf
new af6ef86 ENH : more consistent measurement info between edf + fif (to be fixed cal/range in chs)
new 2cf1f90 UPDATE cal and range, COSMITS: pep8 compliant
new e5b13b9 ADD: edf compatibility UPDATE: info dict: cal, range, unit_mul
new d0d668d WIP: first pass through BDF converter
new 1d7f098 ADD: mne.fiff.edf to setup.py; COSMITS: reorder kwargs docstrings
new 6c9e882 FIX: error message with unspecified filtering, UPDATE: n_eeg is default
new dc2668b UPDATE: remove unnecessary padding.
new 4895094 tiny cleanup
new c4f3ce6 update manifest.in
new 6db852a update what's new
new f27fe7b fix: add *.lay files
new b9c499d Merge pull request #880 from mluessi/fix_add_lay
new 97143c5 FIX: eplained variance ICA
new b86cbdb ENH: Run Travis after install
new 1f44896 move env var
new d6325d6 env one line
new e10295f Merge pull request #881 from mluessi/enh_test_after_install
new bd0a202 FIX: coil type for reference channel
new 2e179f7 Merge pull request #883 from t3on/tb-KIT-fix
new fc8a8de FIX: Fix KIT forward solution calculation
new f08c3e9 FIX: Fix tests
new 537fe9d ENH: add prepare_bem_model wrapper
new 2921aa8 ENH: extract rotation parameters from transformation matrix
new d9aae26 ENH prepare_bem_model: add sol option (output filename)
new 76c9ef2 FIX: Fix tests
new 871117f FIX: Fix silly copy
new bfb4009 ENH: Clearer error and explanation
new 7c4a397 Merge pull request #882 from Eric89GXL/fwd-kit-fix
new 73a0db0 FIX: setup_volume_source_space arg
new 35397b9 ADD: init file for tests
new a57327a ENH scale_mri: allow scaling source spaces separately
new 4ff6c5f Merge pull request #885 from christianmbrodbeck/rotation
new f9a974d RM: content is unnecessary, empty file is sufficient
new b4e8679 Merge pull request #891 from christianmbrodbeck/coreg
new 7a18e78 FIX: Added decoding and realtime modules
new cbf0db3 Merge pull request #892 from mainakjas/fix_autocomplete
new 708ee0e Merge pull request #889 from t3on/tb-init_ADD
new fcb4c0f Merge pull request #888 from christianmbrodbeck/fix-vol-src
new a2beef7 STY/DOC prepare_bem_model: sol_fname parameter
new 9c6dcfb Merge pull request #884 from christianmbrodbeck/prepare_bem_model
new c543bc4 FIX: Fix mri handling
new 0fa2e8d FIX: Typo
new ca541b0 Merge pull request #893 from Eric89GXL/vol-mri-fix
new 93accaa FIX: Fix error wording.
new 50c51c4 FIX: Fix docstring wording.
new f409b71 Ohloh widget for website
new 12811e4 Merge pull request #895 from mluessi/ohloh
new 923cf40 FIX: take into account that record length can be less than 1s.
new fb7eeb8 ENH: add GUIs
new d7e1ad5 STY
new 7766fec FIX fiducials GUI: initial view
new c27aa00 FIX fiducials GUI: “save” button
new 79dae4e GUI: ENH view options layout
new dd17e59 GUI: axes labels for Denis
new abfb9b3 FIX: read_segment when record_length is less than 1s.
new 672d143 Merge pull request #896 from t3on/edf2fiff-FIX
new 3e652da FIX: keep MEG ref
new 998c17e FIX: don't import mne in setup.py
new 37090e5 ADD: annot file parser
new a77cf49 ADD: support for annotation file
new a853e8a FIX: example subjects_dir
new cf10ff4 DOC: quotes in attribute names
new bff564e Merge pull request #898 from mluessi/fix_setup_import_mne
new 8bf262f COSMITS
new 7f2d90d Merge pull request #899 from t3on/edf-annot
new 52edca1 ADD preliminary reader
new 6ebe48d ADD: testing suite
new 0500972 FIX: make Travis happy
new d2fb451 ENH: added support for different data orientations and binary formats
new 30ebc15 FIX: handles filtering settings
new a3dd288 ENH: check whether marker file contains events
new 4e0c90d ADD brainvision test data to manifest
new 364367a FIX: header parsing
new e571d27 COSMITS: add docstring,
new b3471ba COSMITS: Renaming
new 4768da2 FIX: Minor error
new 6dab4e7 ADD: elp file to improve coverage FIX eeg_loc
new 6282fe3 update what's new
new aa0981a Merge pull request #901 from christianmbrodbeck/fix
new 8fa0518 set ref_meg in pick_types()
new 9b1696b layout and ICA fixes
new 749944e revert reverted viz changes
new 078c59f revert reverted viz changes 2
new 75a47d5 Merge pull request #6 from dengemann/fix_ctf_comp
new e853e17 ref_meg='auto'
new 07aa67c ENH: pyplot internals
new c203f88 DOC: %pylab inline
new 288973a revert changes
new 9ca38e4 COSMITS
new f23b614 ENH : new make html-noplot for faster doc build + update logo with all logos
new 37015ef try explicit backend handling
new 518c4ba Merge pull request #897 from mluessi/fix_ctf_comp
new 191ea0f Merge pull request #902 from agramfort/doc_update
new 4d734a6 Merge pull request #906 from dengemann/ipy_notebook_support
new be92637 FIX: adjust comp grade in info
new 99b7a77 cleanup
new e53cd3f comp tests
new e606633 rename “create fsaverage” button
new 4ea8f06 FIX bug when selecting source for source spectrograms
new 12b40d9 Merge pull request #908 from rgoj/fix-source-spectrogram-source-index
new f874e1c still not working..
new eb9734b FIX: calibration bug when saving comp
new bd15595 FIX: automatically lock fiducials when fiducials file is found
new ece7fa8 ENH : raise meaningful errro when pysurfer is too old
new f139bbb fixes, cosmit
new 6aa7254 Merge pull request #907 from mluessi/fix_comp_handling
new 19b538f ENH kit2fiff_gui: clear_all button
new 0b6074b FIX: Memory issue in stc generator
new 9c32bbc performance warning
new a50cb91 Merge pull request #913 from mluessi/fix_stc_mem
new 49e2abc ENH: Better test coverage for utils and fixes
new d278fe0 ENH: Better coverage
new 8a8840b FIX: Fix makefile
new d982dac FIX epochs picks
new 9889217 ENH: read all epochs and keep data
new 53211e5 Merge pull request #15 from dengemann/better-test
new c68ec95 Merge pull request #910 from Eric89GXL/better-test
new b9b36cd FIX: Better IIR handling
new 7dab6cc ENH: Add mouse-click emulation to tests
new 2f75f41 ENH: Better test
new 259e43a FIX: Fix for old mpl
new c8f0d1c Merge pull request #914 from Eric89GXL/iir-fix
new 0877c7e first pass
new 6076ebc revert unintended example changes
new 88ecc85 FIX: Fix string
new 9e2ed27 Merge pull request #916 from Eric89GXL/mouse-test
new 86c526b really deprecate find_info + add test
new 086e8db remove warnings from viz tests
new 3ff9050 improve message
new 56120cb COSMIT
new c6e5916 remove deepcopy
new f1be3e7 improve API
new 7efa004 improve tests
new 957cf2c extend options and tests
new 1e397f3 update examples
new 7590953 improve dox
new 5546c96 more tests
new 2f35fe6 FIX: old matplotlib
new d161d4d better figsize
new a0c45ea deal with annoying dataset warnings
new 4fe2908 Merge pull request #918 from dengemann/fix-warnings
new dcfe132 STY: redundant args in stc.transform() and stc.transform_data()
new 7c9effc TST : cleaner test skip when statsmodels in not there
new 4432804 robustify test_fetch_file
new 3e851f8 test selective cleaning
new 61f682c update whats new
new e540b9f COSMITS
new 6377e15 add EEG support
new df81006 polish cleaning of layout
new f48b967 fix tfr
new 6495d76 STY: redundant args in stc.transform() and stc.transform_data()
new 73aa337 improve CTF
new 9cb762d Merge pull request #917 from dengemann/clean-layout
new ffd1654 fix mpl plotting
new 9697e95 more fixes and updates
new 794a1a5 revert silly changes
new 3f81f53 another attempt
new 5db4fd9 success
new db858f8 even simpler
new 2105bf0 COSMITS
new cb11d07 final fix
new 3192ab7 whats new
new 54e5d6c Fix build issues
new 441149d catch warnings
new 48fedb0 WIP kit2fif_gui: initial zoom
new 39d2f3c Merge pull request #921 from dengemann/mpl_fixes
new c4148f7 cosmit
new 597160c GUI coreg_gui layout: move locking fiducials into fiducials border
new fe0b97b very evil ICA bug
new 8e6b608 STY: redundant args in stc.transform() and stc.transform_data()
new df0c0be STY: redundant args in stc.transform() and stc.transform_data()
new 749b915 FIX: surf_ori is True for fixed fwd
new af28084 Viz minor bug fix and some docs fixes.
new a733ce0 Merge pull request #925 from pravsripad/viz_bug_fix_doc_fixes
new d415e53 Merge pull request #864 from adykstra/remove_redundant_args_from_stc_transform
new 11a33e6 test
new 8c806a3 ENH: better catches for EEG layout
new 767de2d cosmit
new 2cf7e66 cosmit2
new 6140011 Merge pull request #927 from dengemann/better-catch-layout
new e27ee80 DOC
new af27a9b Merge pull request #924 from mluessi/fix_fixed_surf_ori
new c079680 Merge pull request #766 from christianmbrodbeck/trans-gui
new 5e2843a missing init in commands module
new f9a3ad2 DOC/API closes #915
new 262d2a2 fix default in forward
new 5dfa5f6 FIX: Throw exception if >2GB
new 57386a6 Merge pull request #928 from mluessi/fix_file_size_limit
new a734055 update python tutorial images
new 33cc520 update mailmap
new e437079 website cosmits
new 523bc43 update python ref
new 1593ac2 cosmit
new a6e7fcf cosmit
new a1d3872 more cosmits + missing whats new
new 4d1c3a4 more cosmits ++
new e9ad212 cosmit
new cfdb1da bump version number
new 477d8f9 missing commit number
new 1bdfc22 move to 0.8 cycle
new b771969 FIX megsim path resolution
new 0a8f89c DOC: FIX typo in slideshare links
new 997eca9 Added funding information
new 884ca21 Website logo update
new ebe8633 Merge pull request #929 from mluessi/fix_logo
new 38f3b92 FIX: Fix regexp for floats
new cee28c6 FIX: Fix regexp for floats, modifying biosemi.hpts to serve as test
new 481cced FIX: Fix regexp for floats, adding test
new 4ba0480 FIX: Fix regexp for floats, improving test
new c2c5191 Merge pull request #932 from haribharadwaj/edf_hpts_regexp_fix
new 86d202c fix sys.executable call
new 5c2aaa6 add a few script calls
new 2af2391 improve test
new 5baf874 fix expression
new d20807b fix expression 2
new 4b8f66a Merge pull request #935 from dengemann/test-scripts
new 00409c7 STY coreg: use fname patterns
new 2bce38b STY coreg_gui: move reset into model
new 7d24922 FIX RawSource (coreg_gui): reset omitted points when raw file changes
new e21fd3c FIX: MANIFEST.in
new 9b9bde3 Merge pull request #939 from christianmbrodbeck/fix-manifest
new 85ab37e TEST coreg_gui: switching raw with point omission
new 8da0284 DOC
new 536abc5 Doc: note on working with downsampled raw files
new b943ba0 e -> events in docstring
new 19813e6 Added >>> before code example
new 776a0ce Merge pull request #938 from christianmbrodbeck/fix-gui
new 3dcabf3 ln -sf
new 9caa5eb ENH: contributing
new 9fdf100 FIX: contributing
new b864e14 FIX2: contributing
new 6348c12 FIX Epochs: raise error if baseline is outside data
new 13f0f74 FIX
new ff4d820 FIX : avoid division by zero warning + integer division
new 84cb404 Replacing deprecated commands module
new 867ca87 Replacing deprecated commands module, v2
new e188881 Making changes more pythonic.
new 61df14a Merge pull request #951 from pravsripad/replace_commands_module
new 6e9a47f Add recommended workflow, delete code example
new a54a66c Simpler docstring warning for downsampled data
new dfdc145 read_events: note on downsampled raw files
new dafee43 Merge branch 'docstring' of https://github.com/TalLinzen/mne-python into docstring
new b314e19 drop_epochs: Check indices are not out of bounds
new c31441e Merge pull request #942 from TalLinzen/docstring
new 9c71665 ENH: return individual figures in plot_cov
new 70f27de Merge pull request #957 from dengemann/cov-plot
new e227642 expose API in example
new 9bb80fe Merge pull request #958 from dengemann/cov-plot
new 47644e5 Merge pull request #959 from TalLinzen/drop_epochs_out_of_bounds
new 6e8db4d ENH : add time generalization decoding
new a00216a delete the savefig
new 0ca610e Merge pull request #953 from agramfort/time_gen
new f3aafb9 ENH/FIX: add missing EEG tagging
new b200336 Improve verbose using decorator module
new b1a638c FIX: Catching ImportError on decorator
new b68b285 Making it marginally more readable
new d7b31e2 Couple of extra comments for clarity
new eed45ff Changes to conform to PEP8
new d287246 Incorporating decorator module code inline (BSD licensed)
new 7be639d move decorator code to externals folder
new 2ac025e udpate setup.py
new 618e0d2 FIX gui: import when traits not installed
new 80ccf84 FIX: kit2fiff_gui handler
new 036190a FIX kit2fiff_gui: handle ELP with more than 5 points
new e22acd6 ENH kit2fiff: more checks for correct input
new ac1418d ENH guis: check mayavi version before opening GUI
new 2ee21ef API: move check_version -> mne.utils
new d7d0334 ADD: optionality for second marker function
new d702259 PEP8 and remove np.testing
new 776e54f added default attributes to RawEDF. added append test for RawEDF.
new c3eb264 ENH add averager to the kit class, add support for multiple markers within mrk
new b274036 FIX remove average_mrks
new 77c5bbc had to add brackets to some attributes in order to append a list of instances
new 6f0d020 Merge pull request #970 from leggitta/edf_append_fix
new f311096 FIX : avoid warning in test_time_gen.py
new 3418ed4 wip py3k
new 2df5b0a add six
new bcc98ac fix init
new 99cca60 update decorator for python 3
new d3e6fdc FIX: Fix decorator
new 092105c FIX: Use cleaner check than map using builtin
new 01ae5bc FIX: Many fixes for py3k
new e2e80e7 FIX : catch warning in time gen
new 0397558 ADD test of >2 mrks
new 03e3417 FIX read_raw_kit args, docstring
new 7584ab6 FIX arg order
new 72bea5d ENH: website dev header
new eae54c9 adjust upload location
new 66fcead Merge pull request #977 from mluessi/website_dev_links
new 3dd2055 Merge pull request #969 from t3on/tb-ENH-kit
new bf4692b ENH: Better method for getting user home folder
new 57d091c Merge pull request #980 from bburan-galenea/bburan-galenea/env-var-fix
new 0ca2f1b Travis configured for Py3.3
new f69af34 WIP: Better py3k support
new 6a486f2 ENH: Better write support
new b3f4028 Fixes for brainvision and bti test cases
new 6e32a93 FIX: Fix some writes
new e052709 FIX: Fix warnings catch
new 5d7c64f FIX: Fix fix
new 13f69bd FIX: Fix some writes
new 0160f61 FIX: Fix Py3 STC operators
new d633bc0 FIX: Fix reads
new 59d50df STY: PEP8
new 2d26d5c FIX: Fix divide
new 53533d8 FIX: Fix viz
new 4d392d9 FIX: Fix raw
new 86249a1 FIX: Fix raw copy
new 2025658 FIX: Fix cov and utils
new a9fe6b6 FIX: Fix parc
new 45324d8 FIX: Travis
new 6b2ee03 FIX: Travis v2
new 754fb8c FIX: Travis v3
new 5df672b FIX: Travis v4
new 97b79ee FIX: Better raw support
new 012135b FIX: Fix EDF and KIT
new 0b84c3a FIX: Fix fwd and prints
new 1a07d5c FIX: Many fixes
new bbb8c38 FIX: Fix KIT and time generalization
new 8821e44 FIX: Travis v5
new 605a7fb FIX: Fix examples
new 81deb19 FIX: Travis v6
new 3509823 FIX: Fix RT
new 80b752c FIX: Fix KIT
new 12bd416 FIX: Travis v6
new 1881e64 FIX: Travis v7
new cfb6842 FIX: Travis v7
new 666c2f9 FIX: Travis v8
new 4029c31 FIX: Travis v9
new dd483bf FIX: Travis v9
new 00b656b FIX: Travis v10
new 91c0cbd FIX: Travis v11
new b586a4e FIX: Travis v12
new caa3c37 FIX: Travis v13
new 6083306 FIX: Travis v14
new ab0f942 FIX: Fix string handling in ICA
new 54ceac1 FIX: Fix string handling in ICA, better
new 7051c7f FIX: Travis v15
new a0d05de FIX: Nest matplotlib import
new faee633 FIX: Travis v16
new 61650e5 FIX: Travis v17
new 80c50ce FIX: Travis v18
new 5524283 FIX: Travis v18
new 75d0373 FIX: Travis v20
new 506cbd1 FIX: Travis v21
new 1282ebd FIX: Travis v22
new 165a5ed FIX: Minor fixes
new 6c996ba FIX: Type
new 2da059a FIX: Travis v23
new 842089b FIX: Fix unicodes, warning check, resample
new c85fe21 FIX: Used integer division when assigning to quanities, for Py3
new 200f9be STY: Fix test name
new aea24c4 FIX: Fix np.fromfile bug better
new 401b0cd Merge pull request #981 from Eric89GXL/fromfile-fix
new 07b6f1d ENH: add peak getting API
new 5a7fb1a FIXES + adde tests
new 64254ac whats new
new 95a9f99 revert unintended change
new fddc2a6 improve API and tests
new 854d06b cosmit
new 9f90a00 improve doc
new 3ce8d3d fix vol source estimate API
new 0ffd640 improve tests, better erros, fixes
new 7be7ce0 cosmits
new c863398 Merge pull request #984 from dengemann/find_evoked_peak
new 59dbe05 Update evoked.py
new 2ecfd63 Verify comment is not None when checking its length
new c1c9347 Merge pull request #988 from TalLinzen/evoked_none_comment
new ce6b813 Improve warning for out-of-data dataset
new 28c8240 fix explained variance
new e9e385d cosmit
new ff12df9 drop recentering
new 38876e5 Merge pull request #992 from dengemann/fix_epxlained_variance
new 5e56882 ENH/API/MAIN radically improve sensor-topo API
new a7e252a py3k fix
new 41d2e31 cosmits
new bbfe343 ENH: address discussion
new dcc7cef Not up-to-date sample data warning: Cosmetic changes
new c3ff5d0 Merge pull request #991 from TalLinzen/dataset_warning
new 4e78626 fix PEP
new 2e4fb8d Merge pull request #990 from dengemann/improve-topo
new 566cb65 Add trial ID and improve drop_epochs
new 9e68121 Add trial ID and improve drop_epochs: cosmetics
new 6e5792d Add trial ID and improve drop_epochs: cosmetics + fix
new c31a2f6 Add trial ID and improve drop_epochs: cosmetics
new fce5352 Simplified list comprehension using np.in1d
new 50c89e8 Merge branch 'tal' into trial_id (np.in1d instead of mapping)
new 7af66f1 FIX issue with ICA plotting
new 2185d1e Use deepcopy for subsets' drop_log
new 78e4ac6 Add trial_id and drop_log in read_epochs
new 45b0bf4 add proper test
new 880faac add fif IO for epochs bookkeeping
new 9407c4d Merge pull request #2 from dengemann/trial_id
new fdb91a4 API : simplify drop_log + add selection attribute in Epochs (avoid relative references)
new ba45d4b FIX : fixing tests (almost done)
new c2e8956 FIX : first round of comments
new 30a81e9 FIX : make tests work
new 29ded6f XXX in docstring
new ba11381 ENH : add drop_stats method for Epochs
new d3b078b API : append reason
new 112ae04 FIX brainvision: ELP point coordinates
new 79599fc TEST brain vision: save Raw with buffer size smaller than file
new e489318 FIX brainvision: event handling
new 09d91bf FIX: remove unused parameter
new 7f9c025 ENH: Option to fix psychtoolbox/stimtracker events
new 905f1b4 STY
new 3896dc9 OPT: make KIT and brainvision readers to share read_elp
new ba3030b TEST: read_elp
new 473df43 FIX: initial file offset when reading from brainvision eeg
new 5ea751d pimp drop_stats
new 098e5d6 make plot_drop_log a method of Epochs
new 201e375 WIP: Add mapping
new 9dc775c WIP ENH: Better coverage of necessary functions
new a68275b ENH: Better method naming
new 2a0727e FIX: Fix reading of normals for BEM
new dc7a8b7 WIP ENH: Better performance
new e20101e FIX: Fix silly dot error
new 1deeba5 FIX: Fix simple test
new e7cad97 FIX: Multiple suggested fixes
new 8869bc1 ENH: Use LUT for Legendre
new 82635f2 WIP ENH: Closer to working
new 4a350b6 ENH: Field lines work
new 8e6ef48 FIX+ENH: Fix n_jobs, add mode option
new 8579f6c FIX: np 1.6 req
new 72eb655 ENH: Dont require trans unless critical
new 4262260 FIX: Fix surface normals
new 29d306b FIX: Fix test
new 513acfb avoid some lists, fix typo in test + s/ctype/ch_type
new ae640cc FIX: Better coverage and coordinate frames
new f151571 Clarify procedure that finds layout
new caeecf2 address comments
new 740dac5 Merge branch 'trial_id'
new cd0c159 update what's new
new 8f3124d update whats new
new 5e301b2 ENH: better type check for Epochs. closes #1002
new 0f409de Expand drop_log docstring
new 050a49f Merge pull request #1004 from TalLinzen/drop_log_docstring
new e495826 Only MEG channels in topography
new 0b99a35 Merge pull request #1007 from TalLinzen/auto_topomap_channels
new 951cfb1 Add KIT-157 layout
new d375183 Uploaded the right files this time
new 76ff72c fix auto topomap
new c43371f Fix docstring for Layout class
new 77a85e4 Avoid merge conflict
new c053196 Merge pull request #1010 from TalLinzen/layout_docstring_new
new 152c931 Update dataframe docstring in Evoked
new 1e1f589 Merge pull request #1012 from TalLinzen/evoked_df_docstring_2
new 784e616 STY proper error message for auto coords RuntimeError
new d3fb7f3 Merge pull request #1008 from TalLinzen/kit_nyc_layout
new b04fe94 API: add deprecated ch_names parameter for backwards compatibility
new 613de03 ENH: remove KIT specific fix and add general interface to events
new f00b7f3 STY: array shape in DOCs
new c9e539a ENH: add ContainsMixin
new 24a2dbb revert git mess
new 842dddb cosmit
new f6fa887 Fix dataset update behavior
new 30cad21 Merge pull request #1015 from TalLinzen/dataset_decompress
new fee4285 ENH: keep brainvision events coser to vmrk (duration instead of offset)
new 2923482 address comments by @agramfort
new 68c10d0 fix import
new 38da44d Merge pull request #1018 from dengemann/contains
new b99268f FIX: add/remove stim channel on demand
new 13cabcf FIX: only synthesize stim channel if at least 1 event is present
new 0d19cc1 DOC: typo
new fe7b076 FIX: Exception for missing positions in elp
new d9c01c7 FIX: py3
new d429d2d Fix skipping of tests with dependencies
new 2818f21 Add option to show channel names in topomap
new 93dec43 plot_evoked_topomap channel name fixes
new c4306bf Fixed typo
new 14784cc Merge pull request #1022 from TalLinzen/evoked_typo
new 07cf702 Cosmetics
new 11ee5c5 Merge pull request #1020 from TalLinzen/patsy_dependency
new 277b53e Merge pull request #1021 from TalLinzen/topomap_ch_names_rebased
new 41c7604 Travis test case without optional dependencies
new 1595660 Cleanup + comments
new 2198b92 Put apt-update after get-key
new f583961 Merge pull request #1027 from TalLinzen/travis_nodepend_rebased
new 1f1dcd4 Merge pull request #998 from christianmbrodbeck/bv
new 82e7d94 pep8
new 90c3d59 streamline travis
new a9f8631 Merge pull request #1036 from dengemann/travis-conda
new 503ac73 add failing test
new 78c5110 first utf-8 io fix candidate
new 1c43bc7 cosmits
new 7e0cbb5 more cosmits
new 0b55033 fixes
new 379f288 more fixes
new 2554b11 cosmits
new 1d62c2f remove triage
new b2ab638 cleanup
new 7c946d2 remove unnecessary typing
new 7441159 implement clean solution
new ba0874d cleanup ii + update whats new
new 958d14a Merge pull request #1030 from dengemann/unicode-fixes
new 437e59b fix py3k unicode + sorting keys
new a5b1b13 cosmit
new 2ff2807 DOC : update citations info
new 642eb8d Merge pull request #1038 from agramfort/update_cite
new d68e6b8 fix non-unicode reading
new 86461a6 FIX coreg_gui: allow coregistration for subjects without bem file
new 0a69c02 RF: extract scale_bem as separate function
new 117aa32 DOC: add scale_bem to python reference
new fa69ee6 Merge pull request #947 from christianmbrodbeck/fix-coreg
new 3f4d5c0 FIX: pointer location in file
new 98f2cf1 FIX: set buffer_size_sec=1 to the test_read_segment functionality
new 77cb095 ADD: test when preload=False and read a segment of data
new 6d679c2 FIX: int to float by division
new 5f8b4ce STY: add space between standard and external modules
new a9c4e09 Merge pull request #1000 from t3on/tb-edf-FIX
new b22c53f python3 + additional ica fixes
new 8a4d1a9 Merge pull request #1039 from dengemann/ica-maint
new ca428e9 ENH: add Paris examples to ICA tutorial
new 41cd6c2 Merge pull request #1040 from dengemann/ica-maint
new 8bba4f8 fix anaconda bug
new 75915cb Merge pull request #1041 from dengemann/anaconda_bug
new bf0efca FIX: Set stim channel in test
new a4541f4 FIX: Spelling
new 9ecb317 FIX: Fix warning
new 1b3f969 add coveragerc
new 2d50aa7 more coveralls
new 6f67962 with coverage
new 7d65231 fix
new 48a1121 tweak coverage ...
new a772774 ENH: Add HTML coverage report
new 263a49f FIX: Undo HTML coverage
new 3b71bf1 WIP: Fix Travis
new e322519 ENH: Verbose coveralls output, only for full 3 version
new 2be42df STY: Cleaner if
new fa3b5ed FIX: Fix coveralls call to be in src dir
new 597b7f2 FIX: Run coveralls on full install
new 3ab045b FIX: No verbose output (VERY long)
new 0812996 ENH: Add nose-timer
new 8015658 STY: Clearer comment
new 25eafab FIX: nose-timer on py3
new dd9bc7d Merge pull request #1043 from Eric89GXL/coveralls2
new 55044eb Clarify use of closed intervals
new ab27e82 Merge pull request #1044 from TalLinzen/interval_docstring
new 7352f5a Add title to plot_evoked_topomap
new c23aedc ENH: option to add reference channel
new c146610 STY _get_eeg_info(): predetermine property list length/use array
new 1cb04a3 fix title positioning
new e15b9a7 FIX: Add spatio_temporal_cluster_test
new 04cd7c3 FIX: Add failing test
new 1bc4d40 Merge pull request #1048 from dengemann/topomap_title
new fbedbdc MAINT: osx backend
new 0a0c2d5 MAINT: osx backend
new 91cfddc revert undesired changes
new 0576cbd prune dbg
new c2a4203 STY
new eb337c1 Update README.rst
new 33733e2 fix plot raw sizing
new 509ab77 Merge pull request #1052 from dengemann/mpl_maint
new 3e8cc0a ENH: add field line viz function and method
new c0999c8 remove contains experiment
new 4cb0760 API : refactor the plot_evoked_field function
new d49bfce API : name it make_field_map
new 343ce38 add some comments
new 51873df fix test
new fbf0bd1 fix test
new 06f11c9 API : refactor plot of field maps (make make_surface_mapping private)
new fff4e3f update test_field_interpolation
new fc9760b TST : add test for field viz
new 7beeb03 keep n_jobs in examples
new f8efe78 API : add plot_field method to Evoked
new 8794699 wining 20s of test time + pep8 in viz.py
new 5a8e22e FIX : make it work on CTFs systems + demo the feature on SPM data
new 167bef0 misc what's new
new cb393b6 FIX : make test pass without sample data
new fef23a5 misc
new fcb0e0e FIX : tests should pass now...
new 6354929 MISC : check ch_type + update docstring
new b4b76d1 cosmits
new 23baba7 improve tests
new ff9b4c2 Merge pull request #1014 from dengemann/viz-helmet
new f005c00 fix reg cov bug
new 50e92f1 cosmits
new b206e0e cosmits2
new dc0f922 fix cleanup cov test
new 9aac8c0 fix whitened evoked test
new fa3f26c FIX + API : set exclude to 'bads' in regularize
new 65058b9 API : deprecate Epochs.drop_picks in favor of drop_channels
new b7b94a4 ENH : use pick_info
new 32415ea FIX : drop_channels on read epochs
new 34aeea8 FIX : don't test viz code outside of test_viz.py
new 3580939 Merge pull request #1058 from agramfort/epochs_drop_channels
new 0f96bf0 add DropChannelsMixin
new 9575ecc revert
new 98c1c49 ENH: add equalize_channels function
new 74282f1 ENH: add some printing
new adc7517 undo reverts
new c0e3418 ENH: fix getattr
new 2a41ae1 Merge pull request #1062 from dengemann/equalize_channels
new d46a459 ENH: add indexing to RawEDF
new 2e767c1 Merge pull request #1063 from t3on/tb-edf-ENH
new cc19e48 Merge pull request #1033 from christianmbrodbeck/bv-ref
new ec59956 FIX: Fix for py2.6
new 13900e6 Merge pull request #1065 from Eric89GXL/py26
new c7df51f FIX: Fix errant assert_less
new 9b525f0 ENH : more robust find_layout for Vectorview systems
new a93f3cb WIP: add EOG support
new 6288fd3 OPT: assign dict values on init
new 60b5c45 TEST: Brain Vision EOG channels
new 03a6922 DOC
new e689986 Merge pull request #1067 from christianmbrodbeck/bv-eog
new 7f661f3 FIX: Disallow interp for discrete src
new 2f4070a Merge pull request #1049 from Eric89GXL/disc-src-fix
new 6e43c9e address decim bug
new d5bf5fa whats new
new b102d31 add BUG section
new 5713a04 Merge pull request #1072 from dengemann/stc_decim_bug
new c82bde0 Skip test for old nibabel (<=1.3)
new ea5f2a2 make test work for old nibabel
new e026287 Doc build fixes
new de50409 Merge pull request #1076 from mluessi/fix_doc_build
new f4e9bcb fix silly bug
new c1c8307 Merge pull request #1074 from mluessi/fix_nibabel_skip_test
new 467aa02 FIX : avoid writing outside of build dir when running tests
new a713fdd Merge pull request #1079 from agramfort/config_temp
new 55e1d9c ENH: check that event_id is available
new 39e5434 attempt to unmute warnings
new c8e48cf attempt 2 to unmute warnings
new edcd54a remove warnings test
new 25738be Merge pull request #1083 from dengemann/check_event_id
new 0179657 ENH : add plot_events function
new fddceb5 update what's new
new 9c7d38f improve docstring
new 19a1482 Merge pull request #1084 from agramfort/plot_events
new 2a8c83c FIX : don't convert times to ms before doing baseline correction in plot_topo_power
new e7f9abd ENH: improved circle plot
new a8d4a0c FIX : allow reading of old epo.fif files
new 8aade79 cleanup
new 639982a ENH: Cleaner surface normal calculation
new 7d9915f ENH : add write_info function
new 8bfe5c0 Merge pull request #1092 from agramfort/write_info
new 98dd152 STY: Kwarg
new 36f9d60 oups...
new d6f809f MISC : use + not - with combining conditions in epochs
new d721b46 Merge pull request #1094 from agramfort/misc
new 933cfe2 Merge pull request #1093 from Eric89GXL/cleaner-normals
new d9974a8 FIX: doc image width < 850
new e47a343 Merge pull request #1090 from mluessi/enh_plot_con_subplot
new 1011931 Merge pull request #1095 from mluessi/fix_doc_limit_fig_width
new 7e821b5 update what's new
new 2e28f35 ENH/BUG make event_id reflect selection
new 8995009 FIX order
new a64ce89 Merge pull request #1098 from dengemann/propagate_event_id
new 50aef6c FIX: don't call _data_path on import
new c24416c Merge pull request #1100 from mluessi/fix_data_path_on_import
new 2f8e018 change find_events to accomodate neuromag bug
new 8915e72 ENH: Allow anonymizing raw
new 085b128 FIX: Add tests
new 3896f8c FIX: Add entries for other raw types
new 4319eb6 FIX: Py3 test
new 63188dd Merge pull request #1104 from Eric89GXL/anonymize
new e8251b8 change find_events to accomodate issue an error for one sample events
new 78752cf Merge branch 'find_event_defaults' of github.com:dgwakeman/mne-python into find_event_defaults
new 7aa0685 Incorporated comments from github
new f451359 FIX: Remove debug print
new 289325e incorporate comments part deux
new 6cb6987 added interactive callback to isolate nodes on circle plot
new c0d59ed made interaction optional in circle plot
new e697d4a FIX scale_source_space: assign subject ID
new 68fcb2a fix circle plot interaction for multiple subplots
new 4756827 fix circle plot clicks for arbitrary reorderings of nodes using circular_layout
new 654efa3 more comment incorp and hopefully added tests
new 51289ad Merge pull request #1115 from christianmbrodbeck/fix-ss
new 48ebfd9 cosmit
new 02306d7 Merge pull request #1 from mluessi/pr1116_cosmit
new ff27347 Merge pull request #1102 from dgwakeman/find_event_defaults
new 53461a8 cosmit
new 81748cb fix circle interaction subplot
new 37230cc Merge pull request #2 from mluessi/pr1116_fix_subplot
new f1f02ea FIX: Fix coveralls
new 0aa7f96 Merge pull request #1119 from Eric89GXL/fix-coveralls
new 8470746 updated changelog
new 6a0b5c9 Merge pull request #1116 from aestrivex/circle_plot_interaction
new 828d6a1 ENH: Add patch info to source space
new 7b0d10b STY: Cosmit
new 0c99e4e ENH/FIX: DICS power
new 0453f39 Merge pull request #1121 from dengemann/fix_improve_dics_power
new a830613 Merge pull request #1118 from Eric89GXL/patch-stats
new f452b5e FIX: supply subjects_dir in test
new 961d965 ENH: add split_label() function
new cd4b453 ENH assert_labels_equal: issue message specifying mismatch
new d654eee FIX Label.__add__: add subject for new label
new fe86317 DOC: whats_new
new acec71f OPT split_label(): determine normal based on coordinate on sphere
new 6bb83ed FIX: use py-2.6 compatible syntax
new 94874f7 STY: remove unused import
new 02a1f48 STY
new b7f6448 ENH: add Label.split() method
new dfd5c56 ENH: Better linalg.svd
new ebcd7f6 Merge pull request #1085 from christianmbrodbeck/split-label
new 5e13086 Merge pull request #1122 from Eric89GXL/faster-inv
new 5729636 STY
new 0850c45 ENH Label: add .color attribute
new 4154ec2 OPT labels_from_parc(): use Label.color attr
new b4f1bd0 TEST
new db2f19b ENH: blend Label colors when adding Labels
new 5162a33 OPT parc_from_labels()
new 5b01aa6 FIX grow_label(): assign Label subject
new a3b973b FIX compatibility with old numpy version
new d133932 FIX: py3 compatibility
new 92c29e1 DOC: whats_new
new b5084b9 ENH: add color when splitting labels
new 3721a9e STY TEST: use `assert_equal(x, y)` instead of `assert x == y`
new a932d78 ENH: add .color attribute to BiHemiLabel
new 397668e TEST STY: use `assert_is`
new a7ae62a ENH read_label(): add name and color attributes
new 2236d01 DOC: Note that subject and color are not saved
new 186ccaa ENH grow_labels(): Assign color to labels (based on plt.cm.spectral)
new d0dd851 FIX DOC grow_labels()
new e4b09a7 ENH stc_to_label(): add colors
new 6cc5248 fix in what's new
new da5005c DOC: add split_label to reference sectione
new b517c8d Merge pull request #1111 from christianmbrodbeck/label.color
new cf56514 DOC: add TOC to Python Reference
new a3913ba Merge pull request #1125 from christianmbrodbeck/doc
new a652b5f ENH: added 'max' mode to extract_label_time_course
new 36cdb22 added comment to pass statement (line 2560)
new c67e9c2 added to max mode to what's new. Added test
new bcce870 moved feature addon to bottom of file and added link. Formatted doc string
new 2ccf3ca Merge pull request #1128 from MadsJensen/ECH_add_max_opt_gen_extract_label_time_course
new 687340c fix style errors
new b7d8424 add mne.rename_channels
new 8059e95 incorporate comments and tests
new 98e2a96 incorporate comments and tests
new 5f51289 fix style issues
new 0ddf333 comments part deux
new 57b094a fix stupid rebasing issue
new f614ca4 reset ch_names
new 7932a5c stupid fix
new fad6de4 FIX:import of rename_channels in test_channels.py
new 955489a cleanup + fix
new fa5e98a address private hangout with dan
new d3cd0bc alias: mapping
new 826dc9e Merge pull request #1 from dengemann/mne_rename_channels
new 383a343 add rename_channels
new ef63ef0 Merge pull request #1124 from dgwakeman/mne_rename_channels
new c8d609e Allow wget to continue download of a partially downloaded file
new e91f7c1 backport fake assert_is
new ee4f648 cosmit
new ea2b9f1 Merge pull request #1131 from dengemann/fix_as_is
new b4b6df1 Merge pull request #1130 from saketkc/development
new 3b5fef2 FIX : sfreq shall be a float
new 4de2829 ENH: add ems filtering
new 6933340 BUG: add test + remove typo
new 7e51833 cosmits
new 0465253 FIXES
new 6c9fa36 FIX stupid bug
new 9111799 ENH: add test
new 9a2d1aa ENH: more tests + streamline example
new 5c7f7eb FIX: curdir
new 780f65a whats new
new 028138c cosmits + typos ... (thanks mainak)
new a0b0991 cosmits ... more for mainak
new c96aa77 cleanup
new 09d77c3 typos+cosmits
new ab979d0 cleanup + adding comments to address
new 8235803 ENH: improve tests
new 3a5ec2f ENH: smarter API + advanced condition handling
new 3c2bbce FIX/Optimize computation
new 29c7752 ENH: multi channel support
new ecf1c85 ENH: add parallel support
new 7b0d914 ENH: fixes compat
new c8bf4fb cosmits
new 9ebd7b5 cosmits2
new 4d090f4 convert to list
new 6d2b6dc convert to list fix
new ad03b9f stupid typo
new 1a082cb cosmits
new 0481aaa Address discussion
new 80e8e35 Address discussion 2
new 4edadac FIX: warnings
new 9433d09 fixes
new af6fffe fix python 3k build
new 9af4ff4 cosmit
new 089af19 get rid of warnings, improve test
new 8fcb90b add demeaning
new 75a6178 Merge pull request #1132 from agramfort/edf_sfreq
new 78521da FIX: perecentage non-ignored
new 0beb58d Merge pull request #1134 from dengemann/drop_log_perc
new 0d99bb1 Enhance API:mne.get_config to return config dict when called wthout params
new a023e78 Fix docstring, make more explicit
new 01a0395 Fix return config if key is None
new 370c84c Fix check for non null keys in os.environ
new a470847 Merge pull request #1135 from saketkc/issue#1112
new 032b8d6 allow for colon in epochs keys
new c9257d7 Merge pull request #1136 from dengemann/fix_deserialize
new 815e11f attempt at clarification
new 300ee7b FIX: Fix step-down-in-jumps procedure
new 29e41ae FIX: Revert errant fix
new 2648f2b STY: Clearer algorithm
new f61ffe1 ENH parc_from_labels(): Raise error for overlapping labels
new e5f41ef API: add `read_annot()`, deprecate `labels_from_parc()`
new dc00d98 RF/API `write_annot()` to replace `parc_from_labels()`
new 7aea32f DOC: reference and whats_new
new 887e299 update tests and examples
new b7bdb60 RF write_annot: check parcellation before writing
new 0ce2f74 FIX: Py2.6 compatibility (test_label)
new fdc0f13 ENH write_annot(): assign "unknown" label to unlabeled vertices
new db5042c ENH write_annot: add logger info for unlabeled vertices
new 58aa8f3 DOC: better error message
new c501875 ENH colors: make color assignment predictable
new 4dd53ec DOC: deprecation messages
new 2813d31 backport fake assert_is_not
new f6ecab0 Merge pull request #1142 from Eric89GXL/fix-step-down
new 198add7 Update python_tutorial.rst
new e10da32 FIX: Add step-down fix note
new 84eab4e Merge pull request #1126 from christianmbrodbeck/parc-io
new 87da139 FIX: py3 compatibility
new 6b14560 FIX: Py3k fix
new 95f4df6 ENH: Faster, clearer fwd accumulation
new b23a5c3 Merge pull request #1143 from Eric89GXL/clearer-fwd
new 1edd045 ENH : make EMS work
new 7d21a14 FIX : make sure bad epochs are dropped
new 4b89e4b Merge pull request #1091 from dengemann/ems_filtering
new 8d89b4d FIX kit2fiff marker GUI: when resetting also reset marker `use` parameter
new 15b19ed Merge pull request #1145 from christianmbrodbeck/fix-gui
new ab0e97c complete refactor
new 03afaa9 incorporated comments
new 4055061 returned examples piece
new 728c669 made examples a comment
new cb5ea0e FIX:contribute link
new a549ee7 remove ease_install and github
new 2f6e994 Merge pull request #1140 from dgwakeman/getting_starter
new 4693008 cleanup viz
new b51830c Merge pull request #1150 from dengemann/cleanp_anova_example
new 05f8507 failing test
new b0a22d7 FIX: fork did not happen
new a7d7ea4 update whats new
new a37929e cosmit
new cd7a057 pep8
new ae1dd1e Merge pull request #1151 from dengemann/ica_twice
new 025e345 add GSOC info
new 8d3cb17 Merge pull request #1152 from dengemann/gsoc
new 5c28b47 cosmit
new c0095fd Merge pull request #1153 from dengemann/gsoc
new 3ce9658 fix markdown VS rst
new 066a0a9 Merge pull request #1154 from dengemann/gsoc
new 3b597c2 FIX write_annot: take into account numpy __contains__ behavior
new 55f5ae0 ENH GUI: store user provided mne_root and fs_home paths with set_config
new e0db299 TEST BK: filter.resample()
new 4bd4b40 FIX filter.resample(): don't modifie input array shape
new 53b421b ENH filter.resample(): re-add axis argument for backwards compatibility
new 6c1d792 STY
new b19ce62 ENH: grow labels in parcellation
new cbf70b9 DOC: explicit error message for potential backwards compatibility issue
new 15571ff ENH: Don't create config dir unless necessary
new 4859f6c FIX get_fs_home() return
new 4e1c988 DOC
new 740b9af DOC
new 44d137d BUG: Fix _lead_dots breakage due to API change
new 9d906a4 Merge pull request #1163 from christianmbrodbeck/fix-resample
new bea75f5 Merge pull request #1167 from bburan-galenea/bburan-galenea/uwsgi-and-mne-config-file
new 85da8f9 API: integrate growing labels without over lap into grow_labels
new d38a7d0 Merge pull request #1159 from christianmbrodbeck/gui
new 7a18613 TEST grow_labels without overlap (BK)
new 5ad3ca3 FIX grow_labels(overlap=False): assign each vertex to closest seed
new 551a883 ENH grow_labels: Allow seeds with multiple vertices.
new a5edf41 ENH grow_labels: add label names, `names` parameter
new f866e8c FIX grow_labels: variable name conflict
new 71c22e5 FIX grow_labels(): assign color to each label
new 2b6cccc Make sure we can load epochs saved in 0.7.1
new c8d431f Merge pull request #1156 from TalLinzen/load_0.7_epochs
new 60c6741 FIX:read_trans
new 171c5bf COM:
new b60c751 STY:fix indent
new 5909e81 COM:round 2
new 9f9eaf1 COM:round 3
new b530366 Merge pull request #1170 from dgwakeman/read_trans
new 1364639 DOC:fix directory description
new bfce6bd STY:fix style issues in meas_info
new 3475712 Merge pull request #1165 from christianmbrodbeck/grow-parc
new c4d4c95 Merge pull request #1172 from dgwakeman/fiff_open
new 4085bf8 Merge pull request #1173 from dgwakeman/meas_info
new ff166e9 FIX trans file I/O test
new 3d053f7 STY trans file I/O test
new 64151b7 FIX grow_labels() py-3 compatibility
new 27bad33 ENH:add name warning
new 56aac90 COM:round 1
new 1c606ed Merge pull request #1175 from dgwakeman/write_trans
new d246958 DOC : fix links
new 4d1dc2b Added on_missing to Epoch init
new 185ac4f Added to docstring
new f67d01e Added to proper docstring
new 499d041 Added to proper docstring
new b772dbe Added to proper docstring
new 07638ba Added to proper docstring
new ea82cb2 Modifying the URL in datasets/utils.py to take into account the shift in file at ftp://surfer.nmr.mgh.harvard.edu/pub/data/MNE/MNE-sample-data-processed.tar.gz
new 11b5580 Merge pull request #1184 from TanayGahlot/tutorial
new 0ab18ad Fixed py3k warning count
new 6dc08ed Fixed redundant elif
new c998c9a Fixed doc string
new 6a4c01a Changed elif, output bad value
new 6cbeb3f Merge pull request #1182 from rkmaddox/missing_event
new 60db71d FIX: vmrk parsing, ADD: edf modules to mne.fiff
new a871de7 Merge pull request #1191 from t3on/tb-brainvision-ENH
new 179aa70 FIX scale_source_space: scale distances if present
new b37d76b DOC
new bfc4540 Merge pull request #1193 from christianmbrodbeck/fix-scale
new d8e256f FIX: bug with coord transform writing / reading
new e0977d4 add test that would fail + update whats new
new ce7bb73 Merge pull request #1199 from dengemann/fix_info_trans
new 7dfe58d ENH: invoke GUIs from the command line
new 7019a21 FIX coreg bin: add parser
new 937dde6 Merge pull request #1204 from christianmbrodbeck/gui-bin
new d75ce5b DOC: whats_new
new 0cf7281 minor enh: remove axes border from connectivity circle display
new ba60d0e Merge pull request #1208 from aestrivex/remove_circle_border
new bdda11b FIX: ICA scaling in cross-channel scenario
new c613d6a whats new
new 16e3ccb Merge pull request #1209 from dengemann/fix_ica_scaling
new 992e264 FIX: node width for irregular node spacing
new 1103d14 typo
new 9b66e24 ENH: add_channels_epochs function
new 9cf735f cosmits + factorize checking
new 687392b Merge pull request #1212 from mluessi/fix_node_width
new 66d5fe3 ENH: better and more tests + address discussion
new 7d0e518 pep8
new df69830 ENH: address discussion
new 6ea77ab cosmit
new 9d72214 cosmits
new 3aaa387 fix filename error
new 2e4e464 python3 remove filter
new 7882037 ENH: added pick_channels Mixin as complement to drop_channels
new dbc4f6f define meas_data resolution + fix py3k next
new e6d3fb7 DOC : None in raw.save
new 5a2e2b1 ENH: added pick_channels Mixin as complement to drop_channels
new 5423766 ENH: added pick_channels Mixin as complement to drop_channels
new e46b30d Merge pull request #1213 from dengemann/add_epochs
new cd76fb0 ENH: added pick_channels Mixin as complement to drop_channels
new d415e5b ENH: added pick_channels Mixin as complement to drop_channels
new 3b81373 Merge pull request #1217 from adykstra/add_pick_channels_mixin
new eee369d ENH: Nicer stim timeout for Travis
new 1c69dce ENH: Be nicer to Travis
new e4ccbf0 Merge pull request #1221 from Eric89GXL/fix-test
new f8988af FIX: Fix deprecated scipy function
new 317126b FIX: Fix connected
new 943be17 Merge pull request #1224 from Eric89GXL/fix-dep
new 73ba8b1 WIP/ENH: add EGI simple binary IO: header + events parsing
new eb453a4 add data reading
new e309de4 ENH: add new Raw constructor
new 8b1679d pep8 + proper module + fixes
new 205a3ec global fixes
new 218819b ENH: add first tests
new 4463ce3 ENH: more tests
new 2d9614c address discussion
new 73126d5 fix attempt realpath
new faf0afc update travis yml
new b4f3593 update reference + whats new
new 54dbac1 add missing init
new cc4c5dc DOC: comment on trigger
new ae7738d more tests + pep8 + handle trigger synthesis
new 3f54a7a ENH: attempt to fix py3k
new 2d3497f fix travis py3k ii
new 3d33e9a py3k binary file object
new cf8f29b improv DOC
new 773163f pep8 + pyflakes
new 74a0ac1 missing verbose
new 28f2c55 ENH: unit scaling
new 2baf146 FIX +cleanup
new 9c74647 Merge pull request #1218 from dengemann/add_egi_io
new cd79710 WIP: Make base raw class
new 67def3a FIX: Fix location of base.py
new f10b4a3 FIX: Revert silly change
new b4f15be FIX: Fix bad file overwrite
new 49d5af9 FIX: Fix abspath
new 365ae38 FIX: Fix docs
new ef71597 ENH: Add nose-timer
new e8cdd29 FIX: Use realpath
new 442a80c Merge pull request #1223 from Eric89GXL/baseraw
new a27354c ENH: Speed up legendre tests
new 1e28893 WIP: Use 3.4
new f8b6a90 ENH: Much cleaner file handling
new 1a75d69 FIX: Get rid of warnings
new 71b4c47 FIX: Fix some warnings
new 57e89fb FIX: Fix errant change
new 3802684 API/ENH: better handling of STI 014 synthesis
new 681380d cosmit
new 683814e add test for event_id + fix minor bugs
new 8a78bee FIX: Remove lingering references to info["filenames"]
new ba91a75 FIX: Fix for older version
new 75a5c5a FIX: Fix gzip context for 2.6
new 50c4a4c STY: Fix spacing
new 605771f FIX: Fix for 2.6
new f31a71b Merge pull request #1231 from dengemann/add_egi_io
new d5eb2b0 Merge pull request #1230 from Eric89GXL/faster-tests
new 9a88a37 Merge pull request #1222 from Eric89GXL/conn-fix
new 1346ded FIX: Always return self
new 58db1ec fix doctest (filenames is not longer printed)
new c866046 Merge pull request #1238 from mluessi/fix_doctest
new 2486d23 Adding actual single-trial inverse plots to example
new f777bc4 Adding legend
new 24ae041 Fixing legend typos
new 539fe52 Cosmetic changes to code
new b1b8c94 Removing extra blank line at the end
new c94fac0 cosmit + pep8
new 47b35f4 ENH: Add custom data use
new 54a38b7 FIX: Docs
new 9d57e59 add read_ and write_evokeds functions
new b35e008 tests
new b67c3d5 FIX: Fix name and tests
new effd864 FIX: Fix BTI
new c469e4f FIX: Remove debug
new 7da9b76 FIX: Remove read_evoked use
new 127bf16 Merge pull request #1 from Eric89GXL/read_write_evokeds
new aeaac75 Merge pull request #1243 from Eric89GXL/custom
new 7a700d7 FIX: Update whats new
new 2c283eb FIX: correctly load the stim channel from EDF+ files.
new 8fc0cc4 removed debug output
new 3ea6204 implemented event parser
new 9e5cec5 added test case for the event parser (WIP)
new 7fe5f8f python 2 compatibility
new 19a9463 put stim_channel masking in again
new 234970d support for EDF+ annotations (TALs)
new 67e5c66 PEP8: blank line
new 9b582d0 regex tal parser
new 3cdc6f3 unittest for the tal parser
new 924fefb disabled file test (for now)
new 32b1d1a adjusted parser test for python 2
new 8429cc2 coding style
new 7094a93 added test for empty annotation
new 27e0d6e create stim channel from tal events
new 70ca96d python 2.6 does not like dict comprehensions :(
new 984fddc Added authorship information
new 2659dd8 Updated changelog
new 70fc44e zero order hold interpolation of stim channel
new b5499cc whitespace around operators
new 1a17b20 Annotated test.edf
new 8e97b65 moved tal event offset by 1 sample
new 5ccc926 Exception when loading TAL without preload
new f1f8b91 Test for writing raw file with parsed annotations
new 12bc1fc Keep original EDF events around
new 4ce4cb4 deprecate setno and change return types depending on "condition"
new 1cb3e90 PEP8
new 49dda4d Merge pull request #1250 from t3on/tb-pep8-fix
new 6feb304 pep8 and replace Evoked with read_evokeds where appropriate
new 00507d7 whats_new
new efd66a8 whats_new
new 0fd9dc5 Merge pull request #1244 from adykstra/read_write_evokeds
new 4b91051 FIX: Dont assume stim channel default
new c39c1bc Merge pull request #1251 from Eric89GXL/stim-fix
new 5f48e13 FIX: drop cals
new 1ddce8a _BaseRaw
new 03f1d10 _BaseRaw ii
new d848c03 Merge pull request #1253 from dengemann/fix_drop_pick_channels
new 507e71b ENH/FIX: EGI event handling
new 48a8f67 FIX py3k warning
new 11fc466 cosmit
new 7a3e36f Merge pull request #1252 from dengemann/egi_fixes
new 8144ccf tiny fix
new c80eb30 fix typo
new 455b1ba remove #XXX
new 28605e4 move_cals_outside_preloaded_check
new 237ad47 move_cals_outside_preloaded_check_2
new cf76d71 tests
new b7a078a move_cals_outside_preloaded_check_3
new a9f753e make_tests_more_explicit
new 719f63f refactor
new 3f9f662 Merge pull request #1255 from adykstra/fix_pick_drop_mixin
new f5a1dc3 ENH: make plot_evokoed_topomap more flexible
new d56e3ab ENH: add callables
new 16df526 address discussion
new 3a4ac50 address discussion
new 9b428c9 fix colormap
new c03f09b add some doc comments
new 620c8d2 typo
new 8ab9a9a FIX: error message
new e612b13 ENH coreg-GUI: grow_hair
new 0064dac FIX: include grow_hair in reset
new 5a5dc69 Merge pull request #1247 from christianbrodbeck/coreg-hair
new 908b94b Merge pull request #1258 from dengemann/improve_plot_topomap
new a9f372b FIX/ENH: bes strict about type of picks attr
new 8aa78f5 address discussion and extend tests
new 1388111 clearer message
new 963fe4e check type array
new e2568e8 remove unnecessary return of self in private function
new 0a11342 update picks docstrings
new cf717ed EGI fix ch names
new ec30bed allow long (e.g. 10L) filter length
new b14cce4 Merge pull request #1264 from maedoc/permit-long-filter-length
new 3bf6a29 py3 compat filter_length integral test
new 61b81ee ICA fix vmin/vmax
new 3d47e44 Merge pull request #1265 from maedoc/permit-long-filter-length
new d5b5496 API : add deprecation
new 32bf8ae FIX: Fix deprecation
new 58c88e2 FIX: Fix setup
new e94f6b3 FIX: Dont neglect poor Travis
new cc36f3d FIX: Update whats_new
new 45da654 ENH: Cleaner Travis output
new 02e6b10 FIX: Fix open files
new c061532 FIX: No with support
new 7dc2411 FIX: Fix indentation and whats_new
new 8c8bf73 FIX : renaming mne.io.FIFF... in tutorial
new 85a3245 DOC : rephrase what's new
new 843487a ENH : add support for morphing of sparse estimates without smoothing
new 9a2124f ENH: add EpochsArray
new 5ed7098 update whats new
new eca6abe add license + update reference
new 7031ecc ENH: Add verbose option to mne.io.read_evokeds()
new 3e5beca FIX:Pass verbose to Evoked
new 7bdbf62 Merge pull request #1278 from mainakjas/evoked_verbose
new 95a67e3 address discussion and resote py26 compat
new 3035142 update reference
new 2a7f218 address discussion revert imports
new 1eb901f add decim == 1 + decim idx
new 3d0b0bb Merge pull request #1277 from dengemann/epochs_array
new e098c13 revert array license author info
new 58cf089 Adding functionality to connect to fieldtrip client.
new 25500ce Make code parallel and add new example.
new afc5467 STY: Removed Events class and converted CamelCase to camel_case
new a1296d8 ENH: Remove redundant methods + more elegant way to poll for samples
new 749ecc5 FIX ENH STY: Expose only FieldTripClient to user, improve docstrings, coding style etc.
new fb570ec STY: Misc stylistic changes
new a413cf7 Trying to fix weird multi-threading issue
new 9b14130 ENH: Make plot interactivity work in python / ipython / everything else
new 1dc20a8 FIX: Renamed example to hide it from sphinx
new 57d101f ENH: Moving FieldTrip part to externals
new 4d5fcce FIX: addressing Alex's comments
new 73b48ac fix relative import in mne command for ecg
new e59374a FIX : import eog mne command
new 664d509 FIX: Fix volume source space calculation
new 5009bd7 Merge pull request #1284 from Eric89GXL/fix-vol
new 291726d ENH: Default measurement info
new 2486897 FIX ENH: Calibration coefficient set to unity, manually setting bad channels, better documentation etc
new 54bfad7 ENH: expose picks parameter in estimate_rank
new dfaa693 FIX: Addressing Alex + Eric's comments
new 4c29a13 cosmits
new 8377745 Merge pull request #1286 from dengemann/estimate_rank
new 7a8d4f5 Merge pull request #1054 from mainakjas/ft-connector
new dfedae2 FIX: incorrect n_samples ICA
new 2a9ed26 Merge pull request #1288 from dengemann/fix_ica_n_samples
new 695bc91 correct default ch_type to string value
new 8dfc06a Merge branch 'master' of https://github.com/mne-tools/mne-python
new 6f0c075 fix error msg on bad ch_types entry
new 6ffd9d9 add test for failed default ch_type
new 717a1ff Merge pull request #1289 from maedoc/master
new 5c892bd ENH: Added colour param to plot_events
new 879a6fb STY: fixed typo.
new 99627cc changed ev_idx to ev_mask
new 9d0fb45 FIX: implemented cycle on colours
new 6d8c214 FIX: substituted next with zip in enumerate
new d2a2771 ENH: added event_id and legend
new 3ece857 ENH: event_id and colour dictionaries implemented, and legend
new 1f84069 ENH: refactored event_id, colour and legend handling
new eab01be ENH: tests + working event/color combinations.
new 8634dd3 ENH: code improvements.
new 09b5ffa reinstated warning
new 8c09ecb ENH: added event_id/color checks + example.
new 98425a6 ENH: ylim scales with event_id values
new 9c6c5f6 sorted out logic for input dictionaries
new 972b364 fixed check against existing events
new 8680f64 Modified check of event_id against existing events.
new 3f1001c Code simplified.
new 32330d7 Replaced for loop in event_id check
new 7d8fabc Added some comments.
new d8ab547 Fixed event_id check; added comments.
new 5a818e2 ENH : simplify plot_events with color and event_id
new e96f074 cosmit on plot events
new cebf7f9 Merge pull request #1287 from agramfort/viz_colors_events
new dd17542 FIX: bug in reading FS new quad file
new cb7d619 fix / 100
new c6331c9 Merge pull request #1295 from mluessi/fix_read_surface
new 2254564 ENH FIX: Better realtime example + client waiting + realtime friendly plot_events
new 96ae03a ENH: allow for concatenation of events when concatenating raws
new 3a01c07 cosmit dosc string
new c5170bd renam param + update whats new
new 477f03f FIX: Addressing Alex's comments
new 0f5e93c FIX: Use np.asarray in plot_events
new a935daa Merge pull request #1297 from dengemann/concat_raws_events
new d549fcf ENH: Simplified example
new 7aa5576 Merge pull request #1296 from mainakjas/ft-fixes
new 3aa11f4 FIX _verify_source_estimate_compat() error message
new e21ef50 Merge pull request #1299 from christianbrodbeck/fix
new cb9ab46 FIX : don't split array in more splits than its length
new 555ce53 ENH: add support for fieldtrip neighbour matfiles
new 69efcaa update whats new and address discussion
new 44f7950 ENH: add picking
new 399faad add comment
new ed8c436 ENH: Throw warnings for non-standard events and evoked filenames
new ed97836 FIX: mixup of events/epochs fixed + addressed alex's comments
new 13d288f ENH: Impose MNE naming conventions on -proj.fif and -proj.fif.gz
new 155eaf2 FIX: Make read_/write_proj in io.proj private function
new f72d7b2 ENH: MNE conventions for covariance files
new fd6b2d3 FIX ENH: mne conventions for forward solution + docstring fix for read_epochs
new d5b48b3 ENH: MNE conventions for inverse operator files
new 71843cb ENH: MNE filename conventions for source space files
new 79c54ee ENH: address discussion + remove unnecessary recursion in helper
new 4971888 ENH: Filename conventions for raw filenames
new 5eb3e12 FIX: updating new filenames test_proj -> test-proj
new 24c8daf remover another todense
new 5f6aafe Merge pull request #1306 from dengemann/read_ch_connectivity
new a1425f6 FIX: test_bin.fif's replacement + simplefilter
new fbd5579 misc
new 5e31b90 revert misc
new bb95e02 FIX: Addressing Alex's misc comments
new b2b079f FIX ENH: Add warnings for -ica.fif and -ica.fif.gz files + PEP8 fixes in ica scripts
new 95e2f3e FIX : avoid 2d indices with sparse matrix for old scipy
new aabaf6f FIX: Changing filenames in tests to reflect new conventions
new ff678ec FIX: Adding warnings.simplefilter('always') + removing redundant newlines
new 4f4c11b ENH: Make a function fname_check in utils to make code compact
new 58f665e FIX: Catch warnings that can't be fixed
new 452f4ee FIX: Fix warnings
new acea325 FIX: Fix vol stc warning
new 5bb8110 Merge pull request #1307 from mainakjas/file-name-fix
new b49edd2 ENH Label: option to expand label from source space to surface
new 646b88b TEST: Label in src
new b5d47ba ENH Label in src: fill in values from closest vertex
new 1ea6b7c ENH setup_source_space: option to run add_source_space_distance
new 2c86f7f FIX test_source_space: subjects_dir
new 2b53809 ENH Label in source space: raise exception if not all vertices are in source space
new 2af0e6f ENH Label: add .fill() method to fill surface from source space
new 8203755 WIP ENH stc_to_label: add 'patch' option for smooth parameter
new 8720f62 FIX test_stc_to_label
new 6cc5a53 DOC: whats-new
new 35fa928 FIX: use fixes.in1d
new ee31042 FIX Label: source spaces without distances
new da84bbd API Label: move source space completion into .fill() method
new de42e39 TEST: remove redundant test
new f9cd88a ENH: Add plot_trans function
new 9793d77 API: deprecate old label smoothing in stc_to_label()
new 61ff777 DOC fix
new 6a1298f ENH: Moving _find_trans to transforms.py to avoid circular import
new 0224465 TEST: make warning test more lenient
new 973a226 DOC: Added plot_trans to whats_new
new 3d1e259 FIX ENH: Example + addressing Alex's comments
new 181e33c TEST: Added test for plot_trans
new fe7bac6 TEST: make second warning test more lenient
new 4f56a29 DOC FIX: Adding docstring to example + making helmet transparent
new 780166f TEST: handle warnings
new 708ba52 ENH: Add EEG electrode display to plot_trans
new 4379e48 FIX: More explicit checking of ch_type
new 0a2ffd9 drop support for picking channels if Raw not preloaded
new 4e8031f FIX: Raise ValueError for random string as ch_type
new d5a6fbc Merge pull request #1323 from dengemann/drop_channels_preload
new 162c123 Merge pull request #1320 from mainakjas/plot_trans
new f5be541 FIX: use in1d from fixes
new 1117e83 Merge pull request #1192 from christianbrodbeck/label
new 9f4eceb FIX: add numpy.digitize to fixes
new 122a56a FIX label: use digitize fix
new c303447 use LooseVersion
new ad5d601 DOC fixes.digitize: note on limitations
new f7a09f1 Merge pull request #1326 from christianbrodbeck/fixes-digitize
new c1453d8 FIX digitize replacement: also accept unsigned ints
new 085f5bd ENH: Add event histogram example
new 42399b9 FIX: Only baseline correct data
new 367f82f FIX: Fix test
new a68055f STY: Cleaner
new 1defcf7 FIX: No need for ion
new 3986900 FIX: Dont baseline correct
new 7feb4ca FIX: Fix debugs
new 130b61f FIX: Fix test
new 860f9ab FIX: Whats new
new f71af10 Merge pull request #1328 from Eric89GXL/event-hist
new 88ab365 Add EGI 256 layout
new 1c88331 FIX prewhitening bug
new 91f66dd update whats new
new 1127bdf Merge pull request #1339 from dengemann/ica_fix_whitening_bug
new e4e313b FIX: Refactor cov, projs, evoked, etc.
new 5864285 ENH: Move channels.py
new 1e67749 FIX: Imports
new d4b0211 FIX: Fix tests
new 1c4d576 FIX: Add to docs
new abe2793 EHN: add 2D image for evoked plots
new 4713b21 API : fix API for evoked.plot_image
new 9f97d74 FIX : get rid of plot_evoked examples (use evoked.plot)
new ec3a548 update what's new + reference
new 1202565 address comments
new 91f852b fix tests
new dd26d53 add interactive SSP plotting for plot_evoked_image
new 4fbd631 misc
new cb5ba26 FIX: Fix test
new 7477533 STY: Test titles
new 63aa10b EEG/CSP/BCI example
new 0050bb8 cleanup after rebase
new 432d64f topomaps with fieldtrip layout
new fc9ea27 fixed authorship
new e637181 removed regularized example
new c1535d7 running classifier
new 9e86c49 case insensitive channel matching
new 6a67458 dataset loader for the EEG-BCI data set
new c3e8d45 removed obsolete get_data function
new 754c64f added eegbci dataset to installer
new db0d6f1 removed accidental edit
new 6d7954f empty last line
new 3f60ca8 cosmetics
new 24c6746 fixed doctest
new 5180b07 more cosmetics
new baa7493 removed alternatives
new ca949de removed unused import
new 3cef4f2 fixed deprecated fiff namespace
new 6f84cac added EEGBCI path to known config types
new e03f6f0 added eegbci default location to .gitignore
new a037397 improved topo plots (colorbar, units)
new bdda4fe Added generic 10-5 EEG layout from Fieldtrip
new 926047d no need for .lay
new 9e259c5 ENH : move log option to CSP + cleanup example + update what's new + misc
new 6e89884 misc
new d4547ef cross-validation on smaller epoch
new 4a9481d FIX: Fix downloading problem
new 95e9e5c FIX: Downloading
new 9838a7d Merge pull request #1342 from Eric89GXL/fix-dl
new 3105b71 ENH/FIX Allow plotting a selection of source spectrogram
new 3cb1b72 FIX Unnecessarily wide time range
new 4aee808 FIX : hot fix for plot_source_spectrogram
new 1929b33 FIX: Fix multitaper computation
new 585d821 update classifier.py
new d1611ba cosmit
new 86e5d28 Merge pull request #1350 from dengemann/fix-psd-norm
new f62550f ENH: add plot scores function
new aba91d6 revamp ICA API + internals
new 3e8650c address discussion
new 4f6a24e cosmit
new 0eba4cc Merge pull request #1335 from dengemann/add_egi_lout
new 28b9fa0 fix spm example
new f44c975 comsit
new c168990 FIX random state
new d64435c Merge pull request #1319 from dengemann/revamp_ica
new 776e4f8 ENH: add EvokedArray class
new 49a8292 mostly tests, some function changes
new eb9386e addresses Alex's comments
new 31411a8 whats_new
new f490969 python_reference
new f2bd35a function and class exposure
new 268bb73 more for Alex, and unrelated authorship
new 189ff31 indentation and pep8
new eff9586 move create_info to mne.io.meas_info, and related
new d2a1858 missed one create_info import
new f35163b move _kind_dict to mne.io.meas_info, and related
new 92b4955 addresses Eric's python_refence comments
new abef435 more input checking, and python_reference
new b1a9d84 Merge pull request #1345 from adykstra/EvokedArray
new f03d323 ENH: dropping for EpochsArray
new 70e52fe update epochs.selection
new e100109 Merge pull request #1357 from dengemann/epochs_array_reject
new 3e7e638 FIX/ENH Improve comments and baselining in tf lcvm example
new b0cca52 FIX Compare time boundaries with tolerance in crop
new e491177 Revert "FIX Compare time boundaries with tolerance in crop"
new f6054ca FIX Numerical inaccuracies in time point comparisons
new 087a6e3 ENH/FIX Implement spectrogram padding in tf_dics
new 5b44627 Disable unnecessary baselining for tf_lcmv
new c45fc21 FIX tf_lcmv test in line with recent tf_lcmv changes
new 5f22fa2 Merge pull request #1363 from rgoj/fix-tf-lcmv-test
new 6b79aae ENH: Plot BEM contours on MRI
new 9d113fa FIX: Weird orientations of images fixed
new 3c3df2f ENH FIX: make plot_bem_contours -> _plot_mri_contours and change API
new 6735fa5 FIX : fix plot bem contours
new e2c6fa8 TEST FIX: Misc changes
new 8d3a6e4 cosmit
new 4ba2a71 Add CTPS method to detect artifacts
new 0b852ce add unit tests
new 974b73f actually add tests
new 4a2c3f5 generalize thresholding
new 504b223 cosmits
new 7b01ca9 update examples, fix make ecg bug, add reference
new 25b77e9 address discussion
new 610b263 test vectorization
new 3682ef2 cosmit
new 884bd2f 0.25 as ctps threshold
new f940b48 add whats new + address discussion
new de67e04 cosmits
new c857dfe cleanup maths
new 5c89696 make examples nicer
new 1cee5e9 cosmit
new 185b17d Merge pull request #1359 from dengemann/ctps
new d51b583 STY: replace Evoked(None) generator with EvokedArray
new b0a8691 same for epochs averaging
new a028ffa same for epochs averaging mod
new f17a4ae deepcopy to avoid changing epochs params
new 8abead1 change Evoked initialization
new 745453d more deepcopy of info
new 273d6aa FIX:basing issues Restart
new 6a220c1 FIX: add changes to test_source_estimate
new e9aa5d0 Merge pull request #1366 from dgwakeman/annot_semantics
new b4f8b3a ENH: Add hashing
new 42570f2 WIP ENH: Add hashing
new 4d6ba16 FIX: Unicode
new 1a97e53 FIX: Py3k sorting
new e3f2bdd FIX: Py3k
new e577f20 FIX: Tests
new 58dee8f FIX: Fix diff fun
new e01741f FIX: Fixes
new c4f715a FIX: More conservative default for object_hash
new 6a1ffa7 FIX: Fix encoding
new 9165a8b Merge pull request #1338 from Eric89GXL/hash
new cb44cd6 FIX averaging epochs not recreating times precisely
new 31337bf PEP8
new 2012051 Merge pull request #1371 from rgoj/fix-tf-beamforming-tests
new eaff390 FIX: Test pickling equivalence
new 68ce785 ENH: Store raw bytes instances instead of BytesIO
new 19d35fe FIX: Fix orig_fid_str
new c7f30f4 FIX: Fix tests
new 54b85da FIX: Better handling
new ebbbfff STY: Cleaner
new 3e7f023 FIX copy of times array
new 63a1568 PEP8
new 62d3abc Merge pull request #1375 from rgoj/fix-tf-beamforming-tests
new 17055af Merge pull request #1367 from Eric89GXL/pickling
new 03d95c2 FIX Unnecessary warnings about baselining in tf_lcmv
new d965a6b FIX bring back accidentally deleted line
new d3bd011 Merge pull request #1376 from rgoj/fix-tf-lcmv-baselining-warnings
new 189a50c Minor doc fix.
new 90b81b8 Merge pull request #1378 from pravsripad/doc_fixes
new df39e64 Resolving path problem and making code pep8 compilant
new 9987371 Taking user defined path to create examples and MNE directory, excluding escape character, including examples case handling to consider the case where MNE exsists but examples doesnt
new 7359e0f making it python 3.3 compitable by changing print to print()
new e1d3731 trying to create examples, then MNE directory at home, if that fails exception is raised which tells user a possible solution
new 7c45d94 removing examples from MNE directory in home directory
new 2be40d7 Adding Space to highlight different branching and Adding space after #
new 701126a changing MNE to MNE/mne_data
new 9500e30 Improve error handling.
new 9608dbe One data path to store them all.
new ddd27a5 Added backward compatibility and minor docs fix.
new 0bf5a4f Added MNE_DATA variable to MEGSIM and EEGBCI. Also backward compatible.
new feeabf6 misc
new 5da04fa moving MEGSIM examples to datasets folder
new 74bbdf7 misc
new f3ff682 update mailmap
new 9b5ebfc STY: raw.preload to match epochs
new 362c073 doc
new 7c522ee fix docstring
new a93648d WIP: add Forward class with repr
new d7f6835 addresses Eric's comments
new a3f166d doc
new 0120919 imports
new b79ef3f whats_new and python_reference
new e829e7f remove from reference, and remove import in mne.
new b91c7fe for Alex to pull and examine
new 949ad07 bug fix in picks
new 9a680a0 pep8, constants, picks bug update
new 241ffdc FIX: Add tests
new e22d067 Merge pull request #1380 from Eric89GXL/forward_class
new 41ab2ed WIP: raw file splitting
new 030f779 read split files, tests
new 9e583ef better test
new 75b1671 update whats new
new 5555ac9 fix Travis test..
new 565ae46 use number for files that don't have next fname
new c4df0ad FIX: Fix test
new dba5e3a Merge pull request #1381 from Eric89GXL/raw_split
new 840cd1f Regression examples
new a72697a Create regression module, factor out lstsq from examples
new c261ec7 Eliminate classes
new 65d10d9 docstrings
new 93459ec FIX: ols_epochs. The arg 'regressor_names' was assigned but never used. Instead 'names' is used throughout. Made it consistent to prevent errors.
new d365a28 ENH: addresses API/style-related comments
new 3b9ebe2 STY changes
new adb5893 ADD test, STY changes
new 2209a8c ENH: remove data simulation from test
new 5758d69 ENH: add desc
new 15828e7 cleanup regression
new 8688ae1 improve example + update doc
new 04eb71d address discussion
new 0893886 update reference
new 3d51efb improve fix example
new 0459922 improve fix example + address discussion
new 7e3490b fix save example file
new 87a00d1 clarify docstring
new 3094a7a fix links in what's new
new 66f179a fix indent
new 8d23895 ENH : first draft of point spread + cross talk functions
new 94162a4 ENH STY: Moved point_spread and cross_talk functions to inverse.py + PEP8 fixes
new 1a2cefd Addressed Alex' comments
new 57bc02d API + ENH : move ctf + psf functions + optim
new a38024a FIX : relative import
new 1e0d4fa cleanup
new e97ea94 nosetested PSFs/CTFs Improving PSF/CTF
new 1f516a5 cleanup CTF + PSF
new 9103278 more cleanup CTF + PSF
new 8d6372a API : remove singvals from output in PSF/CTF (was not tested/used anyway)
new 93c57ae update what's new + reference
new b7e1135 misc
new 5fed024 FIX : sample data not necesary
new 813324e remove \n
new 2322a67 missing .
new 2e917cb fix test
new c63b8b7 Merge pull request #1368 from agramfort/mne_resolution
new 505e7ed FIX : fix paths in tests
new 5058354 FIX : remove keepdims for old numpy
new 591e1dc FIX/ENH specify colormap when making parc
new f4c6245 Merge pull request #1387 from mluessi/fix_colors
new ab27332 ENH: add mask parameter to plot topomap
new a1e247a update topo example
new 1324062 ENH: add sensor markers instead
new 9912782 address discission + show ch names
new 98fbddb tiny viz improvement
new 4d9a521 simplify plot_sensor_permutation_test
new 7901229 ENH : better colorbar position in plot topomap
new 1b7db02 simplify more plot_sensor_permutation_test
new 7c1697a simplify even more plot_sensor_permutation_test
new 18aaecf ENH : improve scaling in topomap sizes
new f93194a typo
new da84d24 fix test
new 1e27728 update whats new
new 67cb479 EvokedArray
new 98431af fix what's new
new e5c4219 ENH: docstring for spectral_connectivity
new c2f1865 Merge pull request #1392 from mluessi/enh_spectral_connectivity_docstr
new 5e3a904 ENH RawKIT: error for invalid stim channel
new 10c800e ENH Kit2Fiff-GUI: allow custom stim channels
new 081588d TEST Kit2Fiff-GUI
new 99560a1 TEST Kit2Fiff-GUI
new 95b7d81 Merge pull request #1396 from christianbrodbeck/gui-chs
new b935fa9 ENH: add infomax
new e4719e3 address discussion
new 9832c6f unicode
new c5686fb fix import errors and typos
new 9eb02e1 address discussion
new 6d2326f sum
new 473c5db checkpioint
new 36b0a4f rewrite Infomax
new b2605d3 cosmits
new dfcc1ec ENH: fix infomax + deprecate + generalzie API
new d47f694 cosmits
new 5cc0e84 py3k fixes
new bb23112 more py3k
new 16b4c29 silence tests
new b70348b add infomax test
new 289eef3 remove infomax API test
new 16b5021 random state
new 387cfa1 cleanup infomax tests
new 2ce55e3 mode debugging on tests
new a195496 FIX infomax
new cf49c2e address discussion
new 2f22478 require sklearn
new b2a73bc whats new + reference
new 98dd271 clenaup
new 8dea927 Signs bug at infomax
new 49b04a8 cleanup infomax
new b0a93fd FIX: Add show parameter and return figure handle
new c8b67bd FIX: Make backward compatible by returning both perc and fig
new fd9fafc FIX: Decprecation warning + drop_log_stats function
new 27ce573 FIX TEST: Addressing Alex's comments + tests
new 1de03dd Addressing minor comments from Alex
new 2af2ee8 Fixing PEP8
new 4fff517 Merge pull request #1398 from mainakjas/fix_drop_log
new fbe2c0d ENH: improve examples, allow for detecting EEG by CTPS
new e3316b5 address discussion + doc
new 048bcb9 Merge pull request #1399 from dengemann/main_ica_eeg
new 6710d20 first pass over new interpolation
new 53c606a refactor to allow for oldstyle plots
new d64695c finalize and populate
new 51a89bf fixes + doc
new e03f32c fix SSP topomap
new a5788dc fixes + contours params
new 0848791 var fixes
new 066bfe8 whats new
new 3925fb0 add Alex to whats new as mental support
new 924c89f Merge pull request #1402 from dengemann/topoplot_interp
new 56f6b7c DOC : nicer fig layout for topo
new c9ea8d6 ENH : autoscale figsize for treillis plots
new a03066a BUG: sparse_morph with no dipole in one hemisphere
new 1f321a4 work on agramfort's comments
new 1ed2eb6 typo
new b45d2d4 Add image interpolation parameter to plot_topomap and various fixes
new c87eb04 ENH: Allow plot_events to work without sfreq
new 30dd60c Add test for plot_events
new 480ffee FIX warnings from plot_drop_log
new 12ba272 Merge pull request #1405 from fraimondo/topo_interp
new 50352a6 Update Doc
new 37e0ff2 Merge pull request #1406 from mainakjas/fix_plot_events
new 1a9fdb1 FIX: Fix email
new 1b5dc2a FIX: Denis
new 03e0251 FIX: Emails [ci skip]
new 04c7294 Merge pull request #1408 from Eric89GXL/email
new 2f6fe34 expose more plt.psd params
new ee0a2a5 fix overlap
new 84cba96 add docstring
new 7d4795a Fix docstring for ICA.apply(copy=False)
new 40abff3 Merge pull request #1411 from maedoc/fix-ica-copy-doc
new bf61b38 Add metadata to RawBTi to enable crop method
new 9d1a4f1 Add test for cropping raw BTi
new 1bd3b5b missing viz params
new 71037c9 fix typo
new 9d2deea Merge pull request #1413 from dengemann/missing_params
new 7c4e2cb Merge pull request #1409 from dengemann/psd_params
new 1096b2a Merge pull request #1412 from maedoc/bti-enable-crop
new afda1d4 add new skiptest for filedownloading
new 5edc7b1 cleanup
new 0dd1c93 fix test
new 13e1a99 Merge pull request #1415 from dengemann/skip_network
new 77658fc ENH : first pass on new tfr code
new ec6b23d making progress on AverageTFR
new cca90d5 refactor
new 89883c2 deprecate induced_power function
new d08e8f7 deprecate induced_power function
new 09548d3 TST : update TFR test
new e664628 FIX : compat partial
new a7f9680 ENH : add nave to AverageTFR
new 2a5cba2 ENH : add plot_topomap to AverageTFR
new 1021e2e ENH : add somato dataset
new aff60d6 ENH : improve TFR plotting
new d92f06d rename example
new c2b5c44 change default cmap
new cc6194c API : deprecating old TFR plot methods
new b7c971c py3k fixes
new 91e3786 ENH : add apply_baseline method to TFR
new ecb5f64 FIX : use n_jobs=1 in examples
new a8530e1 too fast renaming
new 1d458f5 add cache rm to make clean
new 6193eb0 fix path
new 50974ba FIX : address reviews
new 39d685d DOC : missing docstring
new 598965d cosmit in plot_ica_components
new f5a568b remove old example
new 74ccb5c ENH : add axes param to plot_tfr_topomap + simplify code (thanks @dengemann)
new 8235882 update what's new + reference
new c0868a9 FIX : return fig not axes
new 6cdb0b5 cleanup doc strings
new 53661c9 update what's new
new 999ceaa ENH: y ticks for only event_ids that exist
new 19c932c ENH : equal spacing in plot_events
new 26be8b2 ENH: vmin vmax ICA topo + misc fixes
new 4629183 make topomasking perfect
new 7025db0 all bilinear
new 224de76 fix delayed ssp
new 896a576 revert colorbar to True in plot_tfr_topomap
new 6ab87d8 FIX: Add show param to plot_evoked_topomap
new 34810e3 Merge pull request #1419 from mainakjas/fix_plot_topomap
new b2879d7 FIX : use gca and not plt
new 04d7772 cleanup unused variables
new 5c1d64b API : refactor huge viz.py to have a proper module (still need to update tests)
new 0883e0e split viz tests
new e096250 remove old test_viz
new 1d3a663 update setup.py
new d71e497 Merge pull request #1420 from agramfort/split_viz
new 90603cc FIX: Use None for tmin to take the latest samples available in the buffer
new 803d46d TESTS: Use subprocess to do tests
new 5069aa9 fix warning and expose source parameter
new d17341e remove nitpick for @agramfort
new 7db6339 realpath
new 9106f64 Merge pull request #1424 from dengemann/fix_plot_trans_single_layer
new 247fb69 FIX: Fewer warnings
new fbb98b8 FIX: Network for realtime test
new 0f51de0 TESTS: Fix travis by moving neuromag2ft inside decorator
new a603a17 Merge pull request #1425 from Eric89GXL/test-warn
new d8d2931 Merge pull request #1422 from mainakjas/ft_measurement_latest
new 2ae9e88 make return figure if axes is None
new 26950f6 return figure
new b5412fa really return figure
new 40004df ENH: Remove nibabel req for vol src space
new 84fabef FIX: Fix import
new 75e3964 STY: Better comments
new 71d4d6e Merge pull request #1426 from dengemann/fix_plot_events
new d75000d update setup to have clear test output
new 5422250 speed up viz code
new 7375263 more speed up viz code
new 55ab8e1 more speed up viz code + cleanup old test
new cd28d61 more speed up viz code
new 3d55837 more more speed up viz code
new 8639a1e allow equal_spacing or not in plot_events
new cc38024 Merge pull request #1427 from Eric89GXL/no-nib
new 67d0418 handle matplotlib bug in plot topomap
new 525d90e better comment
new b400fb8 Merge pull request #1432 from dengemann/fix_topomap
new ed5ac32 fix topomap impoer
new 01d11c4 ENH: Add HDF5 r/w support
new 4f10a8b ENH: H5 support for STCs
new f68b215 STY: Cleaner
new a7c9909 FIX: Fix tests
new eb2c7b4 ENH: Lower sample data reqs
new a5522ed ENH: allow to index epochs by tuple
new 506fee1 fix indent
new eb76265 Merge pull request #1435 from dengemann/epochs_tuples
new 55bddd3 FIX: Fix coverage
new 7efb69b Merge pull request #1437 from Eric89GXL/fix-cov
new ae3b899 ENH: Add subject name
new 8a6ab84 Merge pull request #1433 from Eric89GXL/hdf5
new 1d8f4d2 Update whats_new.rst
new 34ed0b4 ENH: Add repr for inverse
new 2091040 FIX: Inverse -> InverseOperator
new fb68431 FIX: Update missing InverseOperators
new 30312d5 Add TEST + todo function
new ec71720 attempt to fix coverage on buildbot
new 8cb26b7 ENH : draft of mne report command
new 09a3f72 ENH : start to use tempita
new b80e63c ENH: Added function to recursively search directory
new e5eade0 FIX STY: Use read_evokeds() instead of read_evoked() + stylistic changes
new 3f811b9 ENH: Extended support for -cov.fif files by displaying covariance matrix
new c2279b3 ENH: Extended support for -raw.fif files by printing the info repr
new 67d107a ENH STY: Add bootstrap buttons for toggling + cosmits
new 061722a ENH: Added table of contents
new 5054441 ENH STY: Bad filenames in red + toggling for table lists + PEP8 fixes
new 3ad89ec ENH: Added navbar + footer + better button toggling + open report in a browser when generated + removed deprecated functions + link to TOC
new 7f6a894 ENH: Move TOC to left
new 5710b54 ENH: Add plot_trans and optparser
new 9fda5ed ENH: Added plot_bem() and rebased mne.io.read_evokeds -> mne.read_evokeds
new 843b84d FIX: Embed js/css in html to work without internet
new da87439 MISC FIXES: 1. Remove redundant function + include T1.mgz as accpetable filenames + show one view for BEM contours 2. Remove extraneous bullets in TOC and add scrollbar 3. finds T1.mgz only from the subjects directory 4. Remove build_tools + specify PIL in import 5. Sampling frequency read in from info file 6. Fix t1 global_id
new 3dfac5e ENH: Create a python interface for MNE Report
new 979155d FIX: Add TOC to the html list in the end + robust checking for render_trans
new 53badc7 FIX: Nested imports + misc. API modifications
new 7eae038 ENH: Add sliders to BEM contours
new c0c1539 ENH: Print repr for forward files
new ec3ad19 ENH: Add plot_drop_log
new 5d25148 ENH: Nicer TOC
new 944e8d2 Add tempita
new fb2d968 FIX: Combine BEM and T1.mgz + show every two slices
new da49c7a FIX: top margin + initiate BEM in the center slice
new 0c53e8a ENH: Add interactivity to plot_events using mpld3
new 1fd2413 FIX: more memory efficient + private functions + verbose option
new 0103730 ENH: Add --no-browser option
new 4884bb1 FIX: Make mpld3 interactivity work without internet
new 88885e6 FIX DOC: Update whats_new + StringIO -> BytesIO and other py3 compat issues
new 717b136 ENH: Add --overwrite option
new a3776a7 FIX: Tempita doctest errors on Travis + minify js/css
new 8940d04 TESTS: Add tests for mne report
new e433843 DOC: Update python_reference.rst and add mne.report to it
new 003152c FIX: Address Alex's comments
new e350516 FIX: add interactive param to add_section + allow more filetypes
new 51c9d5a FIX: Make Travis happy by updating setup.py
new 8cdb76e FIX: Don't hide caption when clicking TOC + make info_fname optional
new c44e00a ENH FIX: Render buttons for only sections rendered + allow adding to existing section
new 0d783fe Misc Fixes
new e4a2c2b FIX: remove redundant text parameter and use str.capitalize() instead
new 6d7bd0e Make test pass without mpld3. Later use requires_mpld3
new 994e41d ENH: Order plots by sections (in order of appearance / not alphabetic)
new 415e5a4 FIX: Misc Fixes
new 94e64a6 ENH: Use tempita default parameters to set interactivity to False by default
new 2046c72 ENH: _render_trans reloaded
new 8ee880a ENH: Add topomap for evoked object
new faffe51 FIX: Remove interactivity. yticklabels not rendered correctly
new 1a9e853 FIX: render figs in add_section as separate elements of the self.html list
new 324cdb6 FIX: Allow multiple saves and give data_path warning only if fname is None
new 6157283 TESTS: Improve coverage + timing of tests using _check_report_mode decorator
new 3cefaf6 FIX: Nasty hard-coded links when saving from Chrome bug
new 6095330 TEST: Fix tight_layout warnings
new b1599f0 ENH : fix tempita for py3k
new 419217a FIX : use input for py3k
new 4095e94 fix base64
new dddb61a FIX : images on py3k
new 59a6f24 FIX: add tempita to setup
new 5ee38b5 FIX tempita doctest errors
new b6311f9 ENH: add support for inverse operator
new 7520f70 CSS tweaks to make sure the TOC text is rendered correctly
new 8fb0e90 hot fix for py3k
new 4161c56 next hot fix for py3k
new cfe8c3b allow for non-list input to add_section
new 55f4d58 fix assert raises
new 7ee2e93 clean up
new 173558c2 Merge pull request #1438 from dengemann/report_api
new 45ed280 conda package is called pytables
new aa46253 FIX: Fix unicode/ascii for Py3k HDF5
new cf571de Merge pull request #1441 from Eric89GXL/fix-hdf5
new e2ceb2b FIX: Allow section names to have spaces in them
new d43f97f Merge pull request #1439 from mainakjas/mne-report-fixwhitespace
new e3369dd overwrite in setup src for buildbot
new 07fa4cc FIX: Remove print
new 9e5c0f6 ENH: Start using joblibs
new 38802fd ENH: add n_jobs for MRI
new 97c58f7 ENH: Use np.array_split to make jobs CPU bound, not IO bound
new 05971e4 ENH: Create VALID_EXTENSION global variable
new c24ea83 FIX: Cleaner flattening + unique value finding
new e34b94a DOC: Add comments to private functions.
new 22a4e41 FIX: Whitespace issue
new bcc4572 Merge pull request #1440 from mainakjas/mne-report-n_jobs
new b3ad00c ENH: Natural section ordering
new cd6c2e2 FIX: Finally fix all whitespace issues
new e159376 Merge pull request #1445 from mainakjas/mne-report_order
new 271e11b FIX: sectionlabels must be saved too
new 04b56a2 Merge pull request #1447 from mainakjas/report_fixsaves
new 73a75ad FIX/ENH: add more rank reduction verbosity and fix bad conditionals preventing exact selection of PCA components on applying ICA
new fe0aa93 add new corener case + speedup tests
new bb8c9c3 Merge pull request #1448 from dengemann/ica_maint
new e328db6 FIX: Minor fixes
new d548ee6 Merge pull request #1450 from Eric89GXL/fix-dist
new 66fbaef various cleanups + fixes
new 4965097 Merge pull request #1455 from dengemann/release_misc
new 91e3f41 ENH: update forward example with cambridge ipynb code
new bd0b069 fix plottingh
new d68ee43 fix typos in ICA example
new c5c7c4d fix email address
new 5c8165a Cosmits
new 5fe76b4 Merge pull request #12 from dengemann/tb-cosmits
new 17cea43 FIX : plot_mne_crosstalk_function
new 0f392c3 Merge pull request #1456 from dengemann/release_misc
new d7082cf more remaining NFFT
new b7d0bc7 Correct EGI layout
new dddf2fe FIX: remove automatic closing of figures in add_section
new ecf515b Merge pull request #1460 from mainakjas/fix_plot_close
new 07757be more colormap fixes
new eb03846 fix fork fig close
new bd18440 Merge pull request #1459 from agramfort/nfft
new 73d16cd Merge pull request #1461 from dengemann/release_misc
new 9909732 FIX: Fix tests
new 0e759fa Allow all kinds of strings as captions
new 2951d0a Merge pull request #1465 from Eric89GXL/fix-tests
new 2d70733 DOC: Add MNE report tutorial
new 699e01b FIX: bug introduced when making parallel. info not compulsory
new 2b53f70 FIX: Py3k
new 9900567 Merge pull request #1467 from Eric89GXL/fix-again
new 76cb3d9 FIX : plot_from_raw_to_multiple_epochs_to_evoked example
new e0eee20 DOC: Add link to the mne report tutorial in the mne-python page
new 725014d Merge pull request #1466 from mainakjas/report_fix_captions
new 884fda2 DOCTESTS: fix errors and simplify tutorial
new 9bba06e Merge pull request #1468 from mainakjas/report_fix_doctests
new 5e9799a FIX: skip doctests for lines that require xserver
new 7c4ecb8 Merge pull request #1469 from mainakjas/report_xserver_issues
new be2c617 FIX: add button to collapse navbar buttons
new 8e66091 fix doctest
new 8b7796f Merge pull request #1470 from mainakjas/report_collapse_navbuttons
new 4f4261c update what's new + mailmap
new d589985 update version number
new fa7c3b9 update gitignore
new f2b0ad1 update years in license.txt
new 4bf3c59 doc fixes
new 2baea40 FIX : raw.plot works now with ref MEG and CTF data
new 880a2c5 update version to 0.8.1
new 498812a remove URLError
new e4296cd update version to 0.8.2
new 7b2002a FIX DOC: *.annot I/O in reference
new bfa6641 DOC fixes for realtime and decoding module
new dfb4baf bugfix for cropping data in tfr plots
new 0b7ed7c FIX : make pick + drop work for TFR
new 8fec724 ENH : add support for equalize_channels in AverageTFR
new 82dced0 fix import
new 2de0275 FIX : bug tfr_morlet on single epoch
new fc64a1f v0.8.3
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