[med-svn] r20179 - in trunk/packages/staden-io-lib/tags: . 1.14.3-1/debian
Charles Plessy
plessy at moszumanska.debian.org
Thu Oct 1 13:28:38 UTC 2015
Author: plessy
Date: 2015-10-01 13:28:38 +0000 (Thu, 01 Oct 2015)
New Revision: 20179
Added:
trunk/packages/staden-io-lib/tags/1.14.3-1/
trunk/packages/staden-io-lib/tags/1.14.3-1/debian/changelog
trunk/packages/staden-io-lib/tags/1.14.3-1/debian/copyright
Removed:
trunk/packages/staden-io-lib/tags/1.14.3-1/debian/changelog
trunk/packages/staden-io-lib/tags/1.14.3-1/debian/copyright
Log:
[svn-buildpackage] Tagging staden-io-lib 1.14.3-1
Deleted: trunk/packages/staden-io-lib/tags/1.14.3-1/debian/changelog
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/changelog 2015-10-01 09:21:14 UTC (rev 20177)
+++ trunk/packages/staden-io-lib/tags/1.14.3-1/debian/changelog 2015-10-01 13:28:38 UTC (rev 20179)
@@ -1,177 +0,0 @@
-staden-io-lib (1.14.2-1) unstable; urgency=medium
-
- [ Charles Plessy ]
- * Removed debian/libstaden-read1.symbols_old (that is what VCSes
- are for).
-
- [ Andreas Tille ]
- * New upstream version
- * New soname - so change library package name
-
- -- Andreas Tille <tille at debian.org> Tue, 22 Sep 2015 20:27:29 +0200
-
-staden-io-lib (1.14.0-1) unstable; urgency=medium
-
- * New upstream version
- * Deactivated libstaden-read1.symbols for the moment by renaming
- it to libstaden-read1.symbols_old (feel free to maintain this file
- but in this form the package does not build)
- * d/copyright: remove paragraph about not existing file
-
- -- Andreas Tille <tille at debian.org> Mon, 27 Jul 2015 12:46:23 +0200
-
-staden-io-lib (1.13.10-1) unstable; urgency=medium
-
- [ Andreas Tille ]
- * New upstream version
- * cme fix dpkg-control
-
- [ Charles Plessy ]
- * Multi-Arch: same.
- * Unfuzzy debian/patches/pathmax.patch.
- * Update symbols file.
-
- -- Andreas Tille <tille at debian.org> Sun, 05 Jul 2015 16:34:13 +0200
-
-staden-io-lib (1.13.7-1) unstable; urgency=medium
-
- * New upstream release.
- * Removed debian/patches/fix-bam-read.patch, applied upstream.
- * debian/libstaden-read1.symbols: updated. Some symbols are missing but
- it is in area of code that are considered beta (in my understanding).
-
- -- Charles Plessy <plessy at debian.org> Fri, 20 Jun 2014 08:04:00 +0900
-
-staden-io-lib (1.13.5-3) unstable; urgency=medium
-
- * debian/rules: fix permissions in arch=all package only when
- it is really built
- Closes: #745692
-
- -- Andreas Tille <tille at debian.org> Thu, 24 Apr 2014 08:16:30 +0200
-
-staden-io-lib (1.13.5-2) unstable; urgency=medium
-
- * use dh-autoreconf
- Closes: 744664
- * Add autopkgtest using new staden-io-lib-examples package
-
- -- Andreas Tille <tille at debian.org> Mon, 14 Apr 2014 13:08:48 +0200
-
-staden-io-lib (1.13.5-1.1) unstable; urgency=medium
-
- * Non-maintainer upload.
- * Fix io_lib/bam.c read
- Patch by Aleksandar Zlicic
- Add fix-bam-read.patch
- Closes: #736565
-
- -- Anibal Monsalve Salazar <anibal at debian.org> Tue, 01 Apr 2014 04:19:52 +0100
-
-staden-io-lib (1.13.5-1) unstable; urgency=medium
-
- * New upstream release.
- * debian/libstaden-read1.symbols: updated symbols.
- * debian/patches/pathmax.patch: refreshed.
- * debian/patches/fix_bufferoverflow.patch: removed (applied upstream).
-
- -- Charles Plessy <plessy at debian.org> Sat, 15 Mar 2014 12:05:00 +0900
-
-staden-io-lib (1.13.3-2) unstable; urgency=medium
-
- * debian/patches/fix_bufferoverflow.patch: Fix buffer overflow
- Thanks to James Bonfield <jkb at sanger.ac.uk> (upstream) for the patch.
- Closes: #729276
-
- -- Andreas Tille <tille at debian.org> Thu, 12 Dec 2013 13:42:21 +0100
-
-staden-io-lib (1.13.3-1) unstable; urgency=low
-
- * New upstream release. Closes: #715753, #715877, #715878, #715879, #715953.
-
- [ Adam Conrad ]
- * Use dh_autotools-dev to update config.{sub,guess} for new ports.
-
- [ Charles Plessy ]
- * Updated symbols file: some symbols have been removed, but they relate
- to obsolete code that is not expected to be used.
- * Conforms to Policy 3.9.5.
-
- -- Charles Plessy <plessy at debian.org> Sat, 30 Nov 2013 18:11:11 +0900
-
-staden-io-lib (1.13.2-3) unstable; urgency=low
-
- * debian/patches: add patch to build on hurd_i386
- * no need to remove package from mips anymore (Closes: #726875)
-
- -- Thorsten Alteholz <debian at alteholz.de> Mon, 21 Oct 2013 18:10:59 +0200
-
-staden-io-lib (1.13.2-2) unstable; urgency=low
-
- * Restore and update symbols file debian/libstaden-read1.symbols.
-
- -- Charles Plessy <plessy at debian.org> Sat, 10 Aug 2013 12:10:59 +0900
-
-staden-io-lib (1.13.2-1) unstable; urgency=low
-
- [ Charles Plessy ]
- * New upstream release (Closes: #710227).
- * Use Debhelper 9.
- * Removed obsolete DM-Upload-Allowed field.
- * Machine-readable Debian copyright file.
- * Normalised debian/control with config-model-edit.
- * New symbols for libstaden-read1.
- * Search for libraries in tmp/usr/lib/x86_64-linux-gnu/.
- * Removed Breaks and Replaces (staden-io-lib-utils) satisfied in oldstable.
- * Normalised VCS URLs following Lintian's standard.
-
- [ Andreas Tille ]
- * debian/source/format: 3.0 (quilt)
- * debian/control: Build-Depends libcurl4-gnutls-dev
- Closes: #710243
- * debian/libstaden-read1.symbols: Deleted because it simply breaks build.
- * debian/rules: Make use of d-shlibs which should help closing bug
- #710225 because it raises a flag if there is a new ABI
- * provide some help2man created manpages
-
- -- Andreas Tille <tille at debian.org> Wed, 07 Aug 2013 14:31:36 +0200
-
-staden-io-lib (1.12.4-1) unstable; urgency=low
-
- * New upstream release, with changes on endianness detection
- (closes: #579239).
- * Build on all architectures, (debian/control).
- * Added library symbols file (debian/libstaden-read1.symbols).
- * Incremented Standards-Version to reflect conformance with Policy 3.9.1
- (debian/control, no changes needed).
- * Moved io_lib-config from staden-io-lib-utils to libstaden-read-dev
- (debian/rules, debian/control).
-
- -- Charles Plessy <plessy at debian.org> Tue, 27 Jul 2010 21:07:57 +0900
-
-staden-io-lib (1.12.2-2) unstable; urgency=low
-
- * Restrict staden-io-lib to i386 and amd64 platforms, which are the
- only ones where it is known to work and be used (debian/control).
- * Provide a patch for helping people interested in building this
- package on other architectures (debian/endianness.patch).
- * Incremented Standards-Version to reflect conformance with Policy 3.8.4
- (debian/control, no changes needed).
-
- -- Charles Plessy <plessy at debian.org> Sat, 22 May 2010 22:50:35 +0900
-
-staden-io-lib (1.12.2-1) unstable; urgency=low
-
- * New upstream release: extra options in srf2fastq and API changes in
- HashTable code.
- * Removed the libtool ‘.la’ library (debian/staden-read-dev.install).
- * Incremented Standards-Version to reflect conformance with Policy 3.8.3
- (no changes needed).
-
- -- Charles Plessy <plessy at debian.org> Sun, 17 Jan 2010 22:09:42 +0900
-
-staden-io-lib (1.12.1-1) unstable; urgency=low
-
- * Initial release (Closes: #530753)
-
- -- Charles Plessy <plessy at debian.org> Mon, 10 Aug 2009 23:32:59 +0900
Copied: trunk/packages/staden-io-lib/tags/1.14.3-1/debian/changelog (from rev 20178, trunk/packages/staden-io-lib/trunk/debian/changelog)
===================================================================
--- trunk/packages/staden-io-lib/tags/1.14.3-1/debian/changelog (rev 0)
+++ trunk/packages/staden-io-lib/tags/1.14.3-1/debian/changelog 2015-10-01 13:28:38 UTC (rev 20179)
@@ -0,0 +1,183 @@
+staden-io-lib (1.14.3-1) unstable; urgency=medium
+
+ * New upstream release.
+
+ -- Charles Plessy <plessy at debian.org> Thu, 01 Oct 2015 22:13:09 +0900
+
+staden-io-lib (1.14.2-1) unstable; urgency=medium
+
+ [ Charles Plessy ]
+ * Removed debian/libstaden-read1.symbols_old (that is what VCSes
+ are for).
+
+ [ Andreas Tille ]
+ * New upstream version
+ * New soname - so change library package name
+
+ -- Andreas Tille <tille at debian.org> Tue, 22 Sep 2015 20:27:29 +0200
+
+staden-io-lib (1.14.0-1) unstable; urgency=medium
+
+ * New upstream version
+ * Deactivated libstaden-read1.symbols for the moment by renaming
+ it to libstaden-read1.symbols_old (feel free to maintain this file
+ but in this form the package does not build)
+ * d/copyright: remove paragraph about not existing file
+
+ -- Andreas Tille <tille at debian.org> Mon, 27 Jul 2015 12:46:23 +0200
+
+staden-io-lib (1.13.10-1) unstable; urgency=medium
+
+ [ Andreas Tille ]
+ * New upstream version
+ * cme fix dpkg-control
+
+ [ Charles Plessy ]
+ * Multi-Arch: same.
+ * Unfuzzy debian/patches/pathmax.patch.
+ * Update symbols file.
+
+ -- Andreas Tille <tille at debian.org> Sun, 05 Jul 2015 16:34:13 +0200
+
+staden-io-lib (1.13.7-1) unstable; urgency=medium
+
+ * New upstream release.
+ * Removed debian/patches/fix-bam-read.patch, applied upstream.
+ * debian/libstaden-read1.symbols: updated. Some symbols are missing but
+ it is in area of code that are considered beta (in my understanding).
+
+ -- Charles Plessy <plessy at debian.org> Fri, 20 Jun 2014 08:04:00 +0900
+
+staden-io-lib (1.13.5-3) unstable; urgency=medium
+
+ * debian/rules: fix permissions in arch=all package only when
+ it is really built
+ Closes: #745692
+
+ -- Andreas Tille <tille at debian.org> Thu, 24 Apr 2014 08:16:30 +0200
+
+staden-io-lib (1.13.5-2) unstable; urgency=medium
+
+ * use dh-autoreconf
+ Closes: 744664
+ * Add autopkgtest using new staden-io-lib-examples package
+
+ -- Andreas Tille <tille at debian.org> Mon, 14 Apr 2014 13:08:48 +0200
+
+staden-io-lib (1.13.5-1.1) unstable; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix io_lib/bam.c read
+ Patch by Aleksandar Zlicic
+ Add fix-bam-read.patch
+ Closes: #736565
+
+ -- Anibal Monsalve Salazar <anibal at debian.org> Tue, 01 Apr 2014 04:19:52 +0100
+
+staden-io-lib (1.13.5-1) unstable; urgency=medium
+
+ * New upstream release.
+ * debian/libstaden-read1.symbols: updated symbols.
+ * debian/patches/pathmax.patch: refreshed.
+ * debian/patches/fix_bufferoverflow.patch: removed (applied upstream).
+
+ -- Charles Plessy <plessy at debian.org> Sat, 15 Mar 2014 12:05:00 +0900
+
+staden-io-lib (1.13.3-2) unstable; urgency=medium
+
+ * debian/patches/fix_bufferoverflow.patch: Fix buffer overflow
+ Thanks to James Bonfield <jkb at sanger.ac.uk> (upstream) for the patch.
+ Closes: #729276
+
+ -- Andreas Tille <tille at debian.org> Thu, 12 Dec 2013 13:42:21 +0100
+
+staden-io-lib (1.13.3-1) unstable; urgency=low
+
+ * New upstream release. Closes: #715753, #715877, #715878, #715879, #715953.
+
+ [ Adam Conrad ]
+ * Use dh_autotools-dev to update config.{sub,guess} for new ports.
+
+ [ Charles Plessy ]
+ * Updated symbols file: some symbols have been removed, but they relate
+ to obsolete code that is not expected to be used.
+ * Conforms to Policy 3.9.5.
+
+ -- Charles Plessy <plessy at debian.org> Sat, 30 Nov 2013 18:11:11 +0900
+
+staden-io-lib (1.13.2-3) unstable; urgency=low
+
+ * debian/patches: add patch to build on hurd_i386
+ * no need to remove package from mips anymore (Closes: #726875)
+
+ -- Thorsten Alteholz <debian at alteholz.de> Mon, 21 Oct 2013 18:10:59 +0200
+
+staden-io-lib (1.13.2-2) unstable; urgency=low
+
+ * Restore and update symbols file debian/libstaden-read1.symbols.
+
+ -- Charles Plessy <plessy at debian.org> Sat, 10 Aug 2013 12:10:59 +0900
+
+staden-io-lib (1.13.2-1) unstable; urgency=low
+
+ [ Charles Plessy ]
+ * New upstream release (Closes: #710227).
+ * Use Debhelper 9.
+ * Removed obsolete DM-Upload-Allowed field.
+ * Machine-readable Debian copyright file.
+ * Normalised debian/control with config-model-edit.
+ * New symbols for libstaden-read1.
+ * Search for libraries in tmp/usr/lib/x86_64-linux-gnu/.
+ * Removed Breaks and Replaces (staden-io-lib-utils) satisfied in oldstable.
+ * Normalised VCS URLs following Lintian's standard.
+
+ [ Andreas Tille ]
+ * debian/source/format: 3.0 (quilt)
+ * debian/control: Build-Depends libcurl4-gnutls-dev
+ Closes: #710243
+ * debian/libstaden-read1.symbols: Deleted because it simply breaks build.
+ * debian/rules: Make use of d-shlibs which should help closing bug
+ #710225 because it raises a flag if there is a new ABI
+ * provide some help2man created manpages
+
+ -- Andreas Tille <tille at debian.org> Wed, 07 Aug 2013 14:31:36 +0200
+
+staden-io-lib (1.12.4-1) unstable; urgency=low
+
+ * New upstream release, with changes on endianness detection
+ (closes: #579239).
+ * Build on all architectures, (debian/control).
+ * Added library symbols file (debian/libstaden-read1.symbols).
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.1
+ (debian/control, no changes needed).
+ * Moved io_lib-config from staden-io-lib-utils to libstaden-read-dev
+ (debian/rules, debian/control).
+
+ -- Charles Plessy <plessy at debian.org> Tue, 27 Jul 2010 21:07:57 +0900
+
+staden-io-lib (1.12.2-2) unstable; urgency=low
+
+ * Restrict staden-io-lib to i386 and amd64 platforms, which are the
+ only ones where it is known to work and be used (debian/control).
+ * Provide a patch for helping people interested in building this
+ package on other architectures (debian/endianness.patch).
+ * Incremented Standards-Version to reflect conformance with Policy 3.8.4
+ (debian/control, no changes needed).
+
+ -- Charles Plessy <plessy at debian.org> Sat, 22 May 2010 22:50:35 +0900
+
+staden-io-lib (1.12.2-1) unstable; urgency=low
+
+ * New upstream release: extra options in srf2fastq and API changes in
+ HashTable code.
+ * Removed the libtool ‘.la’ library (debian/staden-read-dev.install).
+ * Incremented Standards-Version to reflect conformance with Policy 3.8.3
+ (no changes needed).
+
+ -- Charles Plessy <plessy at debian.org> Sun, 17 Jan 2010 22:09:42 +0900
+
+staden-io-lib (1.12.1-1) unstable; urgency=low
+
+ * Initial release (Closes: #530753)
+
+ -- Charles Plessy <plessy at debian.org> Mon, 10 Aug 2009 23:32:59 +0900
Deleted: trunk/packages/staden-io-lib/tags/1.14.3-1/debian/copyright
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/copyright 2015-10-01 09:21:14 UTC (rev 20177)
+++ trunk/packages/staden-io-lib/tags/1.14.3-1/debian/copyright 2015-10-01 13:28:38 UTC (rev 20179)
@@ -1,163 +0,0 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Source: http://qa.debian.org/watch/sf.php/staden/io_lib-1.13.7.tar.gz
-
-Files: *
-Copyright: © 1994 Medical Research Council
- © Genome Research Ltd (GRL)
-License: GRL or MRC
-Upstream-Comment: Newer files and changes are copyright Genome Research Ltd
- using the following compatible BSD licence. Disentangling which is which is
- somewhat tricky, but it's sufficient to say that work in the CVS/SVN tree from
- August 2002 will be bound by the GRL licence instead.
-
-Files: io_lib/binning.h
-Copyright: © 2014 Genome Research Ltd.
-License: GRL-new
-
-Files: io_lib/rANS_static.c
-Copyright: public domain parts by Fabian 'ryg' Giesen
- © 2014 Genome Research Ltd.
-License: GRL-new
-
-Files: io_lib/open_trace_file.c
-Copyright: © 2001-2005 454 Life Sciences Corporation
-License: GRL or MRC, and 454
- This file contains some source code owned by 454 Life Sciences Corporation.
-
-Files: io_lib/sff.c
-Copyright: © Genome Research Limited (GRL)
- © 2001-2005 454 Life Sciences Corporation.
-License: GRL and 454
- This file contains some extracts from a file owened by the 454 Life Sciences Corporation.
-
-Files: io_lib/md5.*
-Copyright: see License
-License: says-public-domain
- This is an OpenSSL-compatible implementation of the RSA Data Security, Inc.
- MD5 Message-Digest Algorithm (RFC 1321).
- .
- Homepage:
- http://openwall.info/wiki/people/solar/software/public-domain-source-code/md5
- .
- Author:
- Alexander Peslyak, better known as Solar Designer <solar at openwall.com>
- .
- This software was written by Alexander Peslyak in 2001. No copyright is
- claimed, and the software is hereby placed in the public domain.
- In case this attempt to disclaim copyright and place the software in the
- public domain is deemed null and void, then the software is
- Copyright (c) 2001 Alexander Peslyak and it is hereby released to the
- general public under the following terms:
- .
- Redistribution and use in source and binary forms, with or without
- modification, are permitted.
- .
- There's ABSOLUTELY NO WARRANTY, express or implied.
- .
- (This is a heavily cut-down "BSD license".)
- .
- This differs from Colin Plumb's older public domain implementation in that
- no exactly 32-bit integer data type is required (any 32-bit or wider
- unsigned integer data type will do), there's no compile-time endianness
- configuration, and the function prototypes match OpenSSL's. No code from
- Colin Plumb's implementation has been reused; this comment merely compares
- the properties of the two independent implementations.
- .
- The primary goals of this implementation are portability and ease of use.
- It is meant to be fast, but not as fast as possible. Some known
- optimizations are not included to reduce source code size and avoid
- compile-time configuration.
-
-Files: debian/*
-Copyright: 2008–2009 Charles Plessy <plessy at debian.org>
-License: PD
- Please treat these files as if they were in your country’s public domain.
-
-License: 454
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
- EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
- MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
- .
- IN NO EVENT SHALL LICENSOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
- FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE.
- .
- Permission to use, copy, modify and distribute this software and its
- documentation for any purpose is hereby granted without fee, provided
- that this copyright and notice appears in all copies.
-
-License: GRL
- Copyright (c), Genome Research Ltd (GRL).
- All rights reserved.
- .
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions
- are met:
- .
- * Redistributions of source code must retain the above copyright
- notice, this list of conditions and the following disclaimer.
- .
- * Redistributions in binary form must reproduce the above
- copyright notice, this list of conditions and the following
- disclaimer in the documentation and/or other materials
- provided with the distribution.
- .
- * Neither the name of the Genome Research Limited nor the
- names of its contributors may be used to endorse or promote
- products derived from this software without specific prior
- written permission.
- .
- THIS SOFTWARE IS PROVIDED BY GRL ``AS IS'' AND ANY EXPRESS OR
- IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
- WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- ARE DISCLAIMED. IN NO EVENT SHALL GRL BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
- HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
- STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
- ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
- OF THE POSSIBILITY OF SUCH DAMAGE.
-
-License: GRL-new
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
- .
- 1. Redistributions of source code must retain the above copyright notice,
- this list of conditions and the following disclaimer.
- .
- 2. Redistributions in binary form must reproduce the above
- copyright notice, this list of conditions and the following
- disclaimer in the documentation and/or other materials provided
- with the distribution.
- .
- 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
- Institute nor the names of its contributors may be used to endorse
- or promote products derived from this software without specific
- prior written permission.
- .
- THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS
- IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
- TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
- PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH
- LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
- SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
- LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
- DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
- THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
- (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
- OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-License: MRC
- Copyright (c) Medical Research Council 1994. All rights reserved.
- .
- Permission to use, copy, modify and distribute this software and its
- documentation for any purpose is hereby granted without fee, provided that
- this copyright and notice appears in all copies.
- .
- This file was written by James Bonfield, Simon Dear, Rodger Staden,
- as part of the Staden Package at the MRC Laboratory of Molecular
- Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
- .
- MRC disclaims all warranties with regard to this software.
-
Copied: trunk/packages/staden-io-lib/tags/1.14.3-1/debian/copyright (from rev 20178, trunk/packages/staden-io-lib/trunk/debian/copyright)
===================================================================
--- trunk/packages/staden-io-lib/tags/1.14.3-1/debian/copyright (rev 0)
+++ trunk/packages/staden-io-lib/tags/1.14.3-1/debian/copyright 2015-10-01 13:28:38 UTC (rev 20179)
@@ -0,0 +1,163 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Source: https://qa.debian.org/watch/sf.php/staden/io_lib-1.14.3.tar.gz
+
+Files: *
+Copyright: © 1994 Medical Research Council
+ © Genome Research Ltd (GRL)
+License: GRL or MRC
+Upstream-Comment: Newer files and changes are copyright Genome Research Ltd
+ using the following compatible BSD licence. Disentangling which is which is
+ somewhat tricky, but it's sufficient to say that work in the CVS/SVN tree from
+ August 2002 will be bound by the GRL licence instead.
+
+Files: io_lib/binning.h
+Copyright: © 2014 Genome Research Ltd.
+License: GRL-new
+
+Files: io_lib/rANS_static.c
+Copyright: public domain parts by Fabian 'ryg' Giesen
+ © 2014 Genome Research Ltd.
+License: GRL-new
+
+Files: io_lib/open_trace_file.c
+Copyright: © 2001-2005 454 Life Sciences Corporation
+License: GRL or MRC, and 454
+ This file contains some source code owned by 454 Life Sciences Corporation.
+
+Files: io_lib/sff.c
+Copyright: © Genome Research Limited (GRL)
+ © 2001-2005 454 Life Sciences Corporation.
+License: GRL and 454
+ This file contains some extracts from a file owened by the 454 Life Sciences Corporation.
+
+Files: io_lib/md5.*
+Copyright: see License
+License: says-public-domain
+ This is an OpenSSL-compatible implementation of the RSA Data Security, Inc.
+ MD5 Message-Digest Algorithm (RFC 1321).
+ .
+ Homepage:
+ http://openwall.info/wiki/people/solar/software/public-domain-source-code/md5
+ .
+ Author:
+ Alexander Peslyak, better known as Solar Designer <solar at openwall.com>
+ .
+ This software was written by Alexander Peslyak in 2001. No copyright is
+ claimed, and the software is hereby placed in the public domain.
+ In case this attempt to disclaim copyright and place the software in the
+ public domain is deemed null and void, then the software is
+ Copyright (c) 2001 Alexander Peslyak and it is hereby released to the
+ general public under the following terms:
+ .
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted.
+ .
+ There's ABSOLUTELY NO WARRANTY, express or implied.
+ .
+ (This is a heavily cut-down "BSD license".)
+ .
+ This differs from Colin Plumb's older public domain implementation in that
+ no exactly 32-bit integer data type is required (any 32-bit or wider
+ unsigned integer data type will do), there's no compile-time endianness
+ configuration, and the function prototypes match OpenSSL's. No code from
+ Colin Plumb's implementation has been reused; this comment merely compares
+ the properties of the two independent implementations.
+ .
+ The primary goals of this implementation are portability and ease of use.
+ It is meant to be fast, but not as fast as possible. Some known
+ optimizations are not included to reduce source code size and avoid
+ compile-time configuration.
+
+Files: debian/*
+Copyright: 2008–2009 Charles Plessy <plessy at debian.org>
+License: PD
+ Please treat these files as if they were in your country’s public domain.
+
+License: 454
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+ .
+ IN NO EVENT SHALL LICENSOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+ FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE.
+ .
+ Permission to use, copy, modify and distribute this software and its
+ documentation for any purpose is hereby granted without fee, provided
+ that this copyright and notice appears in all copies.
+
+License: GRL
+ Copyright (c), Genome Research Ltd (GRL).
+ All rights reserved.
+ .
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+ .
+ * Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+ .
+ * Redistributions in binary form must reproduce the above
+ copyright notice, this list of conditions and the following
+ disclaimer in the documentation and/or other materials
+ provided with the distribution.
+ .
+ * Neither the name of the Genome Research Limited nor the
+ names of its contributors may be used to endorse or promote
+ products derived from this software without specific prior
+ written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY GRL ``AS IS'' AND ANY EXPRESS OR
+ IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ ARE DISCLAIMED. IN NO EVENT SHALL GRL BE LIABLE FOR ANY DIRECT,
+ INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+ SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+ HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
+ OF THE POSSIBILITY OF SUCH DAMAGE.
+
+License: GRL-new
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+ .
+ 1. Redistributions of source code must retain the above copyright notice,
+ this list of conditions and the following disclaimer.
+ .
+ 2. Redistributions in binary form must reproduce the above
+ copyright notice, this list of conditions and the following
+ disclaimer in the documentation and/or other materials provided
+ with the distribution.
+ .
+ 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
+ Institute nor the names of its contributors may be used to endorse
+ or promote products derived from this software without specific
+ prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS
+ IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
+ TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
+ PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH
+ LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+ LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+ DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+ THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+License: MRC
+ Copyright (c) Medical Research Council 1994. All rights reserved.
+ .
+ Permission to use, copy, modify and distribute this software and its
+ documentation for any purpose is hereby granted without fee, provided that
+ this copyright and notice appears in all copies.
+ .
+ This file was written by James Bonfield, Simon Dear, Rodger Staden,
+ as part of the Staden Package at the MRC Laboratory of Molecular
+ Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
+ .
+ MRC disclaims all warranties with regard to this software.
+
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