[med-svn] [kmc] 01/01: Add patch to fix empty libkmc

[Kevin Murray]

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daube-guest pushed a commit to branch daube/libkmcdev
in repository kmc.

commit a265cab220fb6507ec204ef7cce81fec96310c76
Author: Kevin Murray <spam at kdmurray.id.au>
Date:   Fri Oct 2 09:59:08 2015 +1000

    Add patch to fix empty libkmc
---
 ...006-Fix-wildcard-to-define-libkmc-objects.patch | 32 ++++++++++++++++++++++
 debian/patches/series                              |  1 +
 2 files changed, 33 insertions(+)

diff --git a/debian/patches/0006-Fix-wildcard-to-define-libkmc-objects.patch b/debian/patches/0006-Fix-wildcard-to-define-libkmc-objects.patch
new file mode 100644
index 0000000..65bc05a
--- /dev/null
+++ b/debian/patches/0006-Fix-wildcard-to-define-libkmc-objects.patch
@@ -0,0 +1,32 @@
+From: Kevin Murray <spam at kdmurray.id.au>
+Date: Fri, 2 Oct 2015 09:58:41 +1000
+Subject: Fix wildcard to define libkmc objects
+
+---
+ makefile | 9 +++++----
+ 1 file changed, 5 insertions(+), 4 deletions(-)
+
+diff --git a/makefile b/makefile
+index bc2ed0f..ff7357d 100644
+--- a/makefile
++++ b/makefile
+@@ -23,14 +23,15 @@ $(KMC_MAIN_DIR)/kb_completer.o \
+ $(KMC_MAIN_DIR)/kb_storer.o \
+ $(KMC_MAIN_DIR)/kmer.o
+ 
+-KMC_DUMP_OBJS = \
+-$(KMC_DUMP_DIR)/nc_utils.o \
++KMC_LIB_OBJS = \
+ $(KMC_API_DIR)/mmer.o \
+-$(KMC_DUMP_DIR)/kmc_dump.o \
+ $(KMC_API_DIR)/kmc_file.o \
+ $(KMC_API_DIR)/kmer_api.o
+ 
+-KMC_LIB_OBJS = $(wildcard $(KMC_API_DIR)/*.o)
++KMC_DUMP_OBJS = \
++$(KMC_DUMP_DIR)/nc_utils.o \
++$(KMC_DUMP_DIR)/kmc_dump.o \
++$(KMC_LIB_OBJS)
+ 
+ ifeq ($(DISABLE_ASMLIB),true)
+ 	CFLAGS += -DDISABLE_ASMLIB
diff --git a/debian/patches/series b/debian/patches/series
index fb0024a..8c00acc 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -3,3 +3,4 @@ use-shared-libs
 allow-dry-clean
 hardening
 0005-Add-static-library-target-to-makefile.patch
+0006-Fix-wildcard-to-define-libkmc-objects.patch

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