[med-svn] [macs] 01/12: Packaging of macs - new package by Tim and Soon

Sun Oct 4 23:33:01 UTC 2015

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misterc-guest pushed a commit to annotated tag debian/2.0.9.1-1
in repository macs.

commit 8fd3e02ec195b9882aeed54a25a837d63b41609c
Author: Tim Booth <tbooth at ceh.ac.uk>
Date:   Thu Jan 5 18:34:50 2012 +0000

    Packaging of macs - new package by Tim and Soon
---
 README.Debian |  6 ++++++
 README.source |  9 +++++++++
 changelog     | 19 +++++++++++++++++++
 compat        |  1 +
 control       | 22 ++++++++++++++++++++++
 copyright     | 10 ++++++++++
 docs          |  1 +
 rules         | 17 +++++++++++++++++
 source/format |  1 +
 watch         | 24 ++++++++++++++++++++++++
 10 files changed, 110 insertions(+)

diff --git a/README.Debian b/README.Debian
new file mode 100644
index 0000000..1261b5a
--- /dev/null
+++ b/README.Debian
@@ -0,0 +1,6 @@
+macs for Debian
+---------------
+
+<possible notes regarding this package - if none, delete this file>
+
+ -- H. Soon Gweon (Key for package building) <soonio at gmail.com>  Thu, 05 Jan 2012 10:52:22 +0000
diff --git a/README.source b/README.source
new file mode 100644
index 0000000..61f9ff2
--- /dev/null
+++ b/README.source
@@ -0,0 +1,9 @@
+macs for Debian
+---------------
+
+<this file describes information about the source package, see Debian policy
+manual section 4.14. You WILL either need to modify or delete this file>
+
+
+
+
diff --git a/changelog b/changelog
new file mode 100644
index 0000000..fb05b6e
--- /dev/null
+++ b/changelog
@@ -0,0 +1,19 @@
+macs (2.0.9.1-1ubuntu3) lucid; urgency=low
+
+  * Fix typo in debian/rules
+
+ -- Tim Booth <tbooth at ceh.ac.uk>  Thu, 05 Jan 2012 18:22:46 +0000
+
+macs (2.0.9.1-1ubuntu2) lucid; urgency=low
+
+  * Package for PPA
+  * Packaged from version 2.0.9-1
+  * Changed debian/rules to override dh_auto_clean to remove *.c files 
+
+ -- H. Soon Gweon (Key for package building) <soonio at gmail.com>  Thu, 05 Jan 2012 13:10:02 +0000
+
+macs (2.0.9.1-1) unstable; urgency=low
+
+  * Initial release (Closes: #nnnn)  <nnnn is the bug number of your ITP>
+
+ -- H. Soon Gweon (Key for package building) <soonio at gmail.com>  Thu, 05 Jan 2012 10:52:22 +0000
diff --git a/compat b/compat
new file mode 100644
index 0000000..45a4fb7
--- /dev/null
+++ b/compat
@@ -0,0 +1 @@
+8
diff --git a/control b/control
new file mode 100644
index 0000000..a32c2c6
--- /dev/null
+++ b/control
@@ -0,0 +1,22 @@
+Source: macs
+Section: science
+Priority: extra
+Maintainer: Tim Booth <tbooth at ceh.ac.uk>, H. Soon Gweon <hyugwe at ceh.ac.uk>
+Build-Depends: debhelper (>= 8.0.0), cython (>= 0.15), python-dev
+Standards-Version: 3.9.2
+Homepage: https://github.com/taoliu/MACS/
+#Vcs-Git: git://git.debian.org/collab-maint/macs.git
+#Vcs-Browser: http://git.debian.org/?p=collab-maint/macs.git;a=summary
+
+Package: macs
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: Model-based Analysis of ChIP-Seq on short reads sequencers
+ MACS empirically models the length of the sequenced ChIP fragments, which 
+ tends to be shorter than sonication or library construction size estimates, 
+ and uses it to improve the spatial resolution of predicted binding sites. 
+ MACS also uses a dynamic Poisson distribution to effectively capture local 
+ biases in the genome sequence, allowing for more sensitive and robust 
+ prediction. MACS compares favorably to existing ChIP-Seq peak-finding 
+ algorithms, is publicly available open source, and can be used for ChIP-Seq 
+ with or without control samples.
diff --git a/copyright b/copyright
new file mode 100644
index 0000000..39d04c2
--- /dev/null
+++ b/copyright
@@ -0,0 +1,10 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: macs
+Source: https://github.com/taoliu/MACS/downloads 
+
+Files: *
+Copyright: 2008 Zhang et al.
+License: This software is distributed under the terms of Artistic License.
+The complete text of the Artistic License can be found in 
+'http://liulab.dfci.harvard.edu/MACS/COPYING'
+
diff --git a/docs b/docs
new file mode 100644
index 0000000..e845566
--- /dev/null
+++ b/docs
@@ -0,0 +1 @@
+README
diff --git a/rules b/rules
new file mode 100755
index 0000000..37c4aea
--- /dev/null
+++ b/rules
@@ -0,0 +1,17 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+	dh $@
+
+override_dh_auto_clean:
+	dh_auto_clean
+	find -type f -name '*.c' -exec rm -f '{}' ';' 
diff --git a/source/format b/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/watch b/watch
new file mode 100644
index 0000000..97796fe
--- /dev/null
+++ b/watch
@@ -0,0 +1,24 @@
+# Example watch control file for uscan
+# Rename this file to "watch" and then you can run the "uscan" command
+# to check for upstream updates and more.
+# See uscan(1) for format
+
+# Compulsory line, this is a version 3 file
+version=3
+
+# Uncomment to examine a Webpage
+# <Webpage URL> <string match>
+opts="uversionmangle=s/-/./" \
+https://github.com/taoliu/MACS/downloads /downloads/.*/MACS/MACS-(.*)\.tar\.gz
+
+# Uncomment to examine a Webserver directory
+#http://www.example.com/pub/macs-(.*)\.tar\.gz
+
+# Uncommment to examine a FTP server
+#ftp://ftp.example.com/pub/macs-(.*)\.tar\.gz debian uupdate
+
+# Uncomment to find new files on sourceforge, for devscripts >= 2.9
+# http://sf.net/macs/macs-(.*)\.tar\.gz
+
+# Uncomment to find new files on GooglePages
+# http://example.googlepages.com/foo.html macs-(.*)\.tar\.gz

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/macs.git

