[med-svn] r20226 - in trunk/packages: . python-pyvcf python-pyvcf/trunk python-pyvcf/trunk/debian python-pyvcf/trunk/debian/source
Andreas Tille
tille at moszumanska.debian.org
Tue Oct 13 20:28:17 UTC 2015
Author: tille
Date: 2015-10-13 20:28:16 +0000 (Tue, 13 Oct 2015)
New Revision: 20226
Added:
trunk/packages/python-pyvcf/
trunk/packages/python-pyvcf/trunk/
trunk/packages/python-pyvcf/trunk/debian/
trunk/packages/python-pyvcf/trunk/debian/changelog
trunk/packages/python-pyvcf/trunk/debian/compat
trunk/packages/python-pyvcf/trunk/debian/control
trunk/packages/python-pyvcf/trunk/debian/copyright
trunk/packages/python-pyvcf/trunk/debian/rules
trunk/packages/python-pyvcf/trunk/debian/source/
trunk/packages/python-pyvcf/trunk/debian/source/format
trunk/packages/python-pyvcf/trunk/debian/watch
Log:
Inject python-pyvcf
Added: trunk/packages/python-pyvcf/trunk/debian/changelog
===================================================================
--- trunk/packages/python-pyvcf/trunk/debian/changelog (rev 0)
+++ trunk/packages/python-pyvcf/trunk/debian/changelog 2015-10-13 20:28:16 UTC (rev 20226)
@@ -0,0 +1,5 @@
+python-pyvcf (0.6.7-1) UNRELEASED; urgency=medium
+
+ * Initial upload (Closes: #??)
+
+ -- Andreas Tille <tille at debian.org> Tue, 13 Oct 2015 17:02:08 +0200
Added: trunk/packages/python-pyvcf/trunk/debian/compat
===================================================================
--- trunk/packages/python-pyvcf/trunk/debian/compat (rev 0)
+++ trunk/packages/python-pyvcf/trunk/debian/compat 2015-10-13 20:28:16 UTC (rev 20226)
@@ -0,0 +1 @@
+9
Added: trunk/packages/python-pyvcf/trunk/debian/control
===================================================================
--- trunk/packages/python-pyvcf/trunk/debian/control (rev 0)
+++ trunk/packages/python-pyvcf/trunk/debian/control 2015-10-13 20:28:16 UTC (rev 20226)
@@ -0,0 +1,61 @@
+Source: python-pyvcf
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: python
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ dh-python,
+ cython,
+ python-dev (>= 2.7),
+ python-setuptools,
+ cython3,
+ python3-dev,
+ python3-setuptools
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/python-pyvcf/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/python-pyvcf/trunk/
+Homepage: https://pypi.python.org/pypi/PyVCF
+
+Package: python-pyvcf
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ ${python:Depends}
+Description: Variant Call Format (VCF) parser for Python
+ The Variant Call Format (VCF) specifies the format of a text file used
+ in bioinformatics for storing gene sequence variations. The format has
+ been developed with the advent of large-scale genotyping and DNA
+ sequencing projects, such as the 1000 Genomes Project.
+ .
+ The intent of this module is to mimic the ``csv`` module in the Python
+ stdlib, as opposed to more flexible serialization formats like JSON or
+ YAML. ``vcf`` will attempt to parse the content of each record based on
+ the data types specified in the meta-information lines -- specifically
+ the ##INFO and
+ ##FORMAT lines. If these lines are missing or incomplete, it will check
+ against the reserved types mentioned in the spec. Failing that, it will
+ just return strings.
+ .
+ This package provides the Python 2 modules.
+
+Package: python3-pyvcf
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ ${python3:Depends}
+Description: Variant Call Format (VCF) parser for Python 3
+ The Variant Call Format (VCF) specifies the format of a text file used
+ in bioinformatics for storing gene sequence variations. The format has
+ been developed with the advent of large-scale genotyping and DNA
+ sequencing projects, such as the 1000 Genomes Project.
+ .
+ The intent of this module is to mimic the ``csv`` module in the Python
+ stdlib, as opposed to more flexible serialization formats like JSON or
+ YAML. ``vcf`` will attempt to parse the content of each record based on
+ the data types specified in the meta-information lines -- specifically
+ the ##INFO and
+ ##FORMAT lines. If these lines are missing or incomplete, it will check
+ against the reserved types mentioned in the spec. Failing that, it will
+ just return strings.
+ .
+ This package provides the Python 3 modules.
Added: trunk/packages/python-pyvcf/trunk/debian/copyright
===================================================================
--- trunk/packages/python-pyvcf/trunk/debian/copyright (rev 0)
+++ trunk/packages/python-pyvcf/trunk/debian/copyright 2015-10-13 20:28:16 UTC (rev 20226)
@@ -0,0 +1,38 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: PyVCF
+Upstream-Contact: James Casbon <casbon at gmail.com>
+Source: https://pypi.python.org/pypi/PyVCF
+
+Files: *
+Copyright: 2011-2015, Population Genetics Technologies Ltd, All rights reserved.
+License: BSD-3-clause
+
+Files: debian/*
+Copyright: 2015 Andreas Tille <tille at debian.org>
+License: BSD-3-clause
+
+License: BSD-3-clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+ .
+ 1. Redistributions of source code must retain the above copyright notice, this
+ list of conditions and the following disclaimer.
+ .
+ 2. Redistributions in binary form must reproduce the above copyright notice, this
+ list of conditions and the following disclaimer in the documentation and/or
+ other materials provided with the distribution.
+ .
+ 3. Neither the name of the Population Genetics Technologies Ltd nor the names of
+ its contributors may be used to endorse or promote products derived from this
+ software without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+ FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+ SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+ OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Added: trunk/packages/python-pyvcf/trunk/debian/rules
===================================================================
--- trunk/packages/python-pyvcf/trunk/debian/rules (rev 0)
+++ trunk/packages/python-pyvcf/trunk/debian/rules 2015-10-13 20:28:16 UTC (rev 20226)
@@ -0,0 +1,11 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+export PYBUILD_NAME=pyvcf
+
+%:
+ dh $@ --with python2,python3 --buildsystem=pybuild
+
Property changes on: trunk/packages/python-pyvcf/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/python-pyvcf/trunk/debian/source/format
===================================================================
--- trunk/packages/python-pyvcf/trunk/debian/source/format (rev 0)
+++ trunk/packages/python-pyvcf/trunk/debian/source/format 2015-10-13 20:28:16 UTC (rev 20226)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/python-pyvcf/trunk/debian/watch
===================================================================
--- trunk/packages/python-pyvcf/trunk/debian/watch (rev 0)
+++ trunk/packages/python-pyvcf/trunk/debian/watch 2015-10-13 20:28:16 UTC (rev 20226)
@@ -0,0 +1,2 @@
+version=3
+https://pypi.python.org/pypi/PyVCF .*/PyVCF-([0-9.]+).tar.[xgb]z2?
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