[med-svn] [pbseqlib] 04/04: Initial packaging

[Afif Elghraoui]

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afif-guest pushed a commit to branch master
in repository pbseqlib.

commit 1bf6953468342a76211080de2252a4d250c3338b
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Fri Oct 16 01:29:20 2015 -0700

    Initial packaging
---
 debian/changelog     |  5 ++++
 debian/compat        |  1 +
 debian/control       | 68 ++++++++++++++++++++++++++++++++++++++++++++++++++++
 debian/rules         | 20 ++++++++++++++++
 debian/source/format |  1 +
 5 files changed, 95 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..5719ac9
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+pbseqlib (0~20151014+gitbe5d1bf-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #798218)
+
+ -- Afif Elghraoui <afif at ghraoui.name>  Sun, 06 Sep 2015 11:38:14 -0700
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..7cf7c6b
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,68 @@
+Source: pbseqlib
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Afif Elghraoui <afif at ghraoui.name>
+Build-Depends: debhelper (>= 9),
+	       python,
+	       libgtest-dev,
+       	       zlib1g-dev,
+	       libhdf5-dev,
+	       libboost-dev,
+#	       libpbbam-dev,
+	       libhts-dev
+Standards-Version: 3.9.6
+Section: libs
+Homepage: https://github.com/PacificBiosciences/blasr_libcpp
+#Vcs-Git: git://anonscm.debian.org/collab-maint/libblasr.git
+#Vcs-Browser: http://anonscm.debian.org/?p=collab-maint/libblasr.git;a=summary
+
+Package: libpbdata-dev
+Section: libdevel
+Architecture: any
+Depends:
+	libblasrBROKEN (= ${binary:Version}),
+	${misc:Depends}
+Description: <insert up to 60 chars description>
+ <insert long description, indented with spaces>
+
+Package: libpbdata
+Architecture: any
+Depends:
+	${shlibs:Depends},
+	${misc:Depends}
+Description: tools for handling PacBio sequences
+ <insert long description, indented with spaces>
+
+Package: libpbhdf-dev
+Section: libdevel
+Architecture: any
+Depends:
+	libblasrBROKEN (= ${binary:Version}),
+	${misc:Depends}
+Description: <insert up to 60 chars description>
+ <insert long description, indented with spaces>
+
+Package: libpbhdf
+Architecture: any
+Depends:
+	${shlibs:Depends},
+	${misc:Depends}
+Description: tools for handling PacBio hdf5 files
+ <insert long description, indented with spaces>
+
+Package: libblasr-dev
+Section: libdevel
+Architecture: any
+Depends:
+	libblasrBROKEN (= ${binary:Version}),
+	${misc:Depends}
+Description: <insert up to 60 chars description>
+ <insert long description, indented with spaces>
+
+Package: libblasrBROKEN
+Architecture: any
+Depends:
+	${shlibs:Depends},
+	${misc:Depends}
+Description: tools for aligning PacBio reads to target sequences
+ <insert long description, indented with spaces>
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..99a82ac
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,20 @@
+#!/usr/bin/make -f
+
+#DH_VERBOSE = 1
+
+DPKG_EXPORT_BUILDFLAGS = 1
+include /usr/share/dpkg/default.mk
+
+# These two lines might not be needed
+export COMMON_NO_THIRD_PARTY_REQD=true
+export SHARED_LIB = 1
+
+export NOPBBAM = 1
+export HDF5_INC = /usr/include/hdf5/serial
+export HDF5_LIB = /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial
+
+%:
+	dh $@ --parallel
+
+override_dh_auto_configure:
+	./configure.py PREFIX=/usr/
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)

-- 
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