[med-svn] [trinityrnaseq] branch upstream updated (7f4bee0 -> 8cee320)

[Michael Crusoe]

This is an automated email from the git hooks/post-receive script.

misterc-guest pushed a change to branch upstream
in repository trinityrnaseq.

      from  7f4bee0   Imported Upstream version 2.1.0+dfsg
       new  8cee320   Imported Upstream version 2.1.1+dfsg

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitmodules                                        |   3 +
 Trinity                                            |  42 +++++-
 trinity-plugins/htslib-1.2.1.tar.bz2               | Bin 0 -> 911326 bytes
 trinity-plugins/htslib.github.Aug182015.tar.gz     | Bin 0 -> 7316027 bytes
 trinity-plugins/samtools-0.1.19.tar.bz2            | Bin 0 -> 514507 bytes
 util/misc/fastQ_rand_subset.pl                     | 158 ++++++++++-----------
 ...subset.reservoir_sampling_reqiures_high_mem.pl} |   0
 util/misc/run_STAR.pl                              |  19 ++-
 .../GG_partitioned_trinity_aggregator.pl           |   2 +-
 9 files changed, 130 insertions(+), 94 deletions(-)
 create mode 100644 .gitmodules
 create mode 100644 trinity-plugins/htslib-1.2.1.tar.bz2
 create mode 100644 trinity-plugins/htslib.github.Aug182015.tar.gz
 create mode 100644 trinity-plugins/samtools-0.1.19.tar.bz2
 copy util/misc/{fastQ_rand_subset.pl => fastQ_rand_subset.reservoir_sampling_reqiures_high_mem.pl} (100%)

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