[med-svn] r20295 - in trunk/packages: . garli garli/trunk garli/trunk/debian garli/trunk/debian/source

[Andreas Tille]

Author: tille
Date: 2015-10-23 09:59:03 +0000 (Fri, 23 Oct 2015)
New Revision: 20295

Added:
   trunk/packages/garli/
   trunk/packages/garli/trunk/
   trunk/packages/garli/trunk/debian/
   trunk/packages/garli/trunk/debian/changelog
   trunk/packages/garli/trunk/debian/compat
   trunk/packages/garli/trunk/debian/control
   trunk/packages/garli/trunk/debian/copyright
   trunk/packages/garli/trunk/debian/rules
   trunk/packages/garli/trunk/debian/source/
   trunk/packages/garli/trunk/debian/source/format
   trunk/packages/garli/trunk/debian/watch
Log:
Inject garli, but needs http://sourceforge.net/projects/ncl/ packaged first


Added: trunk/packages/garli/trunk/debian/changelog
===================================================================
--- trunk/packages/garli/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/garli/trunk/debian/changelog	2015-10-23 09:59:03 UTC (rev 20295)
@@ -0,0 +1,6 @@
+garli (2.1-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+  TODO: Needs http://sourceforge.net/projects/ncl/
+
+ -- Andreas Tille <tille at debian.org>  Fri, 23 Oct 2015 08:41:45 +0200

Added: trunk/packages/garli/trunk/debian/compat
===================================================================
--- trunk/packages/garli/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/garli/trunk/debian/compat	2015-10-23 09:59:03 UTC (rev 20295)
@@ -0,0 +1 @@
+9

Added: trunk/packages/garli/trunk/debian/control
===================================================================
--- trunk/packages/garli/trunk/debian/control	                        (rev 0)
+++ trunk/packages/garli/trunk/debian/control	2015-10-23 09:59:03 UTC (rev 20295)
@@ -0,0 +1,24 @@
+Source: garli
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               dh-autoreconf
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/garli/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/garle/trunk/
+Homepage: https://github.com/Ashod/garli
+
+Package: garli
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
+Description: phylogenetic analysis of molecular sequence data using maximum-likelihood
+ GARLI, Genetic Algorithm for Rapid Likelihood Inference is a program for
+ inferring phylogenetic trees. Using an approach similar to a classical
+ genetic algorithm, it rapidly searches the space of evolutionary trees
+ and model parameters to find the solution maximizing the likelihood
+ score. It implements nucleotide, amino acid and codon-based models of
+ sequence evolution, and runs on all platforms. The latest version adds
+ support for partitioned models and morphology-like datatypes.

Added: trunk/packages/garli/trunk/debian/copyright
===================================================================
--- trunk/packages/garli/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/garli/trunk/debian/copyright	2015-10-23 09:59:03 UTC (rev 20295)
@@ -0,0 +1,12 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: garli
+Upstream-Contact: garli.support at gmail.com
+Source: https://github.com/Ashod/garli/releases
+
+Files: *
+Copyright: © 20xx-20yy <upstream>
+License: <license>
+
+Files: debian/*
+Copyright: © 2014 maintainername <maintainer at e.mail>
+License: <license>

Added: trunk/packages/garli/trunk/debian/rules
===================================================================
--- trunk/packages/garli/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/garli/trunk/debian/rules	2015-10-23 09:59:03 UTC (rev 20295)
@@ -0,0 +1,19 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+# some helpful variables - uncomment them if needed
+# shamelessly stolen from http://jmtd.net/log/awk/
+#DEBVERS        := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
+#VERSION        := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
+#DEBFLAVOR      := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
+#DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+#DEBIAN_BRANCH  := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
+#GIT_TAG        := $(subst ~,_,$(VERSION))
+
+# alternatively to manually set those variables, you can
+#  include /usr/share/dpkg/default.mk
+# and use what is set there.
+
+%:
+	dh $@ --with autoreconf


Property changes on: trunk/packages/garli/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/garli/trunk/debian/source/format
===================================================================
--- trunk/packages/garli/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/garli/trunk/debian/source/format	2015-10-23 09:59:03 UTC (rev 20295)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/garli/trunk/debian/watch
===================================================================
--- trunk/packages/garli/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/garli/trunk/debian/watch	2015-10-23 09:59:03 UTC (rev 20295)
@@ -0,0 +1,3 @@
+version=3
+
+https://github.com/Ashod/garli/releases .*/archive/(\d[\d.-]+)-release\.(?:tar(?:\.gz|\.bz2)?|tgz)