[med-svn] [python-biom-format] branch master created (now dafa75b)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository python-biom-format.

        at  dafa75b   Moved from SVN to Git

This branch includes the following new commits:

       new  2858a1b   Inject preliminary packaging files for python-biom-format which is needed by qiime
       new  949d1c4   Add upstream contact
       new  19cd836   Once my package for biom-format was ready I had eventually found Andreas' ... I just looked at b* files :o) The python module is "biom", not "biom-format" from what I understood. Does that matter? Much?
       new  dfced27   Upstream confirmed GPL
       new  00cfe53   Those ._* MAC OSX files create severe trouble when building - removing from upstream tarball in get-orig-source
       new  64ab49c   Proper Build-Depends, Depends, Section
       new  16b24a3   Remove language extension from scripts
       new  4c8049a   Fix clean target when building with cython
       new  7901ff3   Add cython as Build-Depends, WARNING: By using this which was *strongly* advised by upstream we are running into an gcc-4.7 build issue.  I'm about to sort this out on Debian mentors list.
       new  af2bd71   Enable building with Cython 0.17.beta1
       new  ee8115a   Work around problematic Cython versions which create invalid gcc-4.7 code
       new  6b6fcb8   README.source to explain the cython issue
       new  2d9c9d4   Use help2man to create manpages where this makes sense
       new  34ce914   Decide to go with statically created man pages and provide the script to do so because proper creation with help2man would need some extra build-depends extra for this purpose which migh uselessly stress some auto-builders.
       new  53d126b   Small changes that helped me build on Ubuntu
       new  29b6002   Add Files-Excluded to document what was removed from original source
       new  b14546d   New download location
       new  2a74313   Upstream is now delivering properly cleaned up tarballs
       new  e64fc3c   cme fix dpkg-control
       new  6e19ccd   Remove workaround cython problem which was needed when 1.0.0 was released because cython at this time was suffering from #682652
       new  064fb29   anonscm in Vcs fields
       new  4ec5623   Start with creating manpages via help2man
       new  57b9e3b   Create manpages at package build time
       new  8f62192   Add other manpages if script provides sensible help output
       new  74a2754   Upload to unstable
       new  55639f0   Mass commit for 1.2.0-1
       new  b847de0   Move debian/upstream to debian/upstream/metadata
       new  f5ee01e   Trying to get the the Bio-Linux and Debian packages in sync.  I think this does it. The cython on Precise does build OK and passes the tests, so I've dropped the acceptable version down to what is on Ubuntu, otherwise we need two different control files.
       new  b0e00cf   Upstream location has changed, some preprocessed binary doc files need to be removed
       new  9991ae5   cython is not used any more in new upstream version
       new  cfd704e   Adapted patches to new upstream version (hope this is correct)
       new  59c0072   Package is now Architecture: all
       new  0d169ce   For this version a larger version of pyqi is needed
       new  b8801a8   Fix bash-completion build after rearrangement of source directory.
       new  cb889e7   Save user privacy by preventing inclusion of web adds
       new  2bff6f7   Provide doc-base input file; use linktrees
       new  48d71ad   Do not install scripts printing "This script no longer exists. ..." any more; Use manpage created by sphinx
       new  9eac08a   Upload to unstable
       new  4a13d0f   Adapt to new upstream version but documentation build fails (will ask on Debian Python list for help)
       new  c3273d9   Exclude also *.so and *pyx
       new  14483dd   Reamove also *.egg-info which is removed by pybuild anyway
       new  34f97d4   *.pyx files are actually source files
       new  1e051f9   Delete autogenerated *.c files and recreate them using CYTHON; create documentation thanks to a patch from Jakub Wilk (thanks Jakukb)
       new  d726364   Found another Dependency (h5py) and add the Build-Depends also to Recommends since these are most probably needed.
       new  8e5429a   Versioned Build-Depends: pyqi (>= 0.3.2)
       new  aa75742   Add ${shlibs:Depends} since package is now arch any
       new  34c37c1   Adjust dependencies according to upstream documentation, upload to unstable
       new  8074e15   New upstream version
       new  583432f   Prepare new upstream version
       new  29919cf   enable sloppy sphinx build
       new  bbd114a   Imported Upstream version 2.1+dfsg
       new  4f1ca21   Merge tag 'upstream/2.1+dfsg'
       new  58a257b   Read debian/ dir
       new  dafa75b   Moved from SVN to Git

The 54 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


-- 
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