[med-svn] [r-bioc-biocgenerics] branch master updated (da579e0 -> 464c1fc)

[Andreas Tille]

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tille pushed a change to branch master
in repository r-bioc-biocgenerics.

      from  da579e0   Add missing r-cran-runit to debian/test/control
       new  247f3d3   Imported Upstream version 0.16.0
       new  52a7179   Merge tag 'upstream/0.16.0'
       new  464c1fc   New upstream version

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                          | 25 ++++-----
 NAMESPACE                            | 20 +++++++-
 R/{rank.R => IQR.R}                  |  5 +-
 R/{image.R => dbconn.R}              |  6 +--
 R/{lapply.R => grep.R}               |  9 ++--
 R/is.unsorted.R                      |  5 +-
 R/{tapply.R => lengths.R}            |  6 +--
 R/{rank.R => mad.R}                  |  7 +--
 R/rep.R                              | 37 +-------------
 R/{update-utils.R => replaceSlots.R} | 17 +++++--
 R/show-utils.R                       | 99 ------------------------------------
 R/{rank.R => subset.R}               |  5 +-
 R/testPackage.R                      | 69 +++++++++++++++++++++----
 TODO                                 |  4 --
 debian/changelog                     |  5 +-
 man/BiocGenerics-package.Rd          |  7 +++
 man/IQR.Rd                           | 58 +++++++++++++++++++++
 man/cbind.Rd                         |  2 +-
 man/dbconn.Rd                        | 60 ++++++++++++++++++++++
 man/grep.Rd                          | 70 +++++++++++++++++++++++++
 man/is.unsorted.Rd                   |  2 +-
 man/lengths.Rd                       | 99 ++++++++++++++++++++++++++++++++++++
 man/mad.Rd                           | 60 ++++++++++++++++++++++
 man/order.Rd                         |  2 +-
 man/organism_species.Rd              |  2 +-
 man/rank.Rd                          |  2 +-
 man/rep.Rd                           | 10 ++--
 man/sort.Rd                          |  2 +-
 man/subset.Rd                        | 69 +++++++++++++++++++++++++
 man/testPackage.Rd                   | 79 ++++++++++++++++++++++++++++
 man/unsplit.Rd                       |  2 +-
 31 files changed, 640 insertions(+), 205 deletions(-)
 copy R/{rank.R => IQR.R} (73%)
 copy R/{image.R => dbconn.R} (50%)
 copy R/{lapply.R => grep.R} (62%)
 copy R/{tapply.R => lengths.R} (74%)
 copy R/{rank.R => mad.R} (65%)
 rename R/{update-utils.R => replaceSlots.R} (77%)
 delete mode 100644 R/show-utils.R
 copy R/{rank.R => subset.R} (66%)
 create mode 100644 man/IQR.Rd
 create mode 100644 man/dbconn.Rd
 create mode 100644 man/grep.Rd
 create mode 100644 man/lengths.Rd
 create mode 100644 man/mad.Rd
 create mode 100644 man/subset.Rd
 create mode 100644 man/testPackage.Rd

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