[med-svn] [r-bioc-biobase] 02/04: Imported Upstream version 2.30.0

[Andreas Tille]

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commit aeb2464521a186bd3a10f10c449bb18be4915308
Author: Andreas Tille <tille at debian.org>
Date:   Thu Oct 29 17:07:49 2015 +0100

    Imported Upstream version 2.30.0
---
 DESCRIPTION                            |   4 ++--
 R/methods-VersionsNull.R               |   2 +-
 R/methods-eSet.R                       |   2 +-
 build/vignette.rds                     | Bin 343 -> 344 bytes
 inst/doc/BiobaseDevelopment.pdf        | Bin 246480 -> 223305 bytes
 inst/doc/ExpressionSetIntroduction.pdf | Bin 174953 -> 157770 bytes
 inst/doc/esApply.pdf                   | Bin 93292 -> 86615 bytes
 7 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 468e6f1..35cff60 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: Biobase
 Title: Biobase: Base functions for Bioconductor
-Version: 2.28.0
+Version: 2.30.0
 Author: R. Gentleman, V. Carey, M. Morgan, S. Falcon
 Description: Functions that are needed by many other packages or which
         replace R functions.
@@ -22,4 +22,4 @@ Collate: tools.R strings.R environment.R vignettes.R packages.R
 LazyLoad: yes
 biocViews: Infrastructure
 NeedsCompilation: yes
-Packaged: 2015-04-17 02:06:16 UTC; biocbuild
+Packaged: 2015-10-14 00:32:21 UTC; biocbuild
diff --git a/R/methods-VersionsNull.R b/R/methods-VersionsNull.R
index 7e47a79..0d59047 100644
--- a/R/methods-VersionsNull.R
+++ b/R/methods-VersionsNull.R
@@ -3,7 +3,7 @@
 
 setMethod("initialize", signature(.Object="VersionsNull"),
           function(.Object, ...) {
-              if (length(list(...)))
+              if (!missing(...))
                 warning("ignoring arguments to '.VersionsNull()')")
               .Object
           })
diff --git a/R/methods-eSet.R b/R/methods-eSet.R
index 05fe104..20a2b9c 100644
--- a/R/methods-eSet.R
+++ b/R/methods-eSet.R
@@ -355,7 +355,7 @@ setMethod("[", "eSet", function(x, i, j, ..., drop = FALSE) {
   if (missing(drop))
     drop <- FALSE
   if (missing(i) && missing(j)) {
-      if (length(list(...))!=0)
+      if (!missing(...))
         stop("specify genes or samples to subset; use '",
              substitute(x), "$", names(list(...))[[1]],
              "' to access phenoData variables")
diff --git a/build/vignette.rds b/build/vignette.rds
index a8c31e8..0ab9656 100644
Binary files a/build/vignette.rds and b/build/vignette.rds differ
diff --git a/inst/doc/BiobaseDevelopment.pdf b/inst/doc/BiobaseDevelopment.pdf
index 1f9e815..d2054f3 100644
Binary files a/inst/doc/BiobaseDevelopment.pdf and b/inst/doc/BiobaseDevelopment.pdf differ
diff --git a/inst/doc/ExpressionSetIntroduction.pdf b/inst/doc/ExpressionSetIntroduction.pdf
index 9b27bc8..c267e2a 100644
Binary files a/inst/doc/ExpressionSetIntroduction.pdf and b/inst/doc/ExpressionSetIntroduction.pdf differ
diff --git a/inst/doc/esApply.pdf b/inst/doc/esApply.pdf
index 1b6e310..96909f0 100644
Binary files a/inst/doc/esApply.pdf and b/inst/doc/esApply.pdf differ

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