[med-svn] r20331 - in trunk/packages/R/r-bioc-xvector/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2015-10-29 22:01:55 +0000 (Thu, 29 Oct 2015)
New Revision: 20331

Added:
   trunk/packages/R/r-bioc-xvector/trunk/debian/patches/
   trunk/packages/R/r-bioc-xvector/trunk/debian/patches/series
   trunk/packages/R/r-bioc-xvector/trunk/debian/patches/use_debian_packaged_zlib.patch
Modified:
   trunk/packages/R/r-bioc-xvector/trunk/debian/changelog
   trunk/packages/R/r-bioc-xvector/trunk/debian/control
   trunk/packages/R/r-bioc-xvector/trunk/debian/watch
Log:
New upstream version, Use Debian packaged zlib



Modified: trunk/packages/R/r-bioc-xvector/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-xvector/trunk/debian/changelog	2015-10-29 21:41:38 UTC (rev 20330)
+++ trunk/packages/R/r-bioc-xvector/trunk/debian/changelog	2015-10-29 22:01:55 UTC (rev 20331)
@@ -1,3 +1,10 @@
+r-bioc-xvector (0.10.0-1) unstable; urgency=medium
+
+  * New upstream version
+  * Use Debian packaged zlib
+
+ -- Andreas Tille <tille at debian.org>  Thu, 29 Oct 2015 22:57:25 +0100
+
 r-bioc-xvector (0.8.0-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-xvector/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-xvector/trunk/debian/control	2015-10-29 21:41:38 UTC (rev 20330)
+++ trunk/packages/R/r-bioc-xvector/trunk/debian/control	2015-10-29 22:01:55 UTC (rev 20331)
@@ -7,7 +7,7 @@
 Build-Depends: debhelper (>= 9),
                cdbs,
                r-base-dev,
-               r-bioc-iranges (>= 2.2.0)
+               r-bioc-iranges (>= 2.4.0)
 Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-xvector/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-xvector/trunk/

Added: trunk/packages/R/r-bioc-xvector/trunk/debian/patches/series
===================================================================
--- trunk/packages/R/r-bioc-xvector/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/R/r-bioc-xvector/trunk/debian/patches/series	2015-10-29 22:01:55 UTC (rev 20331)
@@ -0,0 +1 @@
+use_debian_packaged_zlib.patch

Added: trunk/packages/R/r-bioc-xvector/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-xvector/trunk/debian/patches/use_debian_packaged_zlib.patch	                        (rev 0)
+++ trunk/packages/R/r-bioc-xvector/trunk/debian/patches/use_debian_packaged_zlib.patch	2015-10-29 22:01:55 UTC (rev 20331)
@@ -0,0 +1,26 @@
+Author: Andreas Tille <tille at debian.org>
+LastChanged: Thu, 29 Oct 2015 22:45:15 +0100
+Description: If the systems includes zlib natively there is no point in
+ requiring the import of zlibbioc
+
+--- a/DESCRIPTION
++++ b/DESCRIPTION
+@@ -8,7 +8,7 @@ Maintainer: H. Pages <hpages at fredhutch.o
+ biocViews: Infrastructure, DataRepresentation
+ Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.11.3), S4Vectors (>=
+         0.7.1), IRanges (>= 2.3.7)
+-Imports: methods, zlibbioc, BiocGenerics, S4Vectors, IRanges
++Imports: methods, BiocGenerics, S4Vectors, IRanges
+ LinkingTo: S4Vectors, IRanges
+ Suggests: Biostrings, drosophila2probe, RUnit
+ License: Artistic-2.0
+--- a/NAMESPACE
++++ b/NAMESPACE
+@@ -1,7 +1,6 @@
+ useDynLib(XVector)
+ 
+ import(methods)
+-import(zlibbioc)
+ import(BiocGenerics)
+ import(S4Vectors)
+ import(IRanges)

Modified: trunk/packages/R/r-bioc-xvector/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-bioc-xvector/trunk/debian/watch	2015-10-29 21:41:38 UTC (rev 20330)
+++ trunk/packages/R/r-bioc-xvector/trunk/debian/watch	2015-10-29 22:01:55 UTC (rev 20331)
@@ -1,3 +1,3 @@
 version=3
-opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \
+opts=downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc? \
  http://www.bioconductor.org/packages/release/bioc/html/XVector.html .*/XVector_([\d\.]+)\.tar\.gz