[med-svn] [trnascan-se] 05/08: Create a separate package for architecture-independent files

Afif Elghraoui afif-guest at moszumanska.debian.org
Sat Oct 31 05:56:38 UTC 2015


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afif-guest pushed a commit to branch master
in repository trnascan-se.

commit 0b8b894a8363a99307721c13749d75a8f7d7cdb4
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Fri Oct 30 21:53:05 2015 -0700

    Create a separate package for architecture-independent files
---
 debian/control                    | 21 ++++++++++++++++++++-
 debian/trnascan-se-common.install |  2 ++
 debian/trnascan-se.install        |  2 ++
 3 files changed, 24 insertions(+), 1 deletion(-)

diff --git a/debian/control b/debian/control
index 993bd06..00f8e36 100644
--- a/debian/control
+++ b/debian/control
@@ -14,7 +14,8 @@ Architecture: any
 Depends:
 	${shlibs:Depends},
 	${misc:Depends},
-	${perl:Depends}
+	${perl:Depends},
+	trnascan-se-common (= ${source:Version})
 Description: detection of transfer RNA genes in genomic sequence
  tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
  giving less than one false positive per 15 gigabases. Two previously described
@@ -25,3 +26,21 @@ Description: detection of transfer RNA genes in genomic sequence
  stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
  Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
  selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
+
+Package: trnascan-se-common
+Architecture: all
+Depends:
+	${misc:Depends},
+	${perl:Depends}
+Description: detection of transfer RNA genes in genomic sequence (common files)
+ tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
+ giving less than one false positive per 15 gigabases. Two previously described
+ tRNA detection programs are used as fast, first-pass prefilters to identify
+ candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
+ model. This work represents a practical application of RNA covariance models,
+ which are general, probabilistic secondary structure profiles based on
+ stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
+ Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
+ selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
+ .
+ This package contains the architecture-independent common files.
diff --git a/debian/trnascan-se-common.install b/debian/trnascan-se-common.install
new file mode 100644
index 0000000..c2e38ab
--- /dev/null
+++ b/debian/trnascan-se-common.install
@@ -0,0 +1,2 @@
+debian/tmp/usr/share/tRNAscan-SE	usr/share
+debian/tmp/usr/share/perl5	usr/share
diff --git a/debian/trnascan-se.install b/debian/trnascan-se.install
new file mode 100644
index 0000000..0a69174
--- /dev/null
+++ b/debian/trnascan-se.install
@@ -0,0 +1,2 @@
+debian/tmp/usr/bin	usr
+debian/tmp/usr/share/man	usr/share

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