[med-svn] [subread] branch master updated (b75636a -> 1325c36)

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a change to branch master
in repository subread.

      from  b75636a    d/changelog: new upstream version
       new  ea3f671   Imported Upstream version 1.4.6-p5+dfsg
       new  b24d4e1   Merge tag 'upstream/1.4.6-p5+dfsg'
       new  18dd667   d/changelog: new upstream version 1.4.6-p5 d/rules: build instructions for documentation d/subread.docs: install pdf d/control: add texlive Build-Dependecies d/patches/fix_syntax.patch: partially applied by upstream
       new  e381fda   d/doc-base: doc-base for the documentation in the PDF format
       new  fa0279e   d/{control,copyright,patches/}: applied wrap-and-sort
       new  1325c36   d/control: remove texlive-bibtex-extra from Build-Depends

The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/changelog                                  |    6 +
 debian/control                                    |   22 +-
 debian/copyright                                  |    2 +-
 debian/doc-base                                   |   12 +
 debian/patches/fix_syntax.patch                   |   18 +-
 debian/rules                                      |    7 +
 debian/subread.docs                               |    1 +
 doc/MDSplot.png                                   |  Bin 0 -> 22947 bytes
 doc/SubreadUsersGuide.bib                         |   73 ++
 doc/SubreadUsersGuide.tex                         | 1219 +++++++++++++++++++++
 doc/indel.png                                     |  Bin 0 -> 108132 bytes
 doc/junction.png                                  |  Bin 0 -> 172344 bytes
 doc/seed-and-vote.png                             |  Bin 0 -> 112767 bytes
 doc/voom_mean_variance.png                        |  Bin 0 -> 99213 bytes
 src/HelperFunctions.c                             |   47 +-
 src/HelperFunctions.h                             |    2 +-
 src/core-junction.c                               |   24 +-
 src/coverage_calc.c                               |   18 +-
 src/makefile.version                              |    2 +-
 src/readSummary.c                                 |  669 ++++++-----
 src/subread.h                                     |    1 +
 test/featureCounts/result/test-minimum.FC         |    9 +
 test/featureCounts/result/test-minimum.FC.summary |   12 +
 23 files changed, 1805 insertions(+), 339 deletions(-)
 create mode 100644 debian/doc-base
 create mode 100644 doc/MDSplot.png
 create mode 100644 doc/SubreadUsersGuide.bib
 create mode 100644 doc/SubreadUsersGuide.tex
 create mode 100644 doc/indel.png
 create mode 100644 doc/junction.png
 create mode 100644 doc/seed-and-vote.png
 create mode 100644 doc/voom_mean_variance.png
 create mode 100644 test/featureCounts/result/test-minimum.FC
 create mode 100644 test/featureCounts/result/test-minimum.FC.summary

-- 
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