[med-svn] [subread] 02/06: Merge tag 'upstream/1.4.6-p5+dfsg'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository subread.

commit b24d4e106b3157b2effdb20f5bb433e170ed90e3
Merge: b75636a ea3f671
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Sat Sep 5 12:31:11 2015 +0200

    Merge tag 'upstream/1.4.6-p5+dfsg'
    
    Upstream version 1.4.6-p5+dfsg

 doc/MDSplot.png                                   |  Bin 0 -> 22947 bytes
 doc/SubreadUsersGuide.bib                         |   73 ++
 doc/SubreadUsersGuide.tex                         | 1219 +++++++++++++++++++++
 doc/indel.png                                     |  Bin 0 -> 108132 bytes
 doc/junction.png                                  |  Bin 0 -> 172344 bytes
 doc/seed-and-vote.png                             |  Bin 0 -> 112767 bytes
 doc/voom_mean_variance.png                        |  Bin 0 -> 99213 bytes
 src/HelperFunctions.c                             |   47 +-
 src/HelperFunctions.h                             |    2 +-
 src/core-junction.c                               |   24 +-
 src/coverage_calc.c                               |   18 +-
 src/makefile.version                              |    2 +-
 src/readSummary.c                                 |  669 ++++++-----
 src/subread.h                                     |    1 +
 test/featureCounts/result/test-minimum.FC         |    9 +
 test/featureCounts/result/test-minimum.FC.summary |   12 +
 16 files changed, 1768 insertions(+), 308 deletions(-)

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