[med-svn] [picard-tools] 04/05: Merge tag 'upstream/1.138+dfsg.1' into sid
Vincent Danjean
vdanjean at debian.org
Mon Sep 7 23:48:17 UTC 2015
This is an automated email from the git hooks/post-receive script.
vdanjean pushed a commit to branch master
in repository picard-tools.
commit d9e0f5ac0bc39f9a34527f21610f674e81df3371
Merge: 688437a 4957015
Author: Vincent Danjean <vdanjean at debian.org>
Date: Sun Sep 6 23:38:25 2015 +0200
Merge tag 'upstream/1.138+dfsg.1' into sid
Upstream version 1.138+dfsg.1
.dockerignore | 18 +
.gitignore | 6 +-
.travis.yml | 12 +
Dockerfile | 31 +
Picard-public.iml | 40 +-
Picard-public.ipr | 6 +-
README.md | 56 +
build-tribble.xml | 183 -
build.sbt | 142 +
build.xml | 528 +-
project/plugins.sbt | 5 +
src/c/inteldeflater/IntelDeflater.c | 247 -
src/java/net/sf/picard/PicardException.java | 43 -
src/java/net/sf/picard/Test.java | 57 -
.../picard/analysis/AlignmentSummaryMetrics.java | 162 -
.../analysis/AlignmentSummaryMetricsCollector.java | 385 -
.../analysis/CollectAlignmentSummaryMetrics.java | 123 -
.../sf/picard/analysis/CollectGcBiasMetrics.java | 327 -
.../picard/analysis/CollectInsertSizeMetrics.java | 155 -
.../sf/picard/analysis/CollectMultipleMetrics.java | 140 -
.../sf/picard/analysis/CollectRnaSeqMetrics.java | 148 -
.../net/sf/picard/analysis/CollectWgsMetrics.java | 274 -
.../sf/picard/analysis/GcBiasDetailMetrics.java | 63 -
.../sf/picard/analysis/GcBiasSummaryMetrics.java | 56 -
.../net/sf/picard/analysis/InsertSizeMetrics.java | 94 -
.../net/sf/picard/analysis/MeanQualityByCycle.java | 204 -
.../picard/analysis/MetricAccumulationLevel.java | 32 -
.../picard/analysis/QualityScoreDistribution.java | 150 -
src/java/net/sf/picard/analysis/RnaSeqMetrics.java | 111 -
.../sf/picard/analysis/SinglePassSamProgram.java | 158 -
.../analysis/directed/CalculateHsMetrics.java | 87 -
.../analysis/directed/CollectTargetedMetrics.java | 151 -
.../directed/CollectTargetedPcrMetrics.java | 62 -
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.../net/sf/picard/analysis/directed/HsMetrics.java | 194 -
.../directed/InsertSizeMetricsCollector.java | 205 -
.../analysis/directed/RnaSeqMetricsCollector.java | 391 -
.../analysis/directed/TargetMetricsCollector.java | 748 -
.../analysis/directed/TargetedPcrMetrics.java | 119 -
.../directed/TargetedPcrMetricsCollector.java | 58 -
.../sf/picard/annotation/AnnotationException.java | 40 -
src/java/net/sf/picard/annotation/Gene.java | 222 -
.../sf/picard/annotation/GeneAnnotationReader.java | 39 -
.../net/sf/picard/annotation/LocusFunction.java | 33 -
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src/java/net/sf/picard/cmdline/NestedOptions.java | 39 -
src/java/net/sf/picard/cmdline/Option.java | 80 -
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src/java/net/sf/picard/cmdline/Usage.java | 40 -
src/java/net/sf/picard/fastq/AsyncFastqWriter.java | 20 -
src/java/net/sf/picard/fastq/BamToBfq.java | 93 -
src/java/net/sf/picard/fastq/BamToBfqWriter.java | 441 -
src/java/net/sf/picard/fastq/BasicFastqWriter.java | 88 -
.../sf/picard/fastq/Casava18ReadNameEncoder.java | 46 -
src/java/net/sf/picard/fastq/FastqConstants.java | 32 -
src/java/net/sf/picard/fastq/FastqReader.java | 177 -
src/java/net/sf/picard/fastq/FastqRecord.java | 49 -
src/java/net/sf/picard/fastq/FastqWriter.java | 13 -
.../net/sf/picard/fastq/FastqWriterFactory.java | 31 -
.../sf/picard/fastq/IlluminaReadNameEncoder.java | 28 -
src/java/net/sf/picard/fastq/ReadNameEncoder.java | 17 -
src/java/net/sf/picard/filter/AggregateFilter.java | 79 -
src/java/net/sf/picard/filter/AlignedFilter.java | 87 -
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.../net/sf/picard/filter/FilteringIterator.java | 154 -
src/java/net/sf/picard/filter/IntervalFilter.java | 99 -
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src/java/net/sf/picard/filter/ReadNameFilter.java | 119 -
src/java/net/sf/picard/filter/SamRecordFilter.java | 53 -
.../sf/picard/filter/SecondaryAlignmentFilter.java | 20 -
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src/java/net/sf/picard/filter/TagFilter.java | 85 -
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.../sf/picard/illumina/IlluminaBasecallsToSam.java | 525 -
.../sf/picard/illumina/MarkIlluminaAdapters.java | 256 -
.../sf/picard/illumina/parser/BarcodeParser.java | 84 -
.../net/sf/picard/illumina/parser/BclData.java | 30 -
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.../net/sf/picard/illumina/parser/ClusterData.java | 200 -
.../parser/ClusterIntensityFileReader.java | 213 -
.../illumina/parser/CycleIlluminaFileMap.java | 75 -
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.../sf/picard/illumina/parser/IlluminaData.java | 69 -
.../illumina/parser/IlluminaDataProvider.java | 230 -
.../parser/IlluminaDataProviderFactory.java | 367 -
.../picard/illumina/parser/IlluminaDataType.java | 35 -
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.../parser/IlluminaFileNotFoundException.java | 44 -
.../picard/illumina/parser/IlluminaFileUtil.java | 256 -
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.../illumina/parser/PerTilePerCycleFileUtil.java | 268 -
.../net/sf/picard/illumina/parser/PosParser.java | 133 -
src/java/net/sf/picard/illumina/parser/Range.java | 65 -
.../net/sf/picard/illumina/parser/ReadData.java | 96 -
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.../net/sf/picard/illumina/parser/ReadType.java | 39 -
src/java/net/sf/picard/illumina/parser/Tile.java | 114 -
.../net/sf/picard/illumina/parser/TileIndex.java | 162 -
.../sf/picard/illumina/parser/TileMetricsUtil.java | 154 -
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.../illumina/parser/fakers/BarcodeFileFaker.java | 25 -
.../illumina/parser/fakers/BciFileFaker.java | 52 -
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.../illumina/parser/fakers/ClocsFileFaker.java | 25 -
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.../illumina/parser/fakers/LocsFileFaker.java | 28 -
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.../illumina/parser/fakers/PosFileFaker.java | 25 -
.../AbstractIlluminaPositionFileReader.java | 177 -
.../illumina/parser/readers/BarcodeFileReader.java | 52 -
.../illumina/parser/readers/BclIndexReader.java | 75 -
.../readers/BclQualityEvaluationStrategy.java | 95 -
.../picard/illumina/parser/readers/BclReader.java | 343 -
.../illumina/parser/readers/ClocsFileReader.java | 157 -
.../illumina/parser/readers/FilterFileReader.java | 114 -
.../illumina/parser/readers/LocsFileReader.java | 119 -
.../parser/readers/MMapBackedIteratorFactory.java | 298 -
.../illumina/parser/readers/PosFileReader.java | 89 -
.../parser/readers/TileMetricsOutReader.java | 167 -
src/java/net/sf/picard/io/FastLineReader.java | 171 -
src/java/net/sf/picard/io/IoUtil.java | 686 -
src/java/net/sf/picard/liftover/Chain.java | 410 -
src/java/net/sf/picard/liftover/LiftOver.java | 292 -
src/java/net/sf/picard/metrics/Header.java | 41 -
src/java/net/sf/picard/metrics/MetricBase.java | 128 -
src/java/net/sf/picard/metrics/MetricsFile.java | 521 -
.../net/sf/picard/metrics/MultiLevelCollector.java | 335 -
.../net/sf/picard/metrics/MultilevelMetrics.java | 16 -
.../sf/picard/metrics/PerUnitMetricCollector.java | 58 -
.../sf/picard/metrics/SAMRecordAndReference.java | 22 -
.../SAMRecordAndReferenceMultiLevelCollector.java | 14 -
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src/java/net/sf/picard/metrics/StringHeader.java | 72 -
src/java/net/sf/picard/metrics/VersionHeader.java | 81 -
src/java/net/sf/picard/pedigree/PedFile.java | 147 -
src/java/net/sf/picard/pedigree/Sex.java | 26 -
.../reference/AbstractFastaSequenceFile.java | 126 -
.../net/sf/picard/reference/ExtractSequences.java | 108 -
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src/java/net/sf/picard/sam/AddCommentsToBam.java | 57 -
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src/java/net/sf/picard/sam/BamIndexStats.java | 77 -
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src/java/net/sf/picard/sam/BuildBamIndex.java | 149 -
src/java/net/sf/picard/sam/CleanSam.java | 103 -
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src/java/net/sf/picard/sam/CompareSAMs.java | 515 -
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src/java/net/sf/picard/sam/DiskReadEndsMap.java | 107 -
src/java/net/sf/picard/sam/DownsampleSam.java | 93 -
src/java/net/sf/picard/sam/DuplicationMetrics.java | 203 -
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.../sf/picard/sam/EstimateLibraryComplexity.java | 487 -
src/java/net/sf/picard/sam/FastqToSam.java | 362 -
src/java/net/sf/picard/sam/FilterSamReads.java | 233 -
src/java/net/sf/picard/sam/FixMateInformation.java | 292 -
src/java/net/sf/picard/sam/GatherBamFiles.java | 97 -
src/java/net/sf/picard/sam/HitsForInsert.java | 283 -
src/java/net/sf/picard/sam/MarkDuplicates.java | 772 -
src/java/net/sf/picard/sam/MergeBamAlignment.java | 285 -
src/java/net/sf/picard/sam/MergeSamFiles.java | 166 -
.../sf/picard/sam/MergingSamRecordIterator.java | 245 -
...stDistantPrimaryAlignmentSelectionStrategy.java | 183 -
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src/java/net/sf/picard/sam/RAMReadEndsMap.java | 72 -
src/java/net/sf/picard/sam/ReadEnds.java | 63 -
src/java/net/sf/picard/sam/ReadEndsCodec.java | 106 -
src/java/net/sf/picard/sam/ReadEndsMap.java | 59 -
src/java/net/sf/picard/sam/ReorderSam.java | 233 -
src/java/net/sf/picard/sam/ReplaceSamHeader.java | 114 -
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src/java/net/sf/picard/sam/RevertSam.java | 343 -
src/java/net/sf/picard/sam/SamAlignmentMerger.java | 353 -
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src/java/net/sf/picard/sam/SamFileValidator.java | 800 -
src/java/net/sf/picard/sam/SamFormatConverter.java | 80 -
src/java/net/sf/picard/sam/SamToFastq.java | 438 -
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src/java/net/sf/picard/util/CigarUtil.java | 289 -
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src/java/net/sf/picard/util/FormatUtil.java | 181 -
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src/java/net/sf/picard/util/ListMap.java | 48 -
src/java/net/sf/picard/util/Locus.java | 36 -
src/java/net/sf/picard/util/LocusComparator.java | 39 -
src/java/net/sf/picard/util/LocusImpl.java | 49 -
src/java/net/sf/picard/util/Log.java | 211 -
src/java/net/sf/picard/util/MathUtil.java | 277 -
src/java/net/sf/picard/util/MergingIterator.java | 147 -
src/java/net/sf/picard/util/MetricsDoclet.java | 179 -
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src/java/net/sf/picard/util/PeekableIterator.java | 82 -
src/java/net/sf/picard/util/ProcessExecutor.java | 235 -
src/java/net/sf/picard/util/ProgressLogger.java | 136 -
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src/java/net/sf/picard/util/SamLocusIterator.java | 498 -
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src/java/net/sf/picard/util/TabbedInputParser.java | 64 -
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src/java/net/sf/picard/util/UnsignedTypeUtil.java | 28 -
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src/java/net/sf/picard/vcf/MakeSitesOnlyVcf.java | 105 -
src/java/net/sf/picard/vcf/MergeVcfs.java | 159 -
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src/java/net/sf/picard/vcf/VcfFormatConverter.java | 117 -
src/java/net/sf/samtools/AbstractBAMFileIndex.java | 636 -
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.../illumina/25T8B25T/fastq/CAATAGTC.1.fastq | 28 -
.../illumina/25T8B25T/fastq/CAATAGTC.2.fastq | 28 -
.../25T8B25T/fastq/CAATAGTC.barcode_1.fastq | 28 -
.../illumina/25T8B25T/fastq/CAGCGGTA.1.fastq | 20 -
.../illumina/25T8B25T/fastq/CAGCGGTA.2.fastq | 20 -
.../25T8B25T/fastq/CAGCGGTA.barcode_1.fastq | 20 -
.../illumina/25T8B25T/fastq/CCAACATT.1.fastq | 28 -
.../illumina/25T8B25T/fastq/CCAACATT.2.fastq | 28 -
.../25T8B25T/fastq/CCAACATT.barcode_1.fastq | 28 -
.../illumina/25T8B25T/fastq/CCAGCACC.1.fastq | 12 -
.../illumina/25T8B25T/fastq/CCAGCACC.2.fastq | 12 -
.../25T8B25T/fastq/CCAGCACC.barcode_1.fastq | 12 -
.../illumina/25T8B25T/fastq/CGCCTTCC.1.fastq | 8 -
.../illumina/25T8B25T/fastq/CGCCTTCC.2.fastq | 8 -
.../25T8B25T/fastq/CGCCTTCC.barcode_1.fastq | 8 -
.../illumina/25T8B25T/fastq/CGCTATGT.1.fastq | 20 -
.../illumina/25T8B25T/fastq/CGCTATGT.2.fastq | 20 -
.../25T8B25T/fastq/CGCTATGT.barcode_1.fastq | 20 -
.../illumina/25T8B25T/fastq/CTAACTCG.1.fastq | 16 -
.../illumina/25T8B25T/fastq/CTAACTCG.2.fastq | 16 -
.../25T8B25T/fastq/CTAACTCG.barcode_1.fastq | 16 -
.../illumina/25T8B25T/fastq/CTATGCGT.1.fastq | 28 -
.../illumina/25T8B25T/fastq/CTATGCGT.2.fastq | 28 -
.../25T8B25T/fastq/CTATGCGT.barcode_1.fastq | 28 -
.../illumina/25T8B25T/fastq/CTGCGGAT.1.fastq | 12 -
.../illumina/25T8B25T/fastq/CTGCGGAT.2.fastq | 12 -
.../25T8B25T/fastq/CTGCGGAT.barcode_1.fastq | 12 -
.../illumina/25T8B25T/fastq/CTGTAATC.1.fastq | 24 -
.../illumina/25T8B25T/fastq/CTGTAATC.2.fastq | 24 -
.../25T8B25T/fastq/CTGTAATC.barcode_1.fastq | 24 -
.../illumina/25T8B25T/fastq/GAAGGAAG.1.fastq | 12 -
.../illumina/25T8B25T/fastq/GAAGGAAG.2.fastq | 12 -
.../25T8B25T/fastq/GAAGGAAG.barcode_1.fastq | 12 -
.../illumina/25T8B25T/fastq/GACCAGGA.1.fastq | 28 -
.../illumina/25T8B25T/fastq/GACCAGGA.2.fastq | 28 -
.../25T8B25T/fastq/GACCAGGA.barcode_1.fastq | 28 -
.../illumina/25T8B25T/fastq/GACCGTTG.1.fastq | 16 -
.../illumina/25T8B25T/fastq/GACCGTTG.2.fastq | 16 -
.../25T8B25T/fastq/GACCGTTG.barcode_1.fastq | 16 -
.../illumina/25T8B25T/fastq/GACCTAAC.1.fastq | 4 -
.../illumina/25T8B25T/fastq/GACCTAAC.2.fastq | 4 -
.../25T8B25T/fastq/GACCTAAC.barcode_1.fastq | 4 -
.../illumina/25T8B25T/fastq/GATATCCA.1.fastq | 12 -
.../illumina/25T8B25T/fastq/GATATCCA.2.fastq | 12 -
.../25T8B25T/fastq/GATATCCA.barcode_1.fastq | 12 -
.../illumina/25T8B25T/fastq/GCCGTCGA.1.fastq | 20 -
.../illumina/25T8B25T/fastq/GCCGTCGA.2.fastq | 20 -
.../25T8B25T/fastq/GCCGTCGA.barcode_1.fastq | 20 -
.../illumina/25T8B25T/fastq/GCCTAGCC.1.fastq | 20 -
.../illumina/25T8B25T/fastq/GCCTAGCC.2.fastq | 20 -
.../25T8B25T/fastq/GCCTAGCC.barcode_1.fastq | 20 -
.../illumina/25T8B25T/fastq/GTAACATC.1.fastq | 8 -
.../illumina/25T8B25T/fastq/GTAACATC.2.fastq | 8 -
.../25T8B25T/fastq/GTAACATC.barcode_1.fastq | 8 -
.../illumina/25T8B25T/fastq/GTCCACAG.1.fastq | 8 -
.../illumina/25T8B25T/fastq/GTCCACAG.2.fastq | 8 -
.../25T8B25T/fastq/GTCCACAG.barcode_1.fastq | 8 -
.../sf/picard/illumina/25T8B25T/fastq/N.1.fastq | 64 -
.../sf/picard/illumina/25T8B25T/fastq/N.2.fastq | 64 -
.../illumina/25T8B25T/fastq/N.barcode_1.fastq | 64 -
.../illumina/25T8B25T/fastq/TAAGCACA.1.fastq | 8 -
.../illumina/25T8B25T/fastq/TAAGCACA.2.fastq | 8 -
.../25T8B25T/fastq/TAAGCACA.barcode_1.fastq | 8 -
.../illumina/25T8B25T/fastq/TATCCAGG.1.fastq | 16 -
.../illumina/25T8B25T/fastq/TATCCAGG.2.fastq | 16 -
.../25T8B25T/fastq/TATCCAGG.barcode_1.fastq | 16 -
.../illumina/25T8B25T/fastq/TATCTGCC.1.fastq | 28 -
.../illumina/25T8B25T/fastq/TATCTGCC.2.fastq | 28 -
.../25T8B25T/fastq/TATCTGCC.barcode_1.fastq | 28 -
.../illumina/25T8B25T/fastq/TCGCTAGA.1.fastq | 20 -
.../illumina/25T8B25T/fastq/TCGCTAGA.2.fastq | 20 -
.../25T8B25T/fastq/TCGCTAGA.barcode_1.fastq | 20 -
.../illumina/25T8B25T/fastq/TCTGCAAG.1.fastq | 4 -
.../illumina/25T8B25T/fastq/TCTGCAAG.2.fastq | 4 -
.../25T8B25T/fastq/TCTGCAAG.barcode_1.fastq | 4 -
.../illumina/25T8B25T/fastq/TGCAAGTA.1.fastq | 8 -
.../illumina/25T8B25T/fastq/TGCAAGTA.2.fastq | 8 -
.../25T8B25T/fastq/TGCAAGTA.barcode_1.fastq | 8 -
.../illumina/25T8B25T/fastq/TGCTGCTG.1.fastq | 16 -
.../illumina/25T8B25T/fastq/TGCTGCTG.2.fastq | 16 -
.../25T8B25T/fastq/TGCTGCTG.barcode_1.fastq | 16 -
.../illumina/25T8B25T/fastq/TGTAACTC.1.fastq | 4 -
.../illumina/25T8B25T/fastq/TGTAACTC.2.fastq | 4 -
.../25T8B25T/fastq/TGTAACTC.barcode_1.fastq | 4 -
.../illumina/25T8B25T/fastq/TGTAATCA.1.fastq | 12 -
.../illumina/25T8B25T/fastq/TGTAATCA.2.fastq | 12 -
.../25T8B25T/fastq/TGTAATCA.barcode_1.fastq | 12 -
.../illumina/25T8B25T/fastq/TTGTCTAT.1.fastq | 16 -
.../illumina/25T8B25T/fastq/TTGTCTAT.2.fastq | 16 -
.../25T8B25T/fastq/TTGTCTAT.barcode_1.fastq | 16 -
.../illumina/25T8B25T/fastq/nonBarcoded.1.fastq | 720 -
.../illumina/25T8B25T/fastq/nonBarcoded.2.fastq | 720 -
.../sf/picard/illumina/25T8B25T/sams/AAAAAAAA.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/AAAAGAAG.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/AACAATGG.sam | 10 -
.../sf/picard/illumina/25T8B25T/sams/AACGCATT.sam | 16 -
.../sf/picard/illumina/25T8B25T/sams/ACAAAATT.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/ACAGGTAT.sam | 10 -
.../sf/picard/illumina/25T8B25T/sams/ACAGTTGA.sam | 6 -
.../sf/picard/illumina/25T8B25T/sams/ACCAGTTG.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/ACGAAATC.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/ACTAAGAC.sam | 10 -
.../sf/picard/illumina/25T8B25T/sams/ACTGTACC.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/ACTGTATC.sam | 10 -
.../sf/picard/illumina/25T8B25T/sams/AGAAAAGA.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/AGCATGGA.sam | 8 -
.../sf/picard/illumina/25T8B25T/sams/AGGTAAGG.sam | 10 -
.../sf/picard/illumina/25T8B25T/sams/AGGTCGCA.sam | 10 -
.../sf/picard/illumina/25T8B25T/sams/ATTATCAA.sam | 12 -
.../sf/picard/illumina/25T8B25T/sams/ATTCCTCT.sam | 10 -
.../sf/picard/illumina/25T8B25T/sams/CAACTCTC.sam | 12 -
.../sf/picard/illumina/25T8B25T/sams/CAATAGAC.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/CAATAGTC.sam | 16 -
.../sf/picard/illumina/25T8B25T/sams/CAGCGGAT.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/CAGCGGTA.sam | 12 -
.../sf/picard/illumina/25T8B25T/sams/CCAACATT.sam | 16 -
.../sf/picard/illumina/25T8B25T/sams/CCAGCACC.sam | 8 -
.../sf/picard/illumina/25T8B25T/sams/CCATGCGT.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/CGCCTTCC.sam | 6 -
.../sf/picard/illumina/25T8B25T/sams/CGCTATGT.sam | 12 -
.../sf/picard/illumina/25T8B25T/sams/CTAACTCG.sam | 10 -
.../sf/picard/illumina/25T8B25T/sams/CTATGCGC.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/CTATGCGT.sam | 16 -
.../sf/picard/illumina/25T8B25T/sams/CTGCGGAT.sam | 8 -
.../sf/picard/illumina/25T8B25T/sams/CTGTAATC.sam | 14 -
.../sf/picard/illumina/25T8B25T/sams/GAAAAAAA.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/GAACGAT..sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/GAAGGAAG.sam | 8 -
.../sf/picard/illumina/25T8B25T/sams/GACCAGGA.sam | 16 -
.../sf/picard/illumina/25T8B25T/sams/GACCAGGC.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/GACCGTTG.sam | 10 -
.../sf/picard/illumina/25T8B25T/sams/GACCTAAC.sam | 4 -
.../sf/picard/illumina/25T8B25T/sams/GATATCCA.sam | 8 -
.../sf/picard/illumina/25T8B25T/sams/GCCGTCGA.sam | 12 -
.../sf/picard/illumina/25T8B25T/sams/GCCTAGCC.sam | 12 -
.../sf/picard/illumina/25T8B25T/sams/GTAACATC.sam | 6 -
.../sf/picard/illumina/25T8B25T/sams/GTCCACAG.sam | 6 -
.../net/sf/picard/illumina/25T8B25T/sams/N.sam | 34 -
.../sf/picard/illumina/25T8B25T/sams/TAAGCACA.sam | 6 -
.../sf/picard/illumina/25T8B25T/sams/TACCGTCT.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/TAGCGGTA.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/TATCAGCC.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/TATCCAGG.sam | 10 -
.../sf/picard/illumina/25T8B25T/sams/TATCCATG.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/TATCTCGG.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/TATCTGCC.sam | 16 -
.../sf/picard/illumina/25T8B25T/sams/TCCGTCTA.sam | 2 -
.../sf/picard/illumina/25T8B25T/sams/TCGCTAGA.sam | 12 -
.../sf/picard/illumina/25T8B25T/sams/TCTGCAAG.sam | 4 -
.../sf/picard/illumina/25T8B25T/sams/TGCAAGTA.sam | 6 -
.../sf/picard/illumina/25T8B25T/sams/TGCTGCTG.sam | 10 -
.../sf/picard/illumina/25T8B25T/sams/TGTAACTC.sam | 4 -
.../sf/picard/illumina/25T8B25T/sams/TGTAATCA.sam | 8 -
.../sf/picard/illumina/25T8B25T/sams/TTGTCTAT.sam | 10 -
.../picard/illumina/25T8B25T/sams/nonBarcoded.sam | 182 -
.../25T8B8B25T/fastq/AACTTGACGCTCTCTT.1.fastq | 4 -
.../25T8B8B25T/fastq/AACTTGACGCTCTCTT.2.fastq | 4 -
.../fastq/AACTTGACGCTCTCTT.barcode_1.fastq | 4 -
.../fastq/AACTTGACGCTCTCTT.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/AAGACACTAGTCACCT.1.fastq | 4 -
.../25T8B8B25T/fastq/AAGACACTAGTCACCT.2.fastq | 4 -
.../fastq/AAGACACTAGTCACCT.barcode_1.fastq | 4 -
.../fastq/AAGACACTAGTCACCT.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/ACAGGTATCACTTCAT.1.fastq | 4 -
.../25T8B8B25T/fastq/ACAGGTATCACTTCAT.2.fastq | 4 -
.../fastq/ACAGGTATCACTTCAT.barcode_1.fastq | 4 -
.../fastq/ACAGGTATCACTTCAT.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/ACAGTTGAATCTTCTC.1.fastq | 8 -
.../25T8B8B25T/fastq/ACAGTTGAATCTTCTC.2.fastq | 8 -
.../fastq/ACAGTTGAATCTTCTC.barcode_1.fastq | 8 -
.../fastq/ACAGTTGAATCTTCTC.barcode_2.fastq | 8 -
.../25T8B8B25T/fastq/ACCAACTGCATCACTT.1.fastq | 4 -
.../25T8B8B25T/fastq/ACCAACTGCATCACTT.2.fastq | 4 -
.../fastq/ACCAACTGCATCACTT.barcode_1.fastq | 4 -
.../fastq/ACCAACTGCATCACTT.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/ACTAAGACGTCCTCAT.1.fastq | 4 -
.../25T8B8B25T/fastq/ACTAAGACGTCCTCAT.2.fastq | 4 -
.../fastq/ACTAAGACGTCCTCAT.barcode_1.fastq | 4 -
.../fastq/ACTAAGACGTCCTCAT.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/AGGTGCGAGACATTAA.1.fastq | 4 -
.../25T8B8B25T/fastq/AGGTGCGAGACATTAA.2.fastq | 4 -
.../fastq/AGGTGCGAGACATTAA.barcode_1.fastq | 4 -
.../fastq/AGGTGCGAGACATTAA.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/AGGTTATCTTAGCCAG.1.fastq | 4 -
.../25T8B8B25T/fastq/AGGTTATCTTAGCCAG.2.fastq | 4 -
.../fastq/AGGTTATCTTAGCCAG.barcode_1.fastq | 4 -
.../fastq/AGGTTATCTTAGCCAG.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/AGTTGCTTTGACTTGG.1.fastq | 4 -
.../25T8B8B25T/fastq/AGTTGCTTTGACTTGG.2.fastq | 4 -
.../fastq/AGTTGCTTTGACTTGG.barcode_1.fastq | 4 -
.../fastq/AGTTGCTTTGACTTGG.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/ATAGCGTCTTGGTCTG.1.fastq | 4 -
.../25T8B8B25T/fastq/ATAGCGTCTTGGTCTG.2.fastq | 4 -
.../fastq/ATAGCGTCTTGGTCTG.barcode_1.fastq | 4 -
.../fastq/ATAGCGTCTTGGTCTG.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/CAATAGTCCGACTCTC.1.fastq | 4 -
.../25T8B8B25T/fastq/CAATAGTCCGACTCTC.2.fastq | 4 -
.../fastq/CAATAGTCCGACTCTC.barcode_1.fastq | 4 -
.../fastq/CAATAGTCCGACTCTC.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/CAGCAAGGGCGATATT.1.fastq | 4 -
.../25T8B8B25T/fastq/CAGCAAGGGCGATATT.2.fastq | 4 -
.../fastq/CAGCAAGGGCGATATT.barcode_1.fastq | 4 -
.../fastq/CAGCAAGGGCGATATT.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/CAGCGGTAAGTACTGC.1.fastq | 4 -
.../25T8B8B25T/fastq/CAGCGGTAAGTACTGC.2.fastq | 4 -
.../fastq/CAGCGGTAAGTACTGC.barcode_1.fastq | 4 -
.../fastq/CAGCGGTAAGTACTGC.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/CATGCTTATAGCATTG.1.fastq | 8 -
.../25T8B8B25T/fastq/CATGCTTATAGCATTG.2.fastq | 8 -
.../fastq/CATGCTTATAGCATTG.barcode_1.fastq | 8 -
.../fastq/CATGCTTATAGCATTG.barcode_2.fastq | 8 -
.../25T8B8B25T/fastq/CCAGAGCTCAACTGAT.1.fastq | 8 -
.../25T8B8B25T/fastq/CCAGAGCTCAACTGAT.2.fastq | 8 -
.../fastq/CCAGAGCTCAACTGAT.barcode_1.fastq | 8 -
.../fastq/CCAGAGCTCAACTGAT.barcode_2.fastq | 8 -
.../25T8B8B25T/fastq/CCCGATTTTCTCTCCC.1.fastq | 0
.../25T8B8B25T/fastq/CCCGATTTTCTCTCCC.2.fastq | 0
.../fastq/CCCGATTTTCTCTCCC.barcode_1.fastq | 0
.../fastq/CCCGATTTTCTCTCCC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CCTATGCCAATTGGCC.1.fastq | 4 -
.../25T8B8B25T/fastq/CCTATGCCAATTGGCC.2.fastq | 4 -
.../fastq/CCTATGCCAATTGGCC.barcode_1.fastq | 4 -
.../fastq/CCTATGCCAATTGGCC.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/CCTATTCTTCGTTTTC.1.fastq | 0
.../25T8B8B25T/fastq/CCTATTCTTCGTTTTC.2.fastq | 0
.../fastq/CCTATTCTTCGTTTTC.barcode_1.fastq | 0
.../fastq/CCTATTCTTCGTTTTC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CCTCTTCTCTCGCTTT.1.fastq | 0
.../25T8B8B25T/fastq/CCTCTTCTCTCGCTTT.2.fastq | 0
.../fastq/CCTCTTCTCTCGCTTT.barcode_1.fastq | 0
.../fastq/CCTCTTCTCTCGCTTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CCTCTTTCTTCTGCTC.1.fastq | 0
.../25T8B8B25T/fastq/CCTCTTTCTTCTGCTC.2.fastq | 0
.../fastq/CCTCTTTCTTCTGCTC.barcode_1.fastq | 0
.../fastq/CCTCTTTCTTCTGCTC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CCTTCGCAGAATCGAC.1.fastq | 4 -
.../25T8B8B25T/fastq/CCTTCGCAGAATCGAC.2.fastq | 4 -
.../fastq/CCTTCGCAGAATCGAC.barcode_1.fastq | 4 -
.../fastq/CCTTCGCAGAATCGAC.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/CCTTCTTTTATCATTT.1.fastq | 0
.../25T8B8B25T/fastq/CCTTCTTTTATCATTT.2.fastq | 0
.../fastq/CCTTCTTTTATCATTT.barcode_1.fastq | 0
.../fastq/CCTTCTTTTATCATTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CGCTATGTTTCACCTT.1.fastq | 4 -
.../25T8B8B25T/fastq/CGCTATGTTTCACCTT.2.fastq | 4 -
.../fastq/CGCTATGTTTCACCTT.barcode_1.fastq | 4 -
.../fastq/CGCTATGTTTCACCTT.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/CGCTATGTTTCTCCTT.1.fastq | 0
.../25T8B8B25T/fastq/CGCTATGTTTCTCCTT.2.fastq | 0
.../fastq/CGCTATGTTTCTCCTT.barcode_1.fastq | 0
.../fastq/CGCTATGTTTCTCCTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CTACCAGGTTCTTGGC.1.fastq | 4 -
.../25T8B8B25T/fastq/CTACCAGGTTCTTGGC.2.fastq | 4 -
.../fastq/CTACCAGGTTCTTGGC.barcode_1.fastq | 4 -
.../fastq/CTACCAGGTTCTTGGC.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/CTCCCTCTTCCTTCTT.1.fastq | 0
.../25T8B8B25T/fastq/CTCCCTCTTCCTTCTT.2.fastq | 0
.../fastq/CTCCCTCTTCCTTCTT.barcode_1.fastq | 0
.../fastq/CTCCCTCTTCCTTCTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CTGTAATCCTATTAGC.1.fastq | 4 -
.../25T8B8B25T/fastq/CTGTAATCCTATTAGC.2.fastq | 4 -
.../fastq/CTGTAATCCTATTAGC.barcode_1.fastq | 4 -
.../fastq/CTGTAATCCTATTAGC.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/GACCAGGACCATCACA.1.fastq | 4 -
.../25T8B8B25T/fastq/GACCAGGACCATCACA.2.fastq | 4 -
.../fastq/GACCAGGACCATCACA.barcode_1.fastq | 4 -
.../fastq/GACCAGGACCATCACA.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/GCCGTCGAAGGTACCA.1.fastq | 8 -
.../25T8B8B25T/fastq/GCCGTCGAAGGTACCA.2.fastq | 8 -
.../fastq/GCCGTCGAAGGTACCA.barcode_1.fastq | 8 -
.../fastq/GCCGTCGAAGGTACCA.barcode_2.fastq | 8 -
.../25T8B8B25T/fastq/GCCGTCGAAGGTACCC.1.fastq | 0
.../25T8B8B25T/fastq/GCCGTCGAAGGTACCC.2.fastq | 0
.../fastq/GCCGTCGAAGGTACCC.barcode_1.fastq | 0
.../fastq/GCCGTCGAAGGTACCC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/GCCGTCGATGGTACCC.1.fastq | 0
.../25T8B8B25T/fastq/GCCGTCGATGGTACCC.2.fastq | 0
.../fastq/GCCGTCGATGGTACCC.barcode_1.fastq | 0
.../fastq/GCCGTCGATGGTACCC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/GCCTAGCCCTTGAATC.1.fastq | 4 -
.../25T8B8B25T/fastq/GCCTAGCCCTTGAATC.2.fastq | 4 -
.../fastq/GCCTAGCCCTTGAATC.barcode_1.fastq | 4 -
.../fastq/GCCTAGCCCTTGAATC.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/GCTATCCACCTCCCCC.1.fastq | 0
.../25T8B8B25T/fastq/GCTATCCACCTCCCCC.2.fastq | 0
.../fastq/GCTATCCACCTCCCCC.barcode_1.fastq | 0
.../fastq/GCTATCCACCTCCCCC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/GTATAACAAATTCAAC.1.fastq | 4 -
.../25T8B8B25T/fastq/GTATAACAAATTCAAC.2.fastq | 4 -
.../fastq/GTATAACAAATTCAAC.barcode_1.fastq | 4 -
.../fastq/GTATAACAAATTCAAC.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/GTATAACATATTCAAC.1.fastq | 0
.../25T8B8B25T/fastq/GTATAACATATTCAAC.2.fastq | 0
.../fastq/GTATAACATATTCAAC.barcode_1.fastq | 0
.../fastq/GTATAACATATTCAAC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/GTCTGATGGAACTTCG.1.fastq | 4 -
.../25T8B8B25T/fastq/GTCTGATGGAACTTCG.2.fastq | 4 -
.../fastq/GTCTGATGGAACTTCG.barcode_1.fastq | 4 -
.../fastq/GTCTGATGGAACTTCG.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/GTCTGATGTCACTTCC.1.fastq | 0
.../25T8B8B25T/fastq/GTCTGATGTCACTTCC.2.fastq | 0
.../fastq/GTCTGATGTCACTTCC.barcode_1.fastq | 0
.../fastq/GTCTGATGTCACTTCC.barcode_2.fastq | 0
.../sf/picard/illumina/25T8B8B25T/fastq/NN.1.fastq | 76 -
.../sf/picard/illumina/25T8B8B25T/fastq/NN.2.fastq | 76 -
.../illumina/25T8B8B25T/fastq/NN.barcode_1.fastq | 76 -
.../illumina/25T8B8B25T/fastq/NN.barcode_2.fastq | 76 -
.../25T8B8B25T/fastq/TACTTAGCGTCTGCAC.1.fastq | 8 -
.../25T8B8B25T/fastq/TACTTAGCGTCTGCAC.2.fastq | 8 -
.../fastq/TACTTAGCGTCTGCAC.barcode_1.fastq | 8 -
.../fastq/TACTTAGCGTCTGCAC.barcode_2.fastq | 8 -
.../25T8B8B25T/fastq/TCCCCGTTCCAACTTC.1.fastq | 0
.../25T8B8B25T/fastq/TCCCCGTTCCAACTTC.2.fastq | 0
.../fastq/TCCCCGTTCCAACTTC.barcode_1.fastq | 0
.../fastq/TCCCCGTTCCAACTTC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/TCCTTGGTGCTGCACT.1.fastq | 4 -
.../25T8B8B25T/fastq/TCCTTGGTGCTGCACT.2.fastq | 4 -
.../fastq/TCCTTGGTGCTGCACT.barcode_1.fastq | 4 -
.../fastq/TCCTTGGTGCTGCACT.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/TCGCCTTGCCAACGCT.1.fastq | 4 -
.../25T8B8B25T/fastq/TCGCCTTGCCAACGCT.2.fastq | 4 -
.../fastq/TCGCCTTGCCAACGCT.barcode_1.fastq | 4 -
.../fastq/TCGCCTTGCCAACGCT.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/TGCAAGTACGAACTTC.1.fastq | 8 -
.../25T8B8B25T/fastq/TGCAAGTACGAACTTC.2.fastq | 8 -
.../fastq/TGCAAGTACGAACTTC.barcode_1.fastq | 8 -
.../fastq/TGCAAGTACGAACTTC.barcode_2.fastq | 8 -
.../25T8B8B25T/fastq/TGCTCGACTTCACAGA.1.fastq | 4 -
.../25T8B8B25T/fastq/TGCTCGACTTCACAGA.2.fastq | 4 -
.../fastq/TGCTCGACTTCACAGA.barcode_1.fastq | 4 -
.../fastq/TGCTCGACTTCACAGA.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/TGCTCGACTTCACAGT.1.fastq | 0
.../25T8B8B25T/fastq/TGCTCGACTTCACAGT.2.fastq | 0
.../fastq/TGCTCGACTTCACAGT.barcode_1.fastq | 0
.../fastq/TGCTCGACTTCACAGT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/TGTAATCACCTCTAAC.1.fastq | 4 -
.../25T8B8B25T/fastq/TGTAATCACCTCTAAC.2.fastq | 4 -
.../fastq/TGTAATCACCTCTAAC.barcode_1.fastq | 4 -
.../fastq/TGTAATCACCTCTAAC.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/TGTATCTCTTACTCTT.1.fastq | 0
.../25T8B8B25T/fastq/TGTATCTCTTACTCTT.2.fastq | 0
.../fastq/TGTATCTCTTACTCTT.barcode_1.fastq | 0
.../fastq/TGTATCTCTTACTCTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/TGTCGGTTTTTTGCTT.1.fastq | 0
.../25T8B8B25T/fastq/TGTCGGTTTTTTGCTT.2.fastq | 0
.../fastq/TGTCGGTTTTTTGCTT.barcode_1.fastq | 0
.../fastq/TGTCGGTTTTTTGCTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/TGTTCCGAAACCTCTT.1.fastq | 4 -
.../25T8B8B25T/fastq/TGTTCCGAAACCTCTT.2.fastq | 4 -
.../fastq/TGTTCCGAAACCTCTT.barcode_1.fastq | 4 -
.../fastq/TGTTCCGAAACCTCTT.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/TTAATCAGCTGGTATT.1.fastq | 4 -
.../25T8B8B25T/fastq/TTAATCAGCTGGTATT.2.fastq | 4 -
.../fastq/TTAATCAGCTGGTATT.barcode_1.fastq | 4 -
.../fastq/TTAATCAGCTGGTATT.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/TTATATCTTCATGTCT.1.fastq | 4 -
.../25T8B8B25T/fastq/TTATATCTTCATGTCT.2.fastq | 4 -
.../fastq/TTATATCTTCATGTCT.barcode_1.fastq | 4 -
.../fastq/TTATATCTTCATGTCT.barcode_2.fastq | 4 -
.../25T8B8B25T/fastq/TTCCCCAGTGCTTTTA.1.fastq | 0
.../25T8B8B25T/fastq/TTCCCCAGTGCTTTTA.2.fastq | 0
.../fastq/TTCCCCAGTGCTTTTA.barcode_1.fastq | 0
.../fastq/TTCCCCAGTGCTTTTA.barcode_2.fastq | 0
.../25T8B8B25T/fastq/TTCCTCCTCACCATCC.1.fastq | 0
.../25T8B8B25T/fastq/TTCCTCCTCACCATCC.2.fastq | 0
.../fastq/TTCCTCCTCACCATCC.barcode_1.fastq | 0
.../fastq/TTCCTCCTCACCATCC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/TTCTCATCTTCCTTCC.1.fastq | 0
.../25T8B8B25T/fastq/TTCTCATCTTCCTTCC.2.fastq | 0
.../fastq/TTCTCATCTTCCTTCC.barcode_1.fastq | 0
.../fastq/TTCTCATCTTCCTTCC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/TTGAATAGATATCCGA.1.fastq | 4 -
.../25T8B8B25T/fastq/TTGAATAGATATCCGA.2.fastq | 4 -
.../fastq/TTGAATAGATATCCGA.barcode_1.fastq | 4 -
.../fastq/TTGAATAGATATCCGA.barcode_2.fastq | 4 -
.../picard/illumina/25T8B8B25T/sams/AACTTGAC.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/AAGACACT.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/ACAGGTAT.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/ACAGTTGA.sam | 6 -
.../picard/illumina/25T8B8B25T/sams/ACCAACTG.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/ACCTACTG.sam | 2 -
.../picard/illumina/25T8B8B25T/sams/ACTAAGAC.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/AGGTCGCA.sam | 2 -
.../picard/illumina/25T8B8B25T/sams/AGGTGCGA.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/AGGTTATC.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/AGTTGCTT.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/ATAGCGTC.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/ATTATCAA.sam | 2 -
.../picard/illumina/25T8B8B25T/sams/ATTGTCTG.sam | 2 -
.../picard/illumina/25T8B8B25T/sams/CAATAGTC.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/CAGCAAGG.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/CAGCGGTA.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/CATGCTTA.sam | 6 -
.../picard/illumina/25T8B8B25T/sams/CATGCTTT.sam | 2 -
.../picard/illumina/25T8B8B25T/sams/CATGTTCG.sam | 2 -
.../picard/illumina/25T8B8B25T/sams/CCAGAGCT.sam | 6 -
.../picard/illumina/25T8B8B25T/sams/CCCGATTT.sam | 2 -
.../picard/illumina/25T8B8B25T/sams/CCTATGCC.sam | 4 -
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.../picard/illumina/25T8B8B25T/sams/CGCTATGT.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/CTACCAGG.sam | 4 -
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.../picard/illumina/25T8B8B25T/sams/CTGTAATC.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/GACCAGGA.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/GCCGTCGA.sam | 6 -
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.../picard/illumina/25T8B8B25T/sams/GTATAACA.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/GTCTGATG.sam | 4 -
.../net/sf/picard/illumina/25T8B8B25T/sams/N.sam | 40 -
.../picard/illumina/25T8B8B25T/sams/TACTTAGC.sam | 6 -
.../picard/illumina/25T8B8B25T/sams/TCCCCGTT.sam | 2 -
.../picard/illumina/25T8B8B25T/sams/TCCTTGGT.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/TCGCCTTG.sam | 4 -
.../picard/illumina/25T8B8B25T/sams/TGCAAGTA.sam | 6 -
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.../picard/illumina/readerTests/s_1_1104_pos.txt | 0
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testdata/net/sf/picard/io/5newline5.txt | 2 -
testdata/net/sf/picard/io/empty.txt | 0
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testdata/net/sf/picard/reference/testing.fai | 7 -
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.../Intensities/BaseCalls/L001/C35.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C35.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C35.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C36.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C36.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C36.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C37.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C37.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C37.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C38.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C38.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C38.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C39.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C39.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C39.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C4.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C4.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C4.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C40.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C40.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C40.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C41.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C41.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C41.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C42.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C42.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C42.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C43.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C43.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C43.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C44.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C44.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C44.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C45.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C45.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C45.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C46.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C46.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C46.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C47.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C47.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C47.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C48.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C48.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C48.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C49.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C49.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C49.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C5.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C5.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C5.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C50.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C50.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C50.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C51.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C51.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C51.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C52.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C52.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C52.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C53.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C53.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C53.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C54.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C54.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C54.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C55.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C55.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C55.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C56.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C56.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C56.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C57.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C57.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C57.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C58.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C58.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C58.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C6.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C6.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C6.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C7.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C7.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C7.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C8.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C8.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C8.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/C9.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C9.1/s_1_1201.bcl | Bin
.../Intensities/BaseCalls/L001/C9.1/s_1_2101.bcl | Bin
.../Intensities/BaseCalls/L001/s_1_1101.filter | Bin
.../Intensities/BaseCalls/L001/s_1_1201.filter | Bin
.../Intensities/BaseCalls/L001/s_1_2101.filter | Bin
.../Intensities/BaseCalls/s_1_1101_barcode.txt.gz | Bin
.../Intensities/BaseCalls/s_1_1201_barcode.txt.gz | Bin
.../Intensities/BaseCalls/s_1_2101_barcode.txt.gz | Bin
.../25T8B25T/Data/Intensities/L001/s_1_1101.clocs | Bin
.../25T8B25T/Data/Intensities/L001/s_1_1201.clocs | Bin
.../25T8B25T/Data/Intensities/L001/s_1_2101.clocs | Bin
.../illumina/25T8B25T/fastq/AAAAAAAA.1.fastq | 0
.../illumina/25T8B25T/fastq/AAAAAAAA.2.fastq | 0
.../25T8B25T/fastq/AAAAAAAA.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/AAAAGAAG.1.fastq | 0
.../illumina/25T8B25T/fastq/AAAAGAAG.2.fastq | 0
.../25T8B25T/fastq/AAAAGAAG.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/AACAATGG.1.fastq | 16 +
.../illumina/25T8B25T/fastq/AACAATGG.2.fastq | 16 +
.../25T8B25T/fastq/AACAATGG.barcode_1.fastq | 16 +
.../illumina/25T8B25T/fastq/AACGCATT.1.fastq | 28 +
.../illumina/25T8B25T/fastq/AACGCATT.2.fastq | 28 +
.../25T8B25T/fastq/AACGCATT.barcode_1.fastq | 28 +
.../illumina/25T8B25T/fastq/ACAAAATT.1.fastq | 0
.../illumina/25T8B25T/fastq/ACAAAATT.2.fastq | 0
.../25T8B25T/fastq/ACAAAATT.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/ACAGGTAT.1.fastq | 16 +
.../illumina/25T8B25T/fastq/ACAGGTAT.2.fastq | 16 +
.../25T8B25T/fastq/ACAGGTAT.barcode_1.fastq | 16 +
.../illumina/25T8B25T/fastq/ACAGTTGA.1.fastq | 8 +
.../illumina/25T8B25T/fastq/ACAGTTGA.2.fastq | 8 +
.../25T8B25T/fastq/ACAGTTGA.barcode_1.fastq | 8 +
.../illumina/25T8B25T/fastq/ACCAGTTG.1.fastq | 0
.../illumina/25T8B25T/fastq/ACCAGTTG.2.fastq | 0
.../25T8B25T/fastq/ACCAGTTG.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/ACGAAATC.1.fastq | 0
.../illumina/25T8B25T/fastq/ACGAAATC.2.fastq | 0
.../25T8B25T/fastq/ACGAAATC.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/ACTAAGAC.1.fastq | 16 +
.../illumina/25T8B25T/fastq/ACTAAGAC.2.fastq | 16 +
.../25T8B25T/fastq/ACTAAGAC.barcode_1.fastq | 16 +
.../illumina/25T8B25T/fastq/ACTGTACC.1.fastq | 0
.../illumina/25T8B25T/fastq/ACTGTACC.2.fastq | 0
.../25T8B25T/fastq/ACTGTACC.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/ACTGTATC.1.fastq | 16 +
.../illumina/25T8B25T/fastq/ACTGTATC.2.fastq | 16 +
.../25T8B25T/fastq/ACTGTATC.barcode_1.fastq | 16 +
.../illumina/25T8B25T/fastq/AGAAAAGA.1.fastq | 0
.../illumina/25T8B25T/fastq/AGAAAAGA.2.fastq | 0
.../25T8B25T/fastq/AGAAAAGA.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/AGCATGGA.1.fastq | 12 +
.../illumina/25T8B25T/fastq/AGCATGGA.2.fastq | 12 +
.../25T8B25T/fastq/AGCATGGA.barcode_1.fastq | 12 +
.../illumina/25T8B25T/fastq/AGGTAAGG.1.fastq | 16 +
.../illumina/25T8B25T/fastq/AGGTAAGG.2.fastq | 16 +
.../25T8B25T/fastq/AGGTAAGG.barcode_1.fastq | 16 +
.../illumina/25T8B25T/fastq/AGGTCGCA.1.fastq | 16 +
.../illumina/25T8B25T/fastq/AGGTCGCA.2.fastq | 16 +
.../25T8B25T/fastq/AGGTCGCA.barcode_1.fastq | 16 +
.../illumina/25T8B25T/fastq/ATTATCAA.1.fastq | 20 +
.../illumina/25T8B25T/fastq/ATTATCAA.2.fastq | 20 +
.../25T8B25T/fastq/ATTATCAA.barcode_1.fastq | 20 +
.../illumina/25T8B25T/fastq/ATTCCTCT.1.fastq | 16 +
.../illumina/25T8B25T/fastq/ATTCCTCT.2.fastq | 16 +
.../25T8B25T/fastq/ATTCCTCT.barcode_1.fastq | 16 +
.../illumina/25T8B25T/fastq/CAACTCTC.1.fastq | 20 +
.../illumina/25T8B25T/fastq/CAACTCTC.2.fastq | 20 +
.../25T8B25T/fastq/CAACTCTC.barcode_1.fastq | 20 +
.../illumina/25T8B25T/fastq/CAATAGAC.1.fastq | 0
.../illumina/25T8B25T/fastq/CAATAGAC.2.fastq | 0
.../25T8B25T/fastq/CAATAGAC.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/CAATAGTC.1.fastq | 28 +
.../illumina/25T8B25T/fastq/CAATAGTC.2.fastq | 28 +
.../25T8B25T/fastq/CAATAGTC.barcode_1.fastq | 28 +
.../illumina/25T8B25T/fastq/CAGCGGAT.1.fastq | 0
.../illumina/25T8B25T/fastq/CAGCGGAT.2.fastq | 0
.../25T8B25T/fastq/CAGCGGAT.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/CAGCGGTA.1.fastq | 20 +
.../illumina/25T8B25T/fastq/CAGCGGTA.2.fastq | 20 +
.../25T8B25T/fastq/CAGCGGTA.barcode_1.fastq | 20 +
.../illumina/25T8B25T/fastq/CCAACATT.1.fastq | 28 +
.../illumina/25T8B25T/fastq/CCAACATT.2.fastq | 28 +
.../25T8B25T/fastq/CCAACATT.barcode_1.fastq | 28 +
.../illumina/25T8B25T/fastq/CCAGCACC.1.fastq | 12 +
.../illumina/25T8B25T/fastq/CCAGCACC.2.fastq | 12 +
.../25T8B25T/fastq/CCAGCACC.barcode_1.fastq | 12 +
.../illumina/25T8B25T/fastq/CCATGCGT.1.fastq | 0
.../illumina/25T8B25T/fastq/CCATGCGT.2.fastq | 0
.../25T8B25T/fastq/CCATGCGT.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/CGCCTTCC.1.fastq | 8 +
.../illumina/25T8B25T/fastq/CGCCTTCC.2.fastq | 8 +
.../25T8B25T/fastq/CGCCTTCC.barcode_1.fastq | 8 +
.../illumina/25T8B25T/fastq/CGCTATGT.1.fastq | 20 +
.../illumina/25T8B25T/fastq/CGCTATGT.2.fastq | 20 +
.../25T8B25T/fastq/CGCTATGT.barcode_1.fastq | 20 +
.../illumina/25T8B25T/fastq/CTAACTCG.1.fastq | 16 +
.../illumina/25T8B25T/fastq/CTAACTCG.2.fastq | 16 +
.../25T8B25T/fastq/CTAACTCG.barcode_1.fastq | 16 +
.../illumina/25T8B25T/fastq/CTATGCGC.1.fastq | 0
.../illumina/25T8B25T/fastq/CTATGCGC.2.fastq | 0
.../25T8B25T/fastq/CTATGCGC.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/CTATGCGT.1.fastq | 28 +
.../illumina/25T8B25T/fastq/CTATGCGT.2.fastq | 28 +
.../25T8B25T/fastq/CTATGCGT.barcode_1.fastq | 28 +
.../illumina/25T8B25T/fastq/CTGCGGAT.1.fastq | 12 +
.../illumina/25T8B25T/fastq/CTGCGGAT.2.fastq | 12 +
.../25T8B25T/fastq/CTGCGGAT.barcode_1.fastq | 12 +
.../illumina/25T8B25T/fastq/CTGTAATC.1.fastq | 24 +
.../illumina/25T8B25T/fastq/CTGTAATC.2.fastq | 24 +
.../25T8B25T/fastq/CTGTAATC.barcode_1.fastq | 24 +
.../illumina/25T8B25T/fastq/GAAAAAAA.1.fastq | 0
.../illumina/25T8B25T/fastq/GAAAAAAA.2.fastq | 0
.../25T8B25T/fastq/GAAAAAAA.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/GAACGAT..1.fastq | 0
.../illumina/25T8B25T/fastq/GAACGAT..2.fastq | 0
.../25T8B25T/fastq/GAACGAT..barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/GAAGGAAG.1.fastq | 12 +
.../illumina/25T8B25T/fastq/GAAGGAAG.2.fastq | 12 +
.../25T8B25T/fastq/GAAGGAAG.barcode_1.fastq | 12 +
.../illumina/25T8B25T/fastq/GACCAGGA.1.fastq | 28 +
.../illumina/25T8B25T/fastq/GACCAGGA.2.fastq | 28 +
.../25T8B25T/fastq/GACCAGGA.barcode_1.fastq | 28 +
.../illumina/25T8B25T/fastq/GACCAGGC.1.fastq | 0
.../illumina/25T8B25T/fastq/GACCAGGC.2.fastq | 0
.../25T8B25T/fastq/GACCAGGC.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/GACCGTTG.1.fastq | 16 +
.../illumina/25T8B25T/fastq/GACCGTTG.2.fastq | 16 +
.../25T8B25T/fastq/GACCGTTG.barcode_1.fastq | 16 +
.../illumina/25T8B25T/fastq/GACCTAAC.1.fastq | 4 +
.../illumina/25T8B25T/fastq/GACCTAAC.2.fastq | 4 +
.../25T8B25T/fastq/GACCTAAC.barcode_1.fastq | 4 +
.../illumina/25T8B25T/fastq/GATATCCA.1.fastq | 12 +
.../illumina/25T8B25T/fastq/GATATCCA.2.fastq | 12 +
.../25T8B25T/fastq/GATATCCA.barcode_1.fastq | 12 +
.../illumina/25T8B25T/fastq/GCCGTCGA.1.fastq | 20 +
.../illumina/25T8B25T/fastq/GCCGTCGA.2.fastq | 20 +
.../25T8B25T/fastq/GCCGTCGA.barcode_1.fastq | 20 +
.../illumina/25T8B25T/fastq/GCCTAGCC.1.fastq | 20 +
.../illumina/25T8B25T/fastq/GCCTAGCC.2.fastq | 20 +
.../25T8B25T/fastq/GCCTAGCC.barcode_1.fastq | 20 +
.../illumina/25T8B25T/fastq/GTAACATC.1.fastq | 8 +
.../illumina/25T8B25T/fastq/GTAACATC.2.fastq | 8 +
.../25T8B25T/fastq/GTAACATC.barcode_1.fastq | 8 +
.../illumina/25T8B25T/fastq/GTCCACAG.1.fastq | 8 +
.../illumina/25T8B25T/fastq/GTCCACAG.2.fastq | 8 +
.../25T8B25T/fastq/GTCCACAG.barcode_1.fastq | 8 +
testdata/picard/illumina/25T8B25T/fastq/N.1.fastq | 64 +
testdata/picard/illumina/25T8B25T/fastq/N.2.fastq | 64 +
.../illumina/25T8B25T/fastq/N.barcode_1.fastq | 64 +
.../illumina/25T8B25T/fastq/TAAGCACA.1.fastq | 8 +
.../illumina/25T8B25T/fastq/TAAGCACA.2.fastq | 8 +
.../25T8B25T/fastq/TAAGCACA.barcode_1.fastq | 8 +
.../illumina/25T8B25T/fastq/TACCGTCT.1.fastq | 0
.../illumina/25T8B25T/fastq/TACCGTCT.2.fastq | 0
.../25T8B25T/fastq/TACCGTCT.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/TAGCGGTA.1.fastq | 0
.../illumina/25T8B25T/fastq/TAGCGGTA.2.fastq | 0
.../25T8B25T/fastq/TAGCGGTA.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/TATCAGCC.1.fastq | 0
.../illumina/25T8B25T/fastq/TATCAGCC.2.fastq | 0
.../25T8B25T/fastq/TATCAGCC.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/TATCCAGG.1.fastq | 16 +
.../illumina/25T8B25T/fastq/TATCCAGG.2.fastq | 16 +
.../25T8B25T/fastq/TATCCAGG.barcode_1.fastq | 16 +
.../illumina/25T8B25T/fastq/TATCCATG.1.fastq | 0
.../illumina/25T8B25T/fastq/TATCCATG.2.fastq | 0
.../25T8B25T/fastq/TATCCATG.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/TATCTCGG.1.fastq | 0
.../illumina/25T8B25T/fastq/TATCTCGG.2.fastq | 0
.../25T8B25T/fastq/TATCTCGG.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/TATCTGCC.1.fastq | 28 +
.../illumina/25T8B25T/fastq/TATCTGCC.2.fastq | 28 +
.../25T8B25T/fastq/TATCTGCC.barcode_1.fastq | 28 +
.../illumina/25T8B25T/fastq/TCCGTCTA.1.fastq | 0
.../illumina/25T8B25T/fastq/TCCGTCTA.2.fastq | 0
.../25T8B25T/fastq/TCCGTCTA.barcode_1.fastq | 0
.../illumina/25T8B25T/fastq/TCGCTAGA.1.fastq | 20 +
.../illumina/25T8B25T/fastq/TCGCTAGA.2.fastq | 20 +
.../25T8B25T/fastq/TCGCTAGA.barcode_1.fastq | 20 +
.../illumina/25T8B25T/fastq/TCTGCAAG.1.fastq | 4 +
.../illumina/25T8B25T/fastq/TCTGCAAG.2.fastq | 4 +
.../25T8B25T/fastq/TCTGCAAG.barcode_1.fastq | 4 +
.../illumina/25T8B25T/fastq/TGCAAGTA.1.fastq | 8 +
.../illumina/25T8B25T/fastq/TGCAAGTA.2.fastq | 8 +
.../25T8B25T/fastq/TGCAAGTA.barcode_1.fastq | 8 +
.../illumina/25T8B25T/fastq/TGCTGCTG.1.fastq | 16 +
.../illumina/25T8B25T/fastq/TGCTGCTG.2.fastq | 16 +
.../25T8B25T/fastq/TGCTGCTG.barcode_1.fastq | 16 +
.../illumina/25T8B25T/fastq/TGTAACTC.1.fastq | 4 +
.../illumina/25T8B25T/fastq/TGTAACTC.2.fastq | 4 +
.../25T8B25T/fastq/TGTAACTC.barcode_1.fastq | 4 +
.../illumina/25T8B25T/fastq/TGTAATCA.1.fastq | 12 +
.../illumina/25T8B25T/fastq/TGTAATCA.2.fastq | 12 +
.../25T8B25T/fastq/TGTAATCA.barcode_1.fastq | 12 +
.../illumina/25T8B25T/fastq/TTGTCTAT.1.fastq | 16 +
.../illumina/25T8B25T/fastq/TTGTCTAT.2.fastq | 16 +
.../25T8B25T/fastq/TTGTCTAT.barcode_1.fastq | 16 +
.../picard/illumina/25T8B25T/fastq/barcode.params | 0
.../illumina/25T8B25T/fastq/mp_barcode.params | 0
.../illumina/25T8B25T/fastq/nonBarcoded.1.fastq | 720 +
.../illumina/25T8B25T/fastq/nonBarcoded.2.fastq | 720 +
.../illumina/25T8B25T/fastq/testMultiplex.1.fastq | 0
.../25T8B25T/fastq/testMultiplex.barcode_1.fastq | 0
.../25T8B25T/fastq/testMultiplexRH.1.fastq | 0
.../25T8B25T/fastq/testMultiplexRH.2.fastq | 0
.../25T8B25T/fastq/testMultiplexRH.barcode_1.fastq | 0
.../picard/illumina/25T8B25T/sams/AAAAAAAA.sam | 2 +
.../picard/illumina/25T8B25T/sams/AAAAGAAG.sam | 2 +
.../picard/illumina/25T8B25T/sams/AACAATGG.sam | 10 +
.../picard/illumina/25T8B25T/sams/AACGCATT.sam | 16 +
.../picard/illumina/25T8B25T/sams/ACAAAATT.sam | 2 +
.../picard/illumina/25T8B25T/sams/ACAGGTAT.sam | 10 +
.../picard/illumina/25T8B25T/sams/ACAGTTGA.sam | 6 +
.../picard/illumina/25T8B25T/sams/ACCAGTTG.sam | 2 +
.../picard/illumina/25T8B25T/sams/ACGAAATC.sam | 2 +
.../picard/illumina/25T8B25T/sams/ACTAAGAC.sam | 10 +
.../picard/illumina/25T8B25T/sams/ACTGTACC.sam | 2 +
.../picard/illumina/25T8B25T/sams/ACTGTATC.sam | 10 +
.../picard/illumina/25T8B25T/sams/AGAAAAGA.sam | 2 +
.../picard/illumina/25T8B25T/sams/AGCATGGA.sam | 8 +
.../picard/illumina/25T8B25T/sams/AGGTAAGG.sam | 10 +
.../picard/illumina/25T8B25T/sams/AGGTCGCA.sam | 10 +
.../picard/illumina/25T8B25T/sams/ATTATCAA.sam | 12 +
.../picard/illumina/25T8B25T/sams/ATTCCTCT.sam | 10 +
.../picard/illumina/25T8B25T/sams/CAACTCTC.sam | 12 +
.../picard/illumina/25T8B25T/sams/CAATAGAC.sam | 2 +
.../picard/illumina/25T8B25T/sams/CAATAGTC.sam | 16 +
.../picard/illumina/25T8B25T/sams/CAGCGGAT.sam | 2 +
.../picard/illumina/25T8B25T/sams/CAGCGGTA.sam | 12 +
.../picard/illumina/25T8B25T/sams/CCAACATT.sam | 16 +
.../picard/illumina/25T8B25T/sams/CCAGCACC.sam | 8 +
.../picard/illumina/25T8B25T/sams/CCATGCGT.sam | 2 +
.../picard/illumina/25T8B25T/sams/CGCCTTCC.sam | 6 +
.../picard/illumina/25T8B25T/sams/CGCTATGT.sam | 12 +
.../picard/illumina/25T8B25T/sams/CTAACTCG.sam | 10 +
.../picard/illumina/25T8B25T/sams/CTATGCGC.sam | 2 +
.../picard/illumina/25T8B25T/sams/CTATGCGT.sam | 16 +
.../picard/illumina/25T8B25T/sams/CTGCGGAT.sam | 8 +
.../picard/illumina/25T8B25T/sams/CTGTAATC.sam | 14 +
.../picard/illumina/25T8B25T/sams/GAAAAAAA.sam | 2 +
.../picard/illumina/25T8B25T/sams/GAACGAT..sam | 2 +
.../picard/illumina/25T8B25T/sams/GAAGGAAG.sam | 8 +
.../picard/illumina/25T8B25T/sams/GACCAGGA.sam | 16 +
.../picard/illumina/25T8B25T/sams/GACCAGGC.sam | 2 +
.../picard/illumina/25T8B25T/sams/GACCGTTG.sam | 10 +
.../picard/illumina/25T8B25T/sams/GACCTAAC.sam | 4 +
.../picard/illumina/25T8B25T/sams/GATATCCA.sam | 8 +
.../picard/illumina/25T8B25T/sams/GCCGTCGA.sam | 12 +
.../picard/illumina/25T8B25T/sams/GCCTAGCC.sam | 12 +
.../picard/illumina/25T8B25T/sams/GTAACATC.sam | 6 +
.../picard/illumina/25T8B25T/sams/GTCCACAG.sam | 6 +
testdata/picard/illumina/25T8B25T/sams/N.sam | 34 +
.../picard/illumina/25T8B25T/sams/TAAGCACA.sam | 6 +
.../picard/illumina/25T8B25T/sams/TACCGTCT.sam | 2 +
.../picard/illumina/25T8B25T/sams/TAGCGGTA.sam | 2 +
.../picard/illumina/25T8B25T/sams/TATCAGCC.sam | 2 +
.../picard/illumina/25T8B25T/sams/TATCCAGG.sam | 10 +
.../picard/illumina/25T8B25T/sams/TATCCATG.sam | 2 +
.../picard/illumina/25T8B25T/sams/TATCTCGG.sam | 2 +
.../picard/illumina/25T8B25T/sams/TATCTGCC.sam | 16 +
.../picard/illumina/25T8B25T/sams/TCCGTCTA.sam | 2 +
.../picard/illumina/25T8B25T/sams/TCGCTAGA.sam | 12 +
.../picard/illumina/25T8B25T/sams/TCTGCAAG.sam | 4 +
.../picard/illumina/25T8B25T/sams/TGCAAGTA.sam | 6 +
.../picard/illumina/25T8B25T/sams/TGCTGCTG.sam | 10 +
.../picard/illumina/25T8B25T/sams/TGTAACTC.sam | 4 +
.../picard/illumina/25T8B25T/sams/TGTAATCA.sam | 8 +
.../picard/illumina/25T8B25T/sams/TTGTCTAT.sam | 10 +
.../picard/illumina/25T8B25T/sams/barcode.params | 0
.../sams/multiplexed_positive_rgtags.params | 0
.../picard/illumina/25T8B25T/sams/nonBarcoded.sam | 182 +
.../Intensities/BaseCalls/L001/C1.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C10.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C11.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C12.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C13.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C14.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C15.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C16.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C17.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C18.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C19.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C2.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C20.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C21.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C22.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C23.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C24.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C25.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C26.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C27.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C28.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C29.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C3.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C30.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C31.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C32.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C33.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C34.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C35.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C36.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C37.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C38.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C39.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C4.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C40.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C41.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C42.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C43.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C44.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C45.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C46.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C47.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C48.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C49.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C5.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C50.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C51.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C52.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C53.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C54.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C55.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C56.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C57.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C58.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C59.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C6.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C60.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C61.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C62.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C63.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C64.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C65.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C66.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C7.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C8.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C9.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/s_1_1101.filter | Bin
.../Intensities/BaseCalls/s_1_1101_barcode.txt | 0
.../25T8B8B25T/Data/Intensities/L001/s_1_1101.locs | Bin
.../25T8B8B25T/fastq/AACTTGACGCTCTCTT.1.fastq | 4 +
.../25T8B8B25T/fastq/AACTTGACGCTCTCTT.2.fastq | 4 +
.../fastq/AACTTGACGCTCTCTT.barcode_1.fastq | 4 +
.../fastq/AACTTGACGCTCTCTT.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/AAGACACTAGTCACCT.1.fastq | 4 +
.../25T8B8B25T/fastq/AAGACACTAGTCACCT.2.fastq | 4 +
.../fastq/AAGACACTAGTCACCT.barcode_1.fastq | 4 +
.../fastq/AAGACACTAGTCACCT.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/AAGACACTAGTCTCCT.1.fastq | 0
.../25T8B8B25T/fastq/AAGACACTAGTCTCCT.2.fastq | 0
.../fastq/AAGACACTAGTCTCCT.barcode_1.fastq | 0
.../fastq/AAGACACTAGTCTCCT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/ACAGGTATCACTTCAT.1.fastq | 4 +
.../25T8B8B25T/fastq/ACAGGTATCACTTCAT.2.fastq | 4 +
.../fastq/ACAGGTATCACTTCAT.barcode_1.fastq | 4 +
.../fastq/ACAGGTATCACTTCAT.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/ACAGTTGAATCTTCTC.1.fastq | 8 +
.../25T8B8B25T/fastq/ACAGTTGAATCTTCTC.2.fastq | 8 +
.../fastq/ACAGTTGAATCTTCTC.barcode_1.fastq | 8 +
.../fastq/ACAGTTGAATCTTCTC.barcode_2.fastq | 8 +
.../25T8B8B25T/fastq/ACCAACTGCATCACTT.1.fastq | 4 +
.../25T8B8B25T/fastq/ACCAACTGCATCACTT.2.fastq | 4 +
.../fastq/ACCAACTGCATCACTT.barcode_1.fastq | 4 +
.../fastq/ACCAACTGCATCACTT.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/ACCTACTGCTTCCCTT.1.fastq | 0
.../25T8B8B25T/fastq/ACCTACTGCTTCCCTT.2.fastq | 0
.../fastq/ACCTACTGCTTCCCTT.barcode_1.fastq | 0
.../fastq/ACCTACTGCTTCCCTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/ACTAAGACGTCCTCAT.1.fastq | 4 +
.../25T8B8B25T/fastq/ACTAAGACGTCCTCAT.2.fastq | 4 +
.../fastq/ACTAAGACGTCCTCAT.barcode_1.fastq | 4 +
.../fastq/ACTAAGACGTCCTCAT.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/AGGTCGCATTCCTTTC.1.fastq | 0
.../25T8B8B25T/fastq/AGGTCGCATTCCTTTC.2.fastq | 0
.../fastq/AGGTCGCATTCCTTTC.barcode_1.fastq | 0
.../fastq/AGGTCGCATTCCTTTC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/AGGTGCGAGACATTAA.1.fastq | 4 +
.../25T8B8B25T/fastq/AGGTGCGAGACATTAA.2.fastq | 4 +
.../fastq/AGGTGCGAGACATTAA.barcode_1.fastq | 4 +
.../fastq/AGGTGCGAGACATTAA.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/AGGTTATCTTAGCCAG.1.fastq | 4 +
.../25T8B8B25T/fastq/AGGTTATCTTAGCCAG.2.fastq | 4 +
.../fastq/AGGTTATCTTAGCCAG.barcode_1.fastq | 4 +
.../fastq/AGGTTATCTTAGCCAG.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/AGTTGCTTTGACTTGG.1.fastq | 4 +
.../25T8B8B25T/fastq/AGTTGCTTTGACTTGG.2.fastq | 4 +
.../fastq/AGTTGCTTTGACTTGG.barcode_1.fastq | 4 +
.../fastq/AGTTGCTTTGACTTGG.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/ATAGCGTCTTGGTCTG.1.fastq | 4 +
.../25T8B8B25T/fastq/ATAGCGTCTTGGTCTG.2.fastq | 4 +
.../fastq/ATAGCGTCTTGGTCTG.barcode_1.fastq | 4 +
.../fastq/ATAGCGTCTTGGTCTG.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/ATTATCAACACCATAC.1.fastq | 0
.../25T8B8B25T/fastq/ATTATCAACACCATAC.2.fastq | 0
.../fastq/ATTATCAACACCATAC.barcode_1.fastq | 0
.../fastq/ATTATCAACACCATAC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/ATTGTCTGGATTCACA.1.fastq | 0
.../25T8B8B25T/fastq/ATTGTCTGGATTCACA.2.fastq | 0
.../fastq/ATTGTCTGGATTCACA.barcode_1.fastq | 0
.../fastq/ATTGTCTGGATTCACA.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CAATAGTCCGACTCTC.1.fastq | 4 +
.../25T8B8B25T/fastq/CAATAGTCCGACTCTC.2.fastq | 4 +
.../fastq/CAATAGTCCGACTCTC.barcode_1.fastq | 4 +
.../fastq/CAATAGTCCGACTCTC.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/CAGCAAGGGCGATATT.1.fastq | 4 +
.../25T8B8B25T/fastq/CAGCAAGGGCGATATT.2.fastq | 4 +
.../fastq/CAGCAAGGGCGATATT.barcode_1.fastq | 4 +
.../fastq/CAGCAAGGGCGATATT.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/CAGCGGTAAGTACTGC.1.fastq | 4 +
.../25T8B8B25T/fastq/CAGCGGTAAGTACTGC.2.fastq | 4 +
.../fastq/CAGCGGTAAGTACTGC.barcode_1.fastq | 4 +
.../fastq/CAGCGGTAAGTACTGC.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/CAGCGGTATGTACTGC.1.fastq | 0
.../25T8B8B25T/fastq/CAGCGGTATGTACTGC.2.fastq | 0
.../fastq/CAGCGGTATGTACTGC.barcode_1.fastq | 0
.../fastq/CAGCGGTATGTACTGC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CATGCTTATAGCATTG.1.fastq | 8 +
.../25T8B8B25T/fastq/CATGCTTATAGCATTG.2.fastq | 8 +
.../fastq/CATGCTTATAGCATTG.barcode_1.fastq | 8 +
.../fastq/CATGCTTATAGCATTG.barcode_2.fastq | 8 +
.../25T8B8B25T/fastq/CATGCTTATAGCATTT.1.fastq | 0
.../25T8B8B25T/fastq/CATGCTTATAGCATTT.2.fastq | 0
.../fastq/CATGCTTATAGCATTT.barcode_1.fastq | 0
.../fastq/CATGCTTATAGCATTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CATGCTTTTAGCATTG.1.fastq | 0
.../25T8B8B25T/fastq/CATGCTTTTAGCATTG.2.fastq | 0
.../fastq/CATGCTTTTAGCATTG.barcode_1.fastq | 0
.../fastq/CATGCTTTTAGCATTG.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CATGTTCGCGCCTTTT.1.fastq | 0
.../25T8B8B25T/fastq/CATGTTCGCGCCTTTT.2.fastq | 0
.../fastq/CATGTTCGCGCCTTTT.barcode_1.fastq | 0
.../fastq/CATGTTCGCGCCTTTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CCAGAGCTCAACTGAT.1.fastq | 8 +
.../25T8B8B25T/fastq/CCAGAGCTCAACTGAT.2.fastq | 8 +
.../fastq/CCAGAGCTCAACTGAT.barcode_1.fastq | 8 +
.../fastq/CCAGAGCTCAACTGAT.barcode_2.fastq | 8 +
.../25T8B8B25T/fastq/CCCGATTTTCTCTCCC.1.fastq | 0
.../25T8B8B25T/fastq/CCCGATTTTCTCTCCC.2.fastq | 0
.../fastq/CCCGATTTTCTCTCCC.barcode_1.fastq | 0
.../fastq/CCCGATTTTCTCTCCC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CCTATGCCAATTGGCC.1.fastq | 4 +
.../25T8B8B25T/fastq/CCTATGCCAATTGGCC.2.fastq | 4 +
.../fastq/CCTATGCCAATTGGCC.barcode_1.fastq | 4 +
.../fastq/CCTATGCCAATTGGCC.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/CCTATTCTTCGTTTTC.1.fastq | 0
.../25T8B8B25T/fastq/CCTATTCTTCGTTTTC.2.fastq | 0
.../fastq/CCTATTCTTCGTTTTC.barcode_1.fastq | 0
.../fastq/CCTATTCTTCGTTTTC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CCTCTTCTCTCGCTTT.1.fastq | 0
.../25T8B8B25T/fastq/CCTCTTCTCTCGCTTT.2.fastq | 0
.../fastq/CCTCTTCTCTCGCTTT.barcode_1.fastq | 0
.../fastq/CCTCTTCTCTCGCTTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CCTCTTTCTTCTGCTC.1.fastq | 0
.../25T8B8B25T/fastq/CCTCTTTCTTCTGCTC.2.fastq | 0
.../fastq/CCTCTTTCTTCTGCTC.barcode_1.fastq | 0
.../fastq/CCTCTTTCTTCTGCTC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CCTTCGCAGAATCGAC.1.fastq | 4 +
.../25T8B8B25T/fastq/CCTTCGCAGAATCGAC.2.fastq | 4 +
.../fastq/CCTTCGCAGAATCGAC.barcode_1.fastq | 4 +
.../fastq/CCTTCGCAGAATCGAC.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/CCTTCTTTTATCATTT.1.fastq | 0
.../25T8B8B25T/fastq/CCTTCTTTTATCATTT.2.fastq | 0
.../fastq/CCTTCTTTTATCATTT.barcode_1.fastq | 0
.../fastq/CCTTCTTTTATCATTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CGCTATGTTTCACCTT.1.fastq | 4 +
.../25T8B8B25T/fastq/CGCTATGTTTCACCTT.2.fastq | 4 +
.../fastq/CGCTATGTTTCACCTT.barcode_1.fastq | 4 +
.../fastq/CGCTATGTTTCACCTT.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/CGCTATGTTTCTCCTT.1.fastq | 0
.../25T8B8B25T/fastq/CGCTATGTTTCTCCTT.2.fastq | 0
.../fastq/CGCTATGTTTCTCCTT.barcode_1.fastq | 0
.../fastq/CGCTATGTTTCTCCTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CTACCAGGTTCTTGGC.1.fastq | 4 +
.../25T8B8B25T/fastq/CTACCAGGTTCTTGGC.2.fastq | 4 +
.../fastq/CTACCAGGTTCTTGGC.barcode_1.fastq | 4 +
.../fastq/CTACCAGGTTCTTGGC.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/CTCCCTCTTCCTTCTT.1.fastq | 0
.../25T8B8B25T/fastq/CTCCCTCTTCCTTCTT.2.fastq | 0
.../fastq/CTCCCTCTTCCTTCTT.barcode_1.fastq | 0
.../fastq/CTCCCTCTTCCTTCTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/CTGTAATCCTATTAGC.1.fastq | 4 +
.../25T8B8B25T/fastq/CTGTAATCCTATTAGC.2.fastq | 4 +
.../fastq/CTGTAATCCTATTAGC.barcode_1.fastq | 4 +
.../fastq/CTGTAATCCTATTAGC.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/GACCAGGACCATCACA.1.fastq | 4 +
.../25T8B8B25T/fastq/GACCAGGACCATCACA.2.fastq | 4 +
.../fastq/GACCAGGACCATCACA.barcode_1.fastq | 4 +
.../fastq/GACCAGGACCATCACA.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/GCCGTCGAAGGTACCA.1.fastq | 8 +
.../25T8B8B25T/fastq/GCCGTCGAAGGTACCA.2.fastq | 8 +
.../fastq/GCCGTCGAAGGTACCA.barcode_1.fastq | 8 +
.../fastq/GCCGTCGAAGGTACCA.barcode_2.fastq | 8 +
.../25T8B8B25T/fastq/GCCGTCGAAGGTACCC.1.fastq | 0
.../25T8B8B25T/fastq/GCCGTCGAAGGTACCC.2.fastq | 0
.../fastq/GCCGTCGAAGGTACCC.barcode_1.fastq | 0
.../fastq/GCCGTCGAAGGTACCC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/GCCGTCGATGGTACCC.1.fastq | 0
.../25T8B8B25T/fastq/GCCGTCGATGGTACCC.2.fastq | 0
.../fastq/GCCGTCGATGGTACCC.barcode_1.fastq | 0
.../fastq/GCCGTCGATGGTACCC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/GCCTAGCCCTTGAATC.1.fastq | 4 +
.../25T8B8B25T/fastq/GCCTAGCCCTTGAATC.2.fastq | 4 +
.../fastq/GCCTAGCCCTTGAATC.barcode_1.fastq | 4 +
.../fastq/GCCTAGCCCTTGAATC.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/GCTATCCACCTCCCCC.1.fastq | 0
.../25T8B8B25T/fastq/GCTATCCACCTCCCCC.2.fastq | 0
.../fastq/GCTATCCACCTCCCCC.barcode_1.fastq | 0
.../fastq/GCTATCCACCTCCCCC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/GTATAACAAATTCAAC.1.fastq | 4 +
.../25T8B8B25T/fastq/GTATAACAAATTCAAC.2.fastq | 4 +
.../fastq/GTATAACAAATTCAAC.barcode_1.fastq | 4 +
.../fastq/GTATAACAAATTCAAC.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/GTATAACATATTCAAC.1.fastq | 0
.../25T8B8B25T/fastq/GTATAACATATTCAAC.2.fastq | 0
.../fastq/GTATAACATATTCAAC.barcode_1.fastq | 0
.../fastq/GTATAACATATTCAAC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/GTCTGATGGAACTTCG.1.fastq | 4 +
.../25T8B8B25T/fastq/GTCTGATGGAACTTCG.2.fastq | 4 +
.../fastq/GTCTGATGGAACTTCG.barcode_1.fastq | 4 +
.../fastq/GTCTGATGGAACTTCG.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/GTCTGATGTCACTTCC.1.fastq | 0
.../25T8B8B25T/fastq/GTCTGATGTCACTTCC.2.fastq | 0
.../fastq/GTCTGATGTCACTTCC.barcode_1.fastq | 0
.../fastq/GTCTGATGTCACTTCC.barcode_2.fastq | 0
.../picard/illumina/25T8B8B25T/fastq/NN.1.fastq | 76 +
.../picard/illumina/25T8B8B25T/fastq/NN.2.fastq | 76 +
.../illumina/25T8B8B25T/fastq/NN.barcode_1.fastq | 76 +
.../illumina/25T8B8B25T/fastq/NN.barcode_2.fastq | 76 +
.../25T8B8B25T/fastq/TACTTAGCGTCTGCAC.1.fastq | 8 +
.../25T8B8B25T/fastq/TACTTAGCGTCTGCAC.2.fastq | 8 +
.../fastq/TACTTAGCGTCTGCAC.barcode_1.fastq | 8 +
.../fastq/TACTTAGCGTCTGCAC.barcode_2.fastq | 8 +
.../25T8B8B25T/fastq/TCCCCGTTCCAACTTC.1.fastq | 0
.../25T8B8B25T/fastq/TCCCCGTTCCAACTTC.2.fastq | 0
.../fastq/TCCCCGTTCCAACTTC.barcode_1.fastq | 0
.../fastq/TCCCCGTTCCAACTTC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/TCCTTGGTGCTGCACT.1.fastq | 4 +
.../25T8B8B25T/fastq/TCCTTGGTGCTGCACT.2.fastq | 4 +
.../fastq/TCCTTGGTGCTGCACT.barcode_1.fastq | 4 +
.../fastq/TCCTTGGTGCTGCACT.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/TCGCCTTGCCAACGCT.1.fastq | 4 +
.../25T8B8B25T/fastq/TCGCCTTGCCAACGCT.2.fastq | 4 +
.../fastq/TCGCCTTGCCAACGCT.barcode_1.fastq | 4 +
.../fastq/TCGCCTTGCCAACGCT.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/TGCAAGTACGAACTTC.1.fastq | 8 +
.../25T8B8B25T/fastq/TGCAAGTACGAACTTC.2.fastq | 8 +
.../fastq/TGCAAGTACGAACTTC.barcode_1.fastq | 8 +
.../fastq/TGCAAGTACGAACTTC.barcode_2.fastq | 8 +
.../25T8B8B25T/fastq/TGCTCGACTTCACAGA.1.fastq | 4 +
.../25T8B8B25T/fastq/TGCTCGACTTCACAGA.2.fastq | 4 +
.../fastq/TGCTCGACTTCACAGA.barcode_1.fastq | 4 +
.../fastq/TGCTCGACTTCACAGA.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/TGCTCGACTTCACAGT.1.fastq | 0
.../25T8B8B25T/fastq/TGCTCGACTTCACAGT.2.fastq | 0
.../fastq/TGCTCGACTTCACAGT.barcode_1.fastq | 0
.../fastq/TGCTCGACTTCACAGT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/TGTAATCACCTCTAAC.1.fastq | 4 +
.../25T8B8B25T/fastq/TGTAATCACCTCTAAC.2.fastq | 4 +
.../fastq/TGTAATCACCTCTAAC.barcode_1.fastq | 4 +
.../fastq/TGTAATCACCTCTAAC.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/TGTATCTCTTACTCTT.1.fastq | 0
.../25T8B8B25T/fastq/TGTATCTCTTACTCTT.2.fastq | 0
.../fastq/TGTATCTCTTACTCTT.barcode_1.fastq | 0
.../fastq/TGTATCTCTTACTCTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/TGTCGGTTTTTTGCTT.1.fastq | 0
.../25T8B8B25T/fastq/TGTCGGTTTTTTGCTT.2.fastq | 0
.../fastq/TGTCGGTTTTTTGCTT.barcode_1.fastq | 0
.../fastq/TGTCGGTTTTTTGCTT.barcode_2.fastq | 0
.../25T8B8B25T/fastq/TGTTCCGAAACCTCTT.1.fastq | 4 +
.../25T8B8B25T/fastq/TGTTCCGAAACCTCTT.2.fastq | 4 +
.../fastq/TGTTCCGAAACCTCTT.barcode_1.fastq | 4 +
.../fastq/TGTTCCGAAACCTCTT.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/TTAATCAGCTGGTATT.1.fastq | 4 +
.../25T8B8B25T/fastq/TTAATCAGCTGGTATT.2.fastq | 4 +
.../fastq/TTAATCAGCTGGTATT.barcode_1.fastq | 4 +
.../fastq/TTAATCAGCTGGTATT.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/TTATATCTTCATGTCT.1.fastq | 4 +
.../25T8B8B25T/fastq/TTATATCTTCATGTCT.2.fastq | 4 +
.../fastq/TTATATCTTCATGTCT.barcode_1.fastq | 4 +
.../fastq/TTATATCTTCATGTCT.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/TTCCCCAGTGCTTTTA.1.fastq | 0
.../25T8B8B25T/fastq/TTCCCCAGTGCTTTTA.2.fastq | 0
.../fastq/TTCCCCAGTGCTTTTA.barcode_1.fastq | 0
.../fastq/TTCCCCAGTGCTTTTA.barcode_2.fastq | 0
.../25T8B8B25T/fastq/TTCCTCCTCACCATCC.1.fastq | 0
.../25T8B8B25T/fastq/TTCCTCCTCACCATCC.2.fastq | 0
.../fastq/TTCCTCCTCACCATCC.barcode_1.fastq | 0
.../fastq/TTCCTCCTCACCATCC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/TTCTCATCTTCCTTCC.1.fastq | 0
.../25T8B8B25T/fastq/TTCTCATCTTCCTTCC.2.fastq | 0
.../fastq/TTCTCATCTTCCTTCC.barcode_1.fastq | 0
.../fastq/TTCTCATCTTCCTTCC.barcode_2.fastq | 0
.../25T8B8B25T/fastq/TTGAATAGATATCCGA.1.fastq | 4 +
.../25T8B8B25T/fastq/TTGAATAGATATCCGA.2.fastq | 4 +
.../fastq/TTGAATAGATATCCGA.barcode_1.fastq | 4 +
.../fastq/TTGAATAGATATCCGA.barcode_2.fastq | 4 +
.../25T8B8B25T/fastq/barcode_double.params | 0
.../picard/illumina/25T8B8B25T/library.params | 0
.../picard/illumina/25T8B8B25T/sams/AACTTGAC.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/AAGACACT.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/ACAGGTAT.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/ACAGTTGA.sam | 6 +
.../picard/illumina/25T8B8B25T/sams/ACCAACTG.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/ACCTACTG.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/ACTAAGAC.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/AGGTCGCA.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/AGGTGCGA.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/AGGTTATC.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/AGTTGCTT.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/ATAGCGTC.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/ATTATCAA.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/ATTGTCTG.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/CAATAGTC.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/CAGCAAGG.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/CAGCGGTA.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/CATGCTTA.sam | 6 +
.../picard/illumina/25T8B8B25T/sams/CATGCTTT.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/CATGTTCG.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/CCAGAGCT.sam | 6 +
.../picard/illumina/25T8B8B25T/sams/CCCGATTT.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/CCTATGCC.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/CCTATTCT.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/CCTCTTCT.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/CCTCTTTC.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/CCTTCGCA.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/CCTTCTTT.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/CGCTATGT.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/CTACCAGG.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/CTCCCTCT.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/CTGTAATC.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/GACCAGGA.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/GCCGTCGA.sam | 6 +
.../picard/illumina/25T8B8B25T/sams/GCCTAGCC.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/GCTATCCA.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/GTATAACA.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/GTCTGATG.sam | 4 +
testdata/picard/illumina/25T8B8B25T/sams/N.sam | 40 +
.../picard/illumina/25T8B8B25T/sams/TACTTAGC.sam | 6 +
.../picard/illumina/25T8B8B25T/sams/TCCCCGTT.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/TCCTTGGT.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/TCGCCTTG.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/TGCAAGTA.sam | 6 +
.../picard/illumina/25T8B8B25T/sams/TGCTCGAC.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/TGTAATCA.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/TGTATCTC.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/TGTCGGTT.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/TGTTCCGA.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/TTAATCAG.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/TTATATCT.sam | 4 +
.../picard/illumina/25T8B8B25T/sams/TTCCCCAG.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/TTCCTCCT.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/TTCTCATC.sam | 2 +
.../picard/illumina/25T8B8B25T/sams/TTGAATAG.sam | 4 +
.../illumina/25T8B8B25T/sams/barcode_double.params | 0
.../Intensities/BaseCalls/L001/C1.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C10.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C100.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C101.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C102.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C103.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C104.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C105.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C106.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C107.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C108.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C109.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C11.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C110.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C111.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C112.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C113.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C114.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C115.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C116.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C117.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C118.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C119.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C12.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C120.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C121.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C122.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C123.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C124.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C125.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C126.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C127.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C128.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C129.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C13.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C130.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C131.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C132.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C133.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C134.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C135.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C136.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C137.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C138.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C139.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C14.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C140.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C141.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C142.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C143.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C144.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C145.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C146.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C147.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C148.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C149.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C15.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C150.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C151.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C152.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C153.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C154.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C155.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C156.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C157.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C158.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C159.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C16.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C160.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C161.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C162.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C163.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C164.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C165.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C166.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C167.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C168.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C169.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C17.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C170.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C171.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C172.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C173.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C174.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C175.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C176.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C177.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C178.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C179.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C18.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C180.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C181.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C182.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C183.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C184.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C185.1/s_1_1101.bcl | Bin
.../Intensities/BaseCalls/L001/C186.1/s_1_1101.bcl | Bin
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testdata/picard/vcf/CEUTrio-snps_del_line.vcf | 405 +
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...eDiff_MinDp.genotype_concordance_detail_metrics | 21 +
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...ceDiff.genotype_concordance_contingency_metrics | 11 +
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testdata/tribble/large.txt | 165 -
testdata/tribble/seekTest.txt | 5 -
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3723 files changed, 80130 insertions(+), 215957 deletions(-)
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