[med-svn] [mothur] annotated tag debian/1.36.1-1 created (now a581991)

[Tomasz Buchert]

This is an automated email from the git hooks/post-receive script.

tomasz pushed a change to annotated tag debian/1.36.1-1
in repository mothur.

        at  a581991   (tag)
   tagging  2ef20fde4f3923f8b83f5b2848b6cc9a8bb22074 (commit)
  replaces  debian/1.33.3+dfsg-2
 tagged by  Tomasz Buchert
        on  Sat Sep 12 10:31:37 2015 +0200

- Log -----------------------------------------------------------------
mothur Debian release 1.36.1-1
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Aaron M. Ucko (3):
      Start work on mothur 1.31.2+dfsg-2, to fix #721770 (ia64 FTBFS).
      debian/patches/makefile.patch: Leave off -m64, which ia64 doesn't
      Finalize mothur 1.31.2+dfsg-2 for unstable (as a team upload).

Andreas Tille (41):
      Provide watch file; rewrite get-orig-source based on the last version obtained by uscan
      Make latest version build
      Added upstream-metadata.yaml
      Several polishing, remarks about obtaining source in watch file, NO LICENSE!, manpage
      Do not link against unneeded libncurses
      Finally uploaded latest version of mothur to unstable after license was clarified with upstream
      Re-added Tim's changelog entry for lucid (even if I do not know, whether this is needed)
      New upstream version with explicite copyright statement uploaded to new
      Clarified copyright issues
      New upstream version
      Upload to unstable after readding quilt (did not build in pbuilder otherwise), upstream spelling errors ignored for the moment
      New upstream version and fix for FTBFS (-msse)
      Patch to build on any UNIX (incl. BSD)
      New upstream version
      fixed typo: s/TITILE/TITLE/; moved DOI+PMID to references
      Adapted patches to new upstream version
      get-orig-source more silent; debhelper 9; Build-Depends: gfortran
      Upload to unstable and DEP5 changes and verified using
      Upload new upstream version with adapted patches
      New upstream version; More complete Authors field in proper BibTeX format
      Use dversionmangle to properly detect upstream version
      Hopefully BioLinux will use ~repack in the future - enable also this dversionmangle expression
      drop explicite quilt dependency which is just given by source format 3.0 (quilt)
      Add Files-Excluded to document what was removed from original source
      Fit new version of suggested uscan implementation
      Use enhanced uscan for new upstream version
      cme fix dpkg-control
      Debhelper 9
      Refresh patches
      use anonscm for Vcs fields
      Hardening for uchime
      Add manpage for uchime
      Fix some spellings
      Link mothur-mpi manpage to mothur manpage
      Upload to unstable
      New upstream version (adapted patches)
      Standards-Version: 3.9.5
      Upload to unstable
      New upstream version
      Release changes of BioLinux into Debian
      move packaging from SVN to Git

Charles Plessy (5):
      In version 1.17.3, there is a LICENSE file that indicates GPL version 3.
      Proofread copyright file, and validated syntax with the following command.
      Renamed debian/upstream-metadata.yaml to debian/upstream.
      debian/upstream: Moved DOI and PMID to the Reference namespace.
      Corrected the files that did not validate with YAML::XS.

James McCoy (1):
      Move debian/upstream to debian/upstream/metadata

Sri Girish Srinivasa Murthy (6):
      Rudimentary packaging of Mothur.w
      More improvements.
      Set mergeWIthUpstream flag
      set source format to 3.0 (quilt)
      The Makefile was helped with an -f option to rm to allow for dpkg-buildpackage's initial clean.
      Added "clean" target.

Steffen Moeller (5):
      Improved description, downloading.
      Adjusting group management.
      Update to latest upstream.
      Added previously forgotten patch to get the makefile to make
      New upstream version, "make clean" patch no longer required

Thorsten Alteholz (1):
      preparation of new version

Tim Booth (6):
      Minor fixes to clean: target of rules file and copyright, still no license for this package.
      Mothur 1.18 changes the layout of the upstream zipfile.
      Fixed auto_clean to remove files in uchime_src.
      Updated for the latest Mothur (only tested on Ubuntu)
      Committing various tweaks made for Bio-Linux but relevant for Debian.
      Add the important .pat files and tell Mothur how to find them (certainly not

Tomasz Buchert (27):
      Merge branch 'svn'
      watch: switch to github
      d/copyright: no need to exclude files now
      d/*: dont repack upstream tarball
      watch: remove dfsg suffix
      rules: use parallel
      rules: make build simpler
      Imported Upstream version 1.36.1
      Merge tag 'upstream/1.36.1'
      patches: refreshed
      rules: update to new upstream directory structure
      d/changelog: new entry (+ me in uploaders)
      XXX: skip MPI build (for debug)
      d/control: build with boost
      d/mothur.install: drop pat files
      d/patches: more spelling corrections
      d/copyright: update
      d/patches: fix wrong patch
      d/patches: pass CXXFLAGS too
      d/control: bump std-ver to 3.9.6
      d/patches: pass CXX properly
      activate MPI build
      Allow to specify MPI compiler
      Add note about using ccache (and removed previous note)
      d/changelog: update
      d/mothur.1: give credit where it is due
      release

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