[med-svn] r20064 - in trunk/packages/minc/minc-tools/tags: . 2.3.00-1/debian 2.3.00-1/debian/patches
Steven Michael Robbins
smr at moszumanska.debian.org
Sun Sep 13 01:28:16 UTC 2015
Author: smr
Date: 2015-09-13 01:28:16 +0000 (Sun, 13 Sep 2015)
New Revision: 20064
Added:
trunk/packages/minc/minc-tools/tags/2.3.00-1/
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/changelog
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/control
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/build-with-libnifti
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/series
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/rules
Removed:
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/changelog
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/control
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/acrnema-version.patch
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/clang.patch
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/fix-crash-filename-null-voxel-loop.patch
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/fix-crash-filename-null.patch
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/makefile.patch
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/maxpathlen.patch
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/pod_fix.diff
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/series
trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/rules
Log:
[svn-buildpackage] Tagging minc-tools 2.3.00-1
Deleted: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/changelog
===================================================================
--- trunk/packages/minc/minc-tools/trunk/debian/changelog 2015-09-03 10:45:38 UTC (rev 20026)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/changelog 2015-09-13 01:28:16 UTC (rev 20064)
@@ -1,395 +0,0 @@
-minc (2.2.00-6) unstable; urgency=medium
-
- * Apply two patches fixing Mahem test issues. Thanks to Martin
- Steghöfer <martin at steghoefer.eu>
- Closes: #716511, #716616
- * cme fix dpkg-control
-
- -- Andreas Tille <tille at debian.org> Mon, 06 Oct 2014 09:49:50 +0200
-
-minc (2.2.00-5) unstable; urgency=medium
-
- [ Gilles Filippini ]
- * rules: Support hdf5 1.8.13 new packaging layout. Closes: #756684.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 02 Aug 2014 12:06:50 -0500
-
-minc (2.2.00-4) unstable; urgency=medium
-
- * Apply patch provided by Alexander Ovchinnikov to build with clang
- (thanks to Alexander)
- Closes: 741744
- * cme fix dpkg-control
- * debian/copyright: DEP5
-
- -- Andreas Tille <tille at debian.org> Mon, 05 May 2014 11:21:48 +0200
-
-minc (2.2.00-3) unstable; urgency=low
-
- * patches/maxpathlen.patch: New. Work around missing MAXPATHLEN on
- hurd.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 14 Sep 2013 00:39:06 -0500
-
-minc (2.2.00-2) unstable; urgency=low
-
- * patches/pod_fix.diff: New. Fix POD documentation to comply with
- stricter parsing of perl 5.18. Closes: #719502.
-
- * rules: disable parallel build; causes tests to fail inexplicably.
-
- -- Steve M. Robbins <smr at debian.org> Fri, 13 Sep 2013 23:22:53 -0500
-
-minc (2.2.00-1) unstable; urgency=low
-
- * New upstream.
- * patches/hdfv2-fixes.patch: Remove. Applied upstream.
-
- * patches/makefile.patch: New. Fix build failure.
- * patches/acrnema-version.patch: New. Add proper versioning to
- libacr_nema.
-
- * rules: Use "--with autoreconf" since new patches affect Makefile.am.
-
- * rules:
- * control: SOVERSION bump to 3; new package name libminc2-3.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 13 Oct 2012 23:09:25 -0500
-
-minc (2.1.10-1) unstable; urgency=low
-
- * New upstream.
-
- * patches/03_mincview.diff: Remove. Script mincview rewritten to use
- Imagemagick
-
- * patches/decompress-whole-file.diff:
- * patches/read_file_names-refactor.patch: Remove. Applied upstream.
- * rules: Remove use of dh_autoreconf.
-
- * patches/hdfv2-fixes.patch: New. Ensure using HDF5 v2 API.
-
- * control: Remove dependency and build-dependency on csh.
-
- -- Steve M. Robbins <smr at debian.org> Sun, 26 Feb 2012 01:37:47 -0600
-
-minc (2.1.00-5) unstable; urgency=low
-
- * patches/mincaverage-pathmax.patch: Remove.
- * patches/read_file_names-refactor.patch: New. Refactored duplicated
- PATH_MAX-using code into library. Need to run autoreconf because
- Makefile.am changed.
-
- * rules: Fix errors and really disable tests on sparc.
-
- -- Steve M. Robbins <smr at debian.org> Mon, 20 Feb 2012 15:00:32 -0600
-
-minc (2.1.00-4) unstable; urgency=low
-
- * source/format: Set to 3.0 (quilt), so that patches are applied.
-
- * patches/mincaverage-pathmax.patch: New. Work around missing PATH_MAX
- definition; fixes FTBFS on hurd.
-
- * rules: Tests are buggy, but do work on most architectures. Disable on
- sparc.
-
- -- Steve M. Robbins <smr at debian.org> Sun, 19 Feb 2012 21:58:51 -0600
-
-minc (2.1.00-3) unstable; urgency=low
-
- * control: Switch to (serial) libhdf5-dev, to avoid conflict with serial
- netcdf. Closes: #658307.
-
- * control:
- * rules: Switch from cdbs to debhelper's dh (compat level 9).
-
- -- Steve M. Robbins <smr at debian.org> Sun, 19 Feb 2012 08:53:04 -0600
-
-minc (2.1.00-2) unstable; urgency=low
-
- * patches/decompress-whole-file.diff: New. Always decompress entire
- file to support compressed MINC2 files. Closes: #585676.
-
- -- Steve M. Robbins <smr at debian.org> Sun, 18 Dec 2011 20:47:03 -0600
-
-minc (2.1.00-1) unstable; urgency=low
-
- * New upstream.
-
- -- Steve M. Robbins <smr at debian.org> Tue, 17 Aug 2010 22:26:16 -0500
-
-minc (2.0.18+cvs20100518-1) unstable; urgency=low
-
- * Pull upstream CVS, contains fixes for netcdf 4. Closes: #577060,
- #581296.
-
- * control: replace libhdf5-*-dev (differing by architecture) by
- libhdf5-mpi-dev.
-
- -- Steve M. Robbins <smr at debian.org> Tue, 18 May 2010 22:53:30 -0500
-
-minc (2.0.18-1) unstable; urgency=low
-
- * New upstream version.
-
- -- Steve M. Robbins <smr at debian.org> Mon, 20 Jul 2009 05:24:57 -0500
-
-minc (2.0.17-1) unstable; urgency=low
-
- * New upstream version.
-
- * patches/04_manpages.diff:
- * debian/patches/05_parseargv.diff: Remove; applied upstream.
-
- -- Steve M. Robbins <smr at debian.org> Tue, 20 Jan 2009 19:37:41 -0600
-
-minc (2.0.16-4) unstable; urgency=low
-
- * debian/patches/05_parseargv.diff: New. Patch from upstream to fix arg
- parsing on 64bits. Closes: #510629. This was also the root cause of
- mincheader and mincdiff failing. Closes: #506276.
-
- * debian/control: Add ${misc:Depends}, since we use debhelper.
-
- * debian/rules: Do not install test code acr_test, dicom_test.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 03 Jan 2009 16:29:06 -0600
-
-minc (2.0.16-3) unstable; urgency=low
-
- * debian/control: Extend previous fix from build-depends to libminc-dev
- depends; i.e. use OpenMPI, except for certain architectures that it
- doesn't support; in the latter case, use LAM.
-
- -- Steve M. Robbins <smr at debian.org> Thu, 30 Oct 2008 01:10:55 -0500
-
-minc (2.0.16-2) unstable; urgency=low
-
- * debian/control: Use OpenMPI, except for certain architectures that it
- doesn't support; in the latter case, use LAM.
-
- -- Steve M. Robbins <smr at debian.org> Mon, 27 Oct 2008 01:11:21 -0500
-
-minc (2.0.16-1) unstable; urgency=low
-
- * New upstream release.
- - debian/patches/02_mincedit-no-escape-chars: Remove. Applied upstream.
-
- * debian/control: Switch dependencies from libhdf5-serial-dev to
- libhdf5-openmpi-dev.
- * debian/rules: Add CFLAGS=-I/usr/include/mpi to configure step so that
- mpi.h is found.
-
- * debian/control: Remove tetex-bin from build-depends (was alternative
- to texlive-latex-base). Update Standards-Version to 3.8.0 (no
- changes).
-
- * debian/patches/04_manpages.diff: Fix errors in manpages, mainly
- removal of trailing TAB characters.
-
- * debian/rules: Adhere to parallel keyword in DEB_BUILD_OPTIONS.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 11 Oct 2008 23:55:42 -0500
-
-minc (2.0.15-3) unstable; urgency=low
-
- [ Charles Plessy ]
- * debian/copyright: added upstream contact information.
-
- [ Steve M. Robbins ]
- * debian/patches/02_mincedit-no-escape-chars.diff: New. Patch mincedit
- to remove extraneous \n strings. Closes: 486048.
- * debian/control: Replace depends on netcdfg-dev by libnetcdf-dev.
-
- -- Steve M. Robbins <smr at debian.org> Thu, 19 Jun 2008 07:40:18 -0500
-
-minc (2.0.15-2) unstable; urgency=low
-
- [ David Paleino ]
- * debian/rules:
- - conditionally add -mieee on Alpha (Closes: #368263)
-
- [ Steve M. Robbins ]
- * debian/rules: Do not run the tests, since they are broken in many
- ways; e.g. int functions without a return statement, checking
- floating-point values without a tolerance, and some that require a
- list of files on the command line but are given none.
- Closes: #475808.
-
- -- Steve M. Robbins <smr at debian.org> Thu, 05 Jun 2008 09:24:59 -0500
-
-minc (2.0.15-1) unstable; urgency=low
-
- [ Charles Plessy ]
- * Changed the doc-base section according to the new policy.
-
- [ David Paleino ]
- * New upstream release
- * debian/patches/:
- - 01_mincedit-sensible-viewer.diff updated
- - 02_testdir-runtests.diff removed, it has been merged upstream
-
- -- Steve M. Robbins <smr at debian.org> Sat, 31 May 2008 05:53:26 -0500
-
-minc (2.0.14-2) unstable; urgency=low
-
- * rules: Don't install byte_swap or extract; can use "dd" instead of
- these tools. Closes: #459834.
-
- * control: Package minc-tools depends on libgetopt-tabular-perl.
- * rules: Don't install Tabular.pm.
- * Getopt-Tabular-0.3/Tabular.pm: Remove.
- * patches/04_progs-use-lib.diff: Remove.
- * copyright: Remove Getopt-Tabular license text.
-
- -- Steve M. Robbins <smr at debian.org> Fri, 11 Jan 2008 00:30:23 -0600
-
-minc (2.0.14-1) unstable; urgency=low
-
- * New upstream version. Closes: #450922.
-
- * control: Set Maintainer to debian-med-packaging.
- Add build-depends for libhdf5-serial-dev, texlive-latex-base.
- Rename package libminc0 --> libminc2-1.
- Rename package libminc0-dev --> libminc-dev.
- Package libminc-dev depends on libhdf5-serial-dev.
- Package minc-tools depends on imagemagick.
-
- * rules: Configure with --enable-minc2 and --enable-acr-nema.
-
- * Getopt-Tabular-0.3/Tabular.pm: New. Perl module required
- for mincpik and xfmflip. Closes: #457074.
-
- * patches/02_testdir-runtests.diff: New. Fix test scripts.
-
- * patches/03_mincview.diff: New. Use 'display' from ImageMagick rather
- than 'xv' to view images. Closes: #457072.
-
- * patches/04_progs-use-lib.diff: New. Add "use lib" declaration to find
- the private Getopt::Tabular.
-
- -- Steve M. Robbins <smr at debian.org> Sun, 06 Jan 2008 20:40:29 -0600
-
-minc (1.5-2) NEVER UPLOADED; urgency=low
-
- * Rewrite build system using cdbs.
- - patches/01_mincedit-sensible-viewer.diff: New. Obtained from
- existing Debian diff.
-
- * control: Build-depend on texlive-latex-base | tetex-bin, rather
- than just tetex-bin. Update to Standards-Version 3.7.3 (no change
- required). Use ${binary:Version} rather than ${Source-Version}
- for libminc0-dev dependency on libminc0. Add Homepage and Vcs-Svn
- header fields.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 29 Dec 2007 15:10:53 -0600
-
-minc (1.5-1) unstable; urgency=low
-
- * New upstream.
-
- -- Steve M. Robbins <smr at debian.org> Mon, 13 Nov 2006 23:26:13 -0600
-
-minc (1.4.1-1) unstable; urgency=low
-
- * New upstream.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 11 Nov 2006 22:14:54 -0600
-
-minc (1.4-4) unstable; urgency=low
-
- * testdir/create_grid_xfm.c: initialize minc_input_options properly.
- Closes: #352183.
-
- -- Steve M. Robbins <smr at debian.org> Sat, 18 Feb 2006 17:33:37 -0500
-
-minc (1.4-3) unstable; urgency=low
-
- * Build-depend on csh. Closes: #351826.
-
- -- Steve M. Robbins <smr at debian.org> Tue, 7 Feb 2006 20:02:56 -0500
-
-minc (1.4-2) unstable; urgency=low
-
- * Rebuild to pick up new netcdf library, which changed due to
- C++ ABI transition (#346312).
-
- -- Steve M. Robbins <smr at debian.org> Sun, 5 Feb 2006 13:45:22 -0500
-
-minc (1.4-1) unstable; urgency=low
-
- * New upstream version.
-
- * Omit dependency on essential package debianutils (for sensible-editor).
- Closes: #316425.
-
- -- Steve M. Robbins <smr at debian.org> Sun, 3 Jul 2005 20:31:25 -0400
-
-minc (1.3-3) unstable; urgency=low
-
- * progs/mincedit/mincedit: use "sensible-editor" rather than "emacs".
- Closes: #292194.
-
- -- Steve M. Robbins <smr at debian.org> Thu, 27 Jan 2005 22:21:22 -0500
-
-minc (1.3-2) unstable; urgency=low
-
- * debian/rules: package minc-tools depends on libtext-format-perl
- Closes: #278840.
-
- -- Steve M. Robbins <smr at debian.org> Sun, 28 Nov 2004 14:33:06 -0500
-
-minc (1.3-1) unstable; urgency=low
-
- * New upstream version.
- Re-ran all auto*-tools machinery, as upstream used fairly old versions.
-
- * configure.in: Don't use AC_CONFIG_LINKS to generate link
- volume_io/Include/volume_io to directory volume_io/Include as
- autoconf 2.59 chokes on it. Use shell commands instead.
-
- * volume_io/Include/internal_volume_io.h: Do not include "config.h".
- * volume_io/Prog_utils/files.c: Do include "config.h".
- * volume_io/Prog_utils/time.c: Restore call to sysconf( _SC_CLK_TCK ),
- wrapped in #if HAVE_SYSCONF.
-
- -- Steve M. Robbins <smr at debian.org> Sun, 28 Nov 2004 14:22:03 -0500
-
-minc (1.2-1) unstable; urgency=low
-
- * New upstream version.
-
- * debian/control: minc-tools depend on netcdf-bin (for ncdump).
-
- -- Steve M. Robbins <smr at debian.org> Sat, 20 Dec 2003 11:22:09 -0500
-
-minc (1.1-1) unstable; urgency=low
-
- * New upstream.
- - build shared lib package
- - rename devel package to libminc0-dev
-
- -- Steve M. Robbins <smr at debian.org> Sat, 25 Jan 2003 18:25:04 -0500
-
-minc (1.0-2) unstable; urgency=low
-
- * libminc-dev: Depend on netcdfg-dev.
-
- * minc-tools: Use "csh|c-shell" in dependency line, remove dependency
- on "awk" on advice from lintian.
-
- * Update from upstream CVS.
-
- -- Steve M. Robbins <smr at debian.org> Wed, 11 Dec 2002 12:27:36 -0500
-
-minc (1.0-1) unstable; urgency=low
-
- * Initial Debian package. Closes: #153629.
-
- * Patches from upstream CVS:
- - libsrc/ParseArgv.h: declare as "extern C"
- - progs/mincstats/mincstats.c: fix segfault
-
- -- Steve M. Robbins <smr at debian.org> Mon, 29 Jul 2002 16:06:56 -0400
-
Copied: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/changelog (from rev 20058, trunk/packages/minc/minc-tools/trunk/debian/changelog)
===================================================================
--- trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/changelog (rev 0)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/changelog 2015-09-13 01:28:16 UTC (rev 20064)
@@ -0,0 +1,401 @@
+minc-tools (2.3.00-1) unstable; urgency=medium
+
+ * New upstream release.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 12 Sep 2015 19:49:48 -0500
+
+minc (2.2.00-6) unstable; urgency=medium
+
+ * Apply two patches fixing Mahem test issues. Thanks to Martin
+ Steghöfer <martin at steghoefer.eu>
+ Closes: #716511, #716616
+ * cme fix dpkg-control
+
+ -- Andreas Tille <tille at debian.org> Mon, 06 Oct 2014 09:49:50 +0200
+
+minc (2.2.00-5) unstable; urgency=medium
+
+ [ Gilles Filippini ]
+ * rules: Support hdf5 1.8.13 new packaging layout. Closes: #756684.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 02 Aug 2014 12:06:50 -0500
+
+minc (2.2.00-4) unstable; urgency=medium
+
+ * Apply patch provided by Alexander Ovchinnikov to build with clang
+ (thanks to Alexander)
+ Closes: 741744
+ * cme fix dpkg-control
+ * debian/copyright: DEP5
+
+ -- Andreas Tille <tille at debian.org> Mon, 05 May 2014 11:21:48 +0200
+
+minc (2.2.00-3) unstable; urgency=low
+
+ * patches/maxpathlen.patch: New. Work around missing MAXPATHLEN on
+ hurd.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 14 Sep 2013 00:39:06 -0500
+
+minc (2.2.00-2) unstable; urgency=low
+
+ * patches/pod_fix.diff: New. Fix POD documentation to comply with
+ stricter parsing of perl 5.18. Closes: #719502.
+
+ * rules: disable parallel build; causes tests to fail inexplicably.
+
+ -- Steve M. Robbins <smr at debian.org> Fri, 13 Sep 2013 23:22:53 -0500
+
+minc (2.2.00-1) unstable; urgency=low
+
+ * New upstream.
+ * patches/hdfv2-fixes.patch: Remove. Applied upstream.
+
+ * patches/makefile.patch: New. Fix build failure.
+ * patches/acrnema-version.patch: New. Add proper versioning to
+ libacr_nema.
+
+ * rules: Use "--with autoreconf" since new patches affect Makefile.am.
+
+ * rules:
+ * control: SOVERSION bump to 3; new package name libminc2-3.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 13 Oct 2012 23:09:25 -0500
+
+minc (2.1.10-1) unstable; urgency=low
+
+ * New upstream.
+
+ * patches/03_mincview.diff: Remove. Script mincview rewritten to use
+ Imagemagick
+
+ * patches/decompress-whole-file.diff:
+ * patches/read_file_names-refactor.patch: Remove. Applied upstream.
+ * rules: Remove use of dh_autoreconf.
+
+ * patches/hdfv2-fixes.patch: New. Ensure using HDF5 v2 API.
+
+ * control: Remove dependency and build-dependency on csh.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 26 Feb 2012 01:37:47 -0600
+
+minc (2.1.00-5) unstable; urgency=low
+
+ * patches/mincaverage-pathmax.patch: Remove.
+ * patches/read_file_names-refactor.patch: New. Refactored duplicated
+ PATH_MAX-using code into library. Need to run autoreconf because
+ Makefile.am changed.
+
+ * rules: Fix errors and really disable tests on sparc.
+
+ -- Steve M. Robbins <smr at debian.org> Mon, 20 Feb 2012 15:00:32 -0600
+
+minc (2.1.00-4) unstable; urgency=low
+
+ * source/format: Set to 3.0 (quilt), so that patches are applied.
+
+ * patches/mincaverage-pathmax.patch: New. Work around missing PATH_MAX
+ definition; fixes FTBFS on hurd.
+
+ * rules: Tests are buggy, but do work on most architectures. Disable on
+ sparc.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 19 Feb 2012 21:58:51 -0600
+
+minc (2.1.00-3) unstable; urgency=low
+
+ * control: Switch to (serial) libhdf5-dev, to avoid conflict with serial
+ netcdf. Closes: #658307.
+
+ * control:
+ * rules: Switch from cdbs to debhelper's dh (compat level 9).
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 19 Feb 2012 08:53:04 -0600
+
+minc (2.1.00-2) unstable; urgency=low
+
+ * patches/decompress-whole-file.diff: New. Always decompress entire
+ file to support compressed MINC2 files. Closes: #585676.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 18 Dec 2011 20:47:03 -0600
+
+minc (2.1.00-1) unstable; urgency=low
+
+ * New upstream.
+
+ -- Steve M. Robbins <smr at debian.org> Tue, 17 Aug 2010 22:26:16 -0500
+
+minc (2.0.18+cvs20100518-1) unstable; urgency=low
+
+ * Pull upstream CVS, contains fixes for netcdf 4. Closes: #577060,
+ #581296.
+
+ * control: replace libhdf5-*-dev (differing by architecture) by
+ libhdf5-mpi-dev.
+
+ -- Steve M. Robbins <smr at debian.org> Tue, 18 May 2010 22:53:30 -0500
+
+minc (2.0.18-1) unstable; urgency=low
+
+ * New upstream version.
+
+ -- Steve M. Robbins <smr at debian.org> Mon, 20 Jul 2009 05:24:57 -0500
+
+minc (2.0.17-1) unstable; urgency=low
+
+ * New upstream version.
+
+ * patches/04_manpages.diff:
+ * debian/patches/05_parseargv.diff: Remove; applied upstream.
+
+ -- Steve M. Robbins <smr at debian.org> Tue, 20 Jan 2009 19:37:41 -0600
+
+minc (2.0.16-4) unstable; urgency=low
+
+ * debian/patches/05_parseargv.diff: New. Patch from upstream to fix arg
+ parsing on 64bits. Closes: #510629. This was also the root cause of
+ mincheader and mincdiff failing. Closes: #506276.
+
+ * debian/control: Add ${misc:Depends}, since we use debhelper.
+
+ * debian/rules: Do not install test code acr_test, dicom_test.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 03 Jan 2009 16:29:06 -0600
+
+minc (2.0.16-3) unstable; urgency=low
+
+ * debian/control: Extend previous fix from build-depends to libminc-dev
+ depends; i.e. use OpenMPI, except for certain architectures that it
+ doesn't support; in the latter case, use LAM.
+
+ -- Steve M. Robbins <smr at debian.org> Thu, 30 Oct 2008 01:10:55 -0500
+
+minc (2.0.16-2) unstable; urgency=low
+
+ * debian/control: Use OpenMPI, except for certain architectures that it
+ doesn't support; in the latter case, use LAM.
+
+ -- Steve M. Robbins <smr at debian.org> Mon, 27 Oct 2008 01:11:21 -0500
+
+minc (2.0.16-1) unstable; urgency=low
+
+ * New upstream release.
+ - debian/patches/02_mincedit-no-escape-chars: Remove. Applied upstream.
+
+ * debian/control: Switch dependencies from libhdf5-serial-dev to
+ libhdf5-openmpi-dev.
+ * debian/rules: Add CFLAGS=-I/usr/include/mpi to configure step so that
+ mpi.h is found.
+
+ * debian/control: Remove tetex-bin from build-depends (was alternative
+ to texlive-latex-base). Update Standards-Version to 3.8.0 (no
+ changes).
+
+ * debian/patches/04_manpages.diff: Fix errors in manpages, mainly
+ removal of trailing TAB characters.
+
+ * debian/rules: Adhere to parallel keyword in DEB_BUILD_OPTIONS.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 11 Oct 2008 23:55:42 -0500
+
+minc (2.0.15-3) unstable; urgency=low
+
+ [ Charles Plessy ]
+ * debian/copyright: added upstream contact information.
+
+ [ Steve M. Robbins ]
+ * debian/patches/02_mincedit-no-escape-chars.diff: New. Patch mincedit
+ to remove extraneous \n strings. Closes: 486048.
+ * debian/control: Replace depends on netcdfg-dev by libnetcdf-dev.
+
+ -- Steve M. Robbins <smr at debian.org> Thu, 19 Jun 2008 07:40:18 -0500
+
+minc (2.0.15-2) unstable; urgency=low
+
+ [ David Paleino ]
+ * debian/rules:
+ - conditionally add -mieee on Alpha (Closes: #368263)
+
+ [ Steve M. Robbins ]
+ * debian/rules: Do not run the tests, since they are broken in many
+ ways; e.g. int functions without a return statement, checking
+ floating-point values without a tolerance, and some that require a
+ list of files on the command line but are given none.
+ Closes: #475808.
+
+ -- Steve M. Robbins <smr at debian.org> Thu, 05 Jun 2008 09:24:59 -0500
+
+minc (2.0.15-1) unstable; urgency=low
+
+ [ Charles Plessy ]
+ * Changed the doc-base section according to the new policy.
+
+ [ David Paleino ]
+ * New upstream release
+ * debian/patches/:
+ - 01_mincedit-sensible-viewer.diff updated
+ - 02_testdir-runtests.diff removed, it has been merged upstream
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 31 May 2008 05:53:26 -0500
+
+minc (2.0.14-2) unstable; urgency=low
+
+ * rules: Don't install byte_swap or extract; can use "dd" instead of
+ these tools. Closes: #459834.
+
+ * control: Package minc-tools depends on libgetopt-tabular-perl.
+ * rules: Don't install Tabular.pm.
+ * Getopt-Tabular-0.3/Tabular.pm: Remove.
+ * patches/04_progs-use-lib.diff: Remove.
+ * copyright: Remove Getopt-Tabular license text.
+
+ -- Steve M. Robbins <smr at debian.org> Fri, 11 Jan 2008 00:30:23 -0600
+
+minc (2.0.14-1) unstable; urgency=low
+
+ * New upstream version. Closes: #450922.
+
+ * control: Set Maintainer to debian-med-packaging.
+ Add build-depends for libhdf5-serial-dev, texlive-latex-base.
+ Rename package libminc0 --> libminc2-1.
+ Rename package libminc0-dev --> libminc-dev.
+ Package libminc-dev depends on libhdf5-serial-dev.
+ Package minc-tools depends on imagemagick.
+
+ * rules: Configure with --enable-minc2 and --enable-acr-nema.
+
+ * Getopt-Tabular-0.3/Tabular.pm: New. Perl module required
+ for mincpik and xfmflip. Closes: #457074.
+
+ * patches/02_testdir-runtests.diff: New. Fix test scripts.
+
+ * patches/03_mincview.diff: New. Use 'display' from ImageMagick rather
+ than 'xv' to view images. Closes: #457072.
+
+ * patches/04_progs-use-lib.diff: New. Add "use lib" declaration to find
+ the private Getopt::Tabular.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 06 Jan 2008 20:40:29 -0600
+
+minc (1.5-2) NEVER UPLOADED; urgency=low
+
+ * Rewrite build system using cdbs.
+ - patches/01_mincedit-sensible-viewer.diff: New. Obtained from
+ existing Debian diff.
+
+ * control: Build-depend on texlive-latex-base | tetex-bin, rather
+ than just tetex-bin. Update to Standards-Version 3.7.3 (no change
+ required). Use ${binary:Version} rather than ${Source-Version}
+ for libminc0-dev dependency on libminc0. Add Homepage and Vcs-Svn
+ header fields.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 29 Dec 2007 15:10:53 -0600
+
+minc (1.5-1) unstable; urgency=low
+
+ * New upstream.
+
+ -- Steve M. Robbins <smr at debian.org> Mon, 13 Nov 2006 23:26:13 -0600
+
+minc (1.4.1-1) unstable; urgency=low
+
+ * New upstream.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 11 Nov 2006 22:14:54 -0600
+
+minc (1.4-4) unstable; urgency=low
+
+ * testdir/create_grid_xfm.c: initialize minc_input_options properly.
+ Closes: #352183.
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 18 Feb 2006 17:33:37 -0500
+
+minc (1.4-3) unstable; urgency=low
+
+ * Build-depend on csh. Closes: #351826.
+
+ -- Steve M. Robbins <smr at debian.org> Tue, 7 Feb 2006 20:02:56 -0500
+
+minc (1.4-2) unstable; urgency=low
+
+ * Rebuild to pick up new netcdf library, which changed due to
+ C++ ABI transition (#346312).
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 5 Feb 2006 13:45:22 -0500
+
+minc (1.4-1) unstable; urgency=low
+
+ * New upstream version.
+
+ * Omit dependency on essential package debianutils (for sensible-editor).
+ Closes: #316425.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 3 Jul 2005 20:31:25 -0400
+
+minc (1.3-3) unstable; urgency=low
+
+ * progs/mincedit/mincedit: use "sensible-editor" rather than "emacs".
+ Closes: #292194.
+
+ -- Steve M. Robbins <smr at debian.org> Thu, 27 Jan 2005 22:21:22 -0500
+
+minc (1.3-2) unstable; urgency=low
+
+ * debian/rules: package minc-tools depends on libtext-format-perl
+ Closes: #278840.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 28 Nov 2004 14:33:06 -0500
+
+minc (1.3-1) unstable; urgency=low
+
+ * New upstream version.
+ Re-ran all auto*-tools machinery, as upstream used fairly old versions.
+
+ * configure.in: Don't use AC_CONFIG_LINKS to generate link
+ volume_io/Include/volume_io to directory volume_io/Include as
+ autoconf 2.59 chokes on it. Use shell commands instead.
+
+ * volume_io/Include/internal_volume_io.h: Do not include "config.h".
+ * volume_io/Prog_utils/files.c: Do include "config.h".
+ * volume_io/Prog_utils/time.c: Restore call to sysconf( _SC_CLK_TCK ),
+ wrapped in #if HAVE_SYSCONF.
+
+ -- Steve M. Robbins <smr at debian.org> Sun, 28 Nov 2004 14:22:03 -0500
+
+minc (1.2-1) unstable; urgency=low
+
+ * New upstream version.
+
+ * debian/control: minc-tools depend on netcdf-bin (for ncdump).
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 20 Dec 2003 11:22:09 -0500
+
+minc (1.1-1) unstable; urgency=low
+
+ * New upstream.
+ - build shared lib package
+ - rename devel package to libminc0-dev
+
+ -- Steve M. Robbins <smr at debian.org> Sat, 25 Jan 2003 18:25:04 -0500
+
+minc (1.0-2) unstable; urgency=low
+
+ * libminc-dev: Depend on netcdfg-dev.
+
+ * minc-tools: Use "csh|c-shell" in dependency line, remove dependency
+ on "awk" on advice from lintian.
+
+ * Update from upstream CVS.
+
+ -- Steve M. Robbins <smr at debian.org> Wed, 11 Dec 2002 12:27:36 -0500
+
+minc (1.0-1) unstable; urgency=low
+
+ * Initial Debian package. Closes: #153629.
+
+ * Patches from upstream CVS:
+ - libsrc/ParseArgv.h: declare as "extern C"
+ - progs/mincstats/mincstats.c: fix segfault
+
+ -- Steve M. Robbins <smr at debian.org> Mon, 29 Jul 2002 16:06:56 -0400
+
Deleted: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/control
===================================================================
--- trunk/packages/minc/minc-tools/trunk/debian/control 2015-09-03 10:45:38 UTC (rev 20026)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/control 2015-09-13 01:28:16 UTC (rev 20064)
@@ -1,85 +0,0 @@
-Source: minc
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Steve M. Robbins <smr at debian.org>,
- Andreas Tille <tille at debian.org>
-Section: science
-Priority: optional
-Build-Depends: debhelper (>= 9),
- autotools-dev,
- dh-autoreconf,
- libnetcdf-dev,
- zlib1g-dev,
- texlive-latex-base,
- libhdf5-dev
-Standards-Version: 3.9.6
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/minc/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/minc/trunk/
-Homepage: http://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage
-
-Package: minc-tools
-Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- netcdf-bin,
- libgetopt-tabular-perl,
- libtext-format-perl,
- imagemagick
-Description: MNI medical image format tools
- This package contains tools to manipulate MINC files.
- .
- The Minc file format is a highly flexible medical image file format
- built on top of the NetCDF generalized data format. The format is
- simple, self-describing, extensible, portable and N-dimensional, with
- programming interfaces for both low-level data access and high-level
- volume manipulation. On top of the libraries is a suite of generic
- image-file manipulation tools. The format, libraries and tools are
- designed for use in a medical-imaging research environment: they are
- simple and powerful and make no attempt to provide a pretty interface
- to users.
-
-Package: libminc2-3
-Architecture: any
-Multi-Arch: same
-Section: libs
-Depends: ${shlibs:Depends},
- ${misc:Depends}
-Pre-Depends: ${misc:Pre-Depends}
-Description: MNI medical image format library
- This package contains the libraries libminc2 and libvolume_io2.
- .
- The Minc file format is a highly flexible medical image file format.
- Minc version 1 is built on top of the NetCDF generalized data format.
- Minc version 2 is built on top of the HDF data format. This library
- handles both formats. In each case the format is
- simple, self-describing, extensible, portable and N-dimensional, with
- programming interfaces for both low-level data access and high-level
- volume manipulation. On top of the libraries is a suite of generic
- image-file manipulation tools. The format, libraries and tools are
- designed for use in a medical-imaging research environment : they are
- simple and powerful and make no attempt to provide a pretty interface
- to users.
-
-Package: libminc-dev
-Architecture: any
-Section: libdevel
-Depends: ${misc:Depends},
- libminc2-3 (= ${binary:Version}),
- libnetcdf-dev,
- libhdf5-dev
-Conflicts: libminc0-dev
-Replaces: libminc0-dev
-Description: MNI medical image format development environment
- This package contains the library and headers for libminc2 and
- libvolume_io2.
- .
- The Minc file format is a highly flexible medical image file format.
- Minc version 1 is built on top of the NetCDF generalized data format.
- Minc version 2 is built on top of the HDF data format. This library
- handles both formats. In each case the format is
- simple, self-describing, extensible, portable and N-dimensional, with
- programming interfaces for both low-level data access and high-level
- volume manipulation. On top of the libraries is a suite of generic
- image-file manipulation tools. The format, libraries and tools are
- designed for use in a medical-imaging research environment : they are
- simple and powerful and make no attempt to provide a pretty interface
- to users.
Copied: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/control (from rev 20058, trunk/packages/minc/minc-tools/trunk/debian/control)
===================================================================
--- trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/control (rev 0)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/control 2015-09-13 01:28:16 UTC (rev 20064)
@@ -0,0 +1,42 @@
+Source: minc-tools
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steve M. Robbins <smr at debian.org>,
+ Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ cmake (>= 2.8.5),
+ bison,
+ flex,
+ libminc-dev (>= 2.3),
+ libnifti-dev,
+ libnetcdf-dev,
+ zlib1g-dev,
+ texlive-latex-base,
+ libhdf5-dev
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/minc/minc-tools/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/minc/minc-tools/trunk/
+Homepage: http://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage
+
+Package: minc-tools
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ netcdf-bin,
+ libgetopt-tabular-perl,
+ libtext-format-perl,
+ imagemagick
+Description: MNI medical image format tools
+ This package contains tools to manipulate MINC files.
+ .
+ The Minc file format is a highly flexible medical image file format
+ built on top of the NetCDF generalized data format. The format is
+ simple, self-describing, extensible, portable and N-dimensional, with
+ programming interfaces for both low-level data access and high-level
+ volume manipulation. On top of the libraries is a suite of generic
+ image-file manipulation tools. The format, libraries and tools are
+ designed for use in a medical-imaging research environment: they are
+ simple and powerful and make no attempt to provide a pretty interface
+ to users.
+
Deleted: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/acrnema-version.patch
===================================================================
--- trunk/packages/minc/minc-tools/trunk/debian/patches/acrnema-version.patch 2015-09-03 10:45:38 UTC (rev 20026)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/acrnema-version.patch 2015-09-13 01:28:16 UTC (rev 20064)
@@ -1,10 +0,0 @@
---- a/Makefile.am
-+++ b/Makefile.am
-@@ -555,6 +555,7 @@ libvolume_io2_la_SOURCES = \
- volume_io/Volumes/volume_cache.c \
- volume_io/Volumes/volumes.c
-
-+libacr_nema_la_LDFLAGS = -version-info 3:0:0
- libacr_nema_la_SOURCES = \
- conversion/Acr_nema/acr_io.c \
- conversion/Acr_nema/dicom_client_routines.c \
Copied: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/build-with-libnifti (from rev 20037, trunk/packages/minc/minc-tools/trunk/debian/patches/build-with-libnifti)
===================================================================
--- trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/build-with-libnifti (rev 0)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/build-with-libnifti 2015-09-13 01:28:16 UTC (rev 20064)
@@ -0,0 +1,28 @@
+diff --git a/conversion/CMakeLists.txt b/conversion/CMakeLists.txt
+index eccaece..05325fc 100644
+--- a/conversion/CMakeLists.txt
++++ b/conversion/CMakeLists.txt
+@@ -10,7 +10,7 @@ ADD_DEFINITIONS(-DHAVE_CONFIG_H)
+
+
+ # conversion progs (and libraries)
+-INCLUDE_DIRECTORIES(Acr_nema)
++INCLUDE_DIRECTORIES(Acr_nema /usr/include/nifti)
+ ADD_LIBRARY(acr_nema STATIC
+ Acr_nema/acr_io.c
+ Acr_nema/dicom_client_routines.c
+@@ -50,12 +50,12 @@ TARGET_LINK_LIBRARIES(minctoecat ${VOLUME_IO_LIBRARIES} ${LIBMINC_LIBRARIES} m)
+ ADD_EXECUTABLE(mnc2nii
+ nifti1/mnc2nii.c
+ )
+-TARGET_LINK_LIBRARIES(mnc2nii ${VOLUME_IO_LIBRARIES} ${LIBMINC_LIBRARIES} m)
++TARGET_LINK_LIBRARIES(mnc2nii ${VOLUME_IO_LIBRARIES} ${LIBMINC_LIBRARIES} niftiio m)
+
+ ADD_EXECUTABLE(nii2mnc
+ nifti1/nii2mnc.c
+ )
+-TARGET_LINK_LIBRARIES(nii2mnc ${VOLUME_IO_LIBRARIES} ${LIBMINC_LIBRARIES} m)
++TARGET_LINK_LIBRARIES(nii2mnc ${VOLUME_IO_LIBRARIES} ${LIBMINC_LIBRARIES} niftiio m)
+
+ ADD_EXECUTABLE(upet2mnc
+ micropet/upet2mnc.c
Deleted: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/clang.patch
===================================================================
--- trunk/packages/minc/minc-tools/trunk/debian/patches/clang.patch 2015-09-03 10:45:38 UTC (rev 20026)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/clang.patch 2015-09-13 01:28:16 UTC (rev 20064)
@@ -1,17 +0,0 @@
-Author: Alexander Ovchinnikov <sanek23994 at gmail.com>
-Last-Changed: Sun, 16 Mar 2014 09:11:39 -0400
-Bugs-Debian: https://bugs.debian.org/741744
-Forwarded-Upstream: No
-Description: Build with clang compiler
-
---- a/libsrc2/hyper.c
-+++ b/libsrc2/hyper.c
-@@ -766,7 +766,7 @@ miget_real_value_hyperslab(mihandle_t vo
- miicv_setint(icv, MI_ICV_DO_DIM_CONV, TRUE);
- break;
- default:
-- return;
-+ return (MI_ERROR);
- }
- }
- result = miicv_attach(icv, file_id, var_id);
Deleted: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/fix-crash-filename-null-voxel-loop.patch
===================================================================
--- trunk/packages/minc/minc-tools/trunk/debian/patches/fix-crash-filename-null-voxel-loop.patch 2015-09-03 10:45:38 UTC (rev 20026)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/fix-crash-filename-null-voxel-loop.patch 2015-09-13 01:28:16 UTC (rev 20064)
@@ -1,22 +0,0 @@
-Description: Fix crash when input file cannot be expanded
- This patch fixes a segmentation fault that occurs when an input
- file has a filename extension that indicates compression (e.g.
- ".bz2"), but doesn't really contain content in the corresponding
- compression format. In this case exit with an error message instead
- of just crashing.
-Author: Martin Steghöfer <martin at steghoefer.eu>
-Bug-Debian: http://bugs.debian.org/716511
-
---- a/libsrc/voxel_loop.c
-+++ b/libsrc/voxel_loop.c
-@@ -2354,6 +2354,10 @@ PRIVATE int get_input_mincid(Loopfile_In
- filename = miexpand_file(loopfile_info->input_files[file_num], NULL,
- loopfile_info->headers_only,
- &created_tempfile);
-+ if (!filename) {
-+ fprintf(stderr, "Could not expand file \"%s\"!\n", loopfile_info->input_files[file_num]);
-+ exit(EXIT_FAILURE);
-+ }
- loopfile_info->input_mincid[index] = miopen(filename, NC_NOWRITE);
- if (created_tempfile) {
- (void) remove(filename);
Deleted: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/fix-crash-filename-null.patch
===================================================================
--- trunk/packages/minc/minc-tools/trunk/debian/patches/fix-crash-filename-null.patch 2015-09-03 10:45:38 UTC (rev 20026)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/fix-crash-filename-null.patch 2015-09-13 01:28:16 UTC (rev 20064)
@@ -1,22 +0,0 @@
-Description: Fix crash in mincconcat when header cannot be expanded
- This patch fixes a segmentation fault that occurs when an input
- file has a filename extension that indicates compression (e.g.
- ".bz2"), but doesn't really contain content in the corresponding
- compression format. In this case exit with an error message instead
- of just crashing.
-Author: Martin Steghöfer <martin at steghoefer.eu>
-Bug-Debian: http://bugs.debian.org/716616
-
---- a/progs/mincconcat/mincconcat.c
-+++ b/progs/mincconcat/mincconcat.c
-@@ -701,6 +701,10 @@ static void get_concat_dim_name(Concat_I
-
- /* Expand the file header and open the file */
- filename = miexpand_file(first_filename, NULL, TRUE, &created_tempfile);
-+ if (!filename) {
-+ fprintf(stderr, "Could not expand file \"%s\"!\n", first_filename);
-+ exit(EXIT_FAILURE);
-+ }
- input_mincid = miopen(filename, NC_NOWRITE);
- if (created_tempfile) {
- (void) remove(filename);
Deleted: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/makefile.patch
===================================================================
--- trunk/packages/minc/minc-tools/trunk/debian/patches/makefile.patch 2015-09-03 10:45:38 UTC (rev 20026)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/makefile.patch 2015-09-13 01:28:16 UTC (rev 20064)
@@ -1,56 +0,0 @@
---- a/Makefile.am
-+++ b/Makefile.am
-@@ -274,30 +274,30 @@ m4_files = \
- m4/smr_WITH_BUILD_PATH.m4
-
- ezMINC_files = \
-- ezminc/examples/volume_msq_dist.cpp
-- ezminc/examples/CMakeLists.txt
-- ezminc/examples/fuzzy_volume_similarity.cpp
-- ezminc/examples/trilinear_resample.cpp
-- ezminc/examples/volume_avg.cpp
-- ezminc/examples/volume_gtc_similarity.cpp
-- ezminc/examples/volume_similarity.cpp
-- ezminc/minc_1_simple_rw.cpp
-- ezminc/minc_1_simple_rw.h
-- ezminc/minc_io_4d_volume.h
-- ezminc/minc_io_fixed_vector.h
-- ezminc/minc_io_simple_volume.h
-- ezminc/tests/minc_rw_test2.cpp
-- ezminc/tests/minc_rw_test_4d.cpp
-- ezminc/tests/minc_rw_test_simple.cpp
-- ezminc/tests/CMakeLists.txt
-- ezminc/tests/ezminc_rw_test.cpp
-- ezminc/tests/ezminc_stats.cpp
-- ezminc/minc_1_simple.h
-- ezminc/CMakeLists.txt
-- ezminc/minc_1_rw.cpp
-- ezminc/minc_1_rw.h
-+ ezminc/examples/volume_msq_dist.cpp \
-+ ezminc/examples/CMakeLists.txt \
-+ ezminc/examples/fuzzy_volume_similarity.cpp \
-+ ezminc/examples/trilinear_resample.cpp \
-+ ezminc/examples/volume_avg.cpp \
-+ ezminc/examples/volume_gtc_similarity.cpp \
-+ ezminc/examples/volume_similarity.cpp \
-+ ezminc/minc_1_simple_rw.cpp \
-+ ezminc/minc_1_simple_rw.h \
-+ ezminc/minc_io_4d_volume.h \
-+ ezminc/minc_io_fixed_vector.h \
-+ ezminc/minc_io_simple_volume.h \
-+ ezminc/tests/minc_rw_test2.cpp \
-+ ezminc/tests/minc_rw_test_4d.cpp \
-+ ezminc/tests/minc_rw_test_simple.cpp \
-+ ezminc/tests/CMakeLists.txt \
-+ ezminc/tests/ezminc_rw_test.cpp \
-+ ezminc/tests/ezminc_stats.cpp \
-+ ezminc/minc_1_simple.h \
-+ ezminc/CMakeLists.txt \
-+ ezminc/minc_1_rw.cpp \
-+ ezminc/minc_1_rw.h \
- ezminc/minc_io_exceptions.h
--
-+
- voxeltoworld_SOURCES = progs/coordinates/voxeltoworld.c
-
- worldtovoxel_SOURCES = progs/coordinates/worldtovoxel.c
Deleted: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/maxpathlen.patch
===================================================================
--- trunk/packages/minc/minc-tools/trunk/debian/patches/maxpathlen.patch 2015-09-03 10:45:38 UTC (rev 20026)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/maxpathlen.patch 2015-09-13 01:28:16 UTC (rev 20064)
@@ -1,14 +0,0 @@
---- a/progs/mincmorph/mincmorph.c
-+++ b/progs/mincmorph/mincmorph.c
-@@ -30,6 +30,11 @@
- #define INTERNAL_PREC NC_FLOAT /* should be NC_FLOAT or NC_DOUBLE */
- #define DEF_DOUBLE -DBL_MAX
-
-+#ifndef MAXPATHLEN
-+#define MAXPATHLEN 1024
-+#endif
-+
-+
- /* function prototypes */
- char *get_real_from_string(char *string, double *value);
- char *get_string_from_string(char *string, char **value);
Deleted: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/pod_fix.diff
===================================================================
--- trunk/packages/minc/minc-tools/trunk/debian/patches/pod_fix.diff 2015-09-03 10:45:38 UTC (rev 20026)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/pod_fix.diff 2015-09-13 01:28:16 UTC (rev 20064)
@@ -1,47 +0,0 @@
-From: Dominic Hargreaves <dom at earth.li>
-Subject: Fix POD syntax errors
-
-As of perl 5.18, pod2man aborts on POD syntax errors, so this patch
-fixes a FTBFS.
-
-Bug-Debian: http://bugs.debian.org/719502
-Forwarded: no
-
---- a/progs/mincpik/mincpik.in
-+++ b/progs/mincpik/mincpik.in
-@@ -576,8 +576,11 @@ font point size for the title
-
- create an annotated bar to match the image (use height of the output image)
-
-+=back
-
- =head3 Image range and lookup table options
-+
-+=over 4
-
- =item B<--range>
-
-@@ -595,8 +598,11 @@ automatically determine image range usin
-
- arguments to pass to minclookup
-
-+=back
-
- =head3 Slicing options
-+
-+=over 4
-
- =item B<-s> B<--slice>
-
-@@ -614,8 +620,11 @@ get a coronal (y) slice
-
- get a sagital (x) slice
-
-+=back
-
- =head3 Triplanar options
-+
-+=over 4
-
- =item B<-t> B<--triplanar>
-
Deleted: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/series
===================================================================
--- trunk/packages/minc/minc-tools/trunk/debian/patches/series 2015-09-03 10:45:38 UTC (rev 20026)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/series 2015-09-13 01:28:16 UTC (rev 20064)
@@ -1,8 +0,0 @@
-maxpathlen.patch
-makefile.patch
-01_mincedit-sensible-viewer.diff
-acrnema-version.patch
-pod_fix.diff
-clang.patch
-fix-crash-filename-null-voxel-loop.patch
-fix-crash-filename-null.patch
Copied: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/series (from rev 20063, trunk/packages/minc/minc-tools/trunk/debian/patches/series)
===================================================================
--- trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/series (rev 0)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/patches/series 2015-09-13 01:28:16 UTC (rev 20064)
@@ -0,0 +1,2 @@
+01_mincedit-sensible-viewer.diff
+build-with-libnifti
Deleted: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/rules
===================================================================
--- trunk/packages/minc/minc-tools/trunk/debian/rules 2015-09-03 10:45:38 UTC (rev 20026)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/rules 2015-09-13 01:28:16 UTC (rev 20064)
@@ -1,49 +0,0 @@
-#! /usr/bin/make -f
-
-%:
- dh $@ --with autoreconf --with autotools_dev
-
-
-ARCH := $(shell dpkg-architecture -qDEB_BUILD_ARCH)
-# Tests are buggy; disable test on sparc
-ifeq ($(ARCH),sparc)
- DEB_BUILD_OPTIONS += nocheck
-endif
-
-ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial/libhdf5.so),)
- export DEB_CPPFLAGS_MAINT_APPEND := -I/usr/include/hdf5/serial
- export DEB_LDFLAGS_MAINT_APPEND := -Wl,-L/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial
-endif
-
-DEB_CONFIGURE_EXTRA_FLAGS = --enable-shared --enable-minc2 --enable-acr-nema CFLAGS="$(CFLAGS)"
-
-
-override_dh_auto_configure:
- dh_auto_configure -- $(DEB_CONFIGURE_EXTRA_FLAGS)
-
-ps_docs = doc/prog_ref.ps doc/prog_guide.ps volume_io/Documentation/volume_io.ps
-
-doc/prog_ref.ps doc/prog_guide.ps:
- $(MAKE) -C doc docs
-
-volume_io/Documentation/volume_io.ps:
- $(MAKE) -C volume_io/Documentation docs
-
-override_dh_install: $(ps_docs)
- # minc-tools
- rm -f debian/tmp/usr/bin/byte_swap
- rm -f debian/tmp/usr/bin/extract
- rm -f debian/tmp/usr/bin/acr_test
- rm -f debian/tmp/usr/bin/dicom_test
- dh_install -pminc-tools --autodest debian/tmp/usr/bin
- dh_install -pminc-tools --autodest debian/tmp/usr/share/man
- dh_link -pminc-tools \
- /usr/share/man/man1/voxeltoworld.1 \
- /usr/share/man/man1/worldtovoxel.1
- # libminc2-3
- dh_install -plibminc2-3 --autodest debian/tmp/usr/lib/*/lib*.so.*
- # libminc-dev
- dh_install -plibminc-dev --autodest debian/tmp/usr/lib/*/lib*.so
- dh_install -plibminc-dev --autodest debian/tmp/usr/lib/*/lib*.a
- dh_install -plibminc-dev --autodest debian/tmp/usr/include
- dh_installdocs -plibminc-dev $(ps_docs) debian/index.html
Copied: trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/rules (from rev 20038, trunk/packages/minc/minc-tools/trunk/debian/rules)
===================================================================
--- trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/rules (rev 0)
+++ trunk/packages/minc/minc-tools/tags/2.3.00-1/debian/rules 2015-09-13 01:28:16 UTC (rev 20064)
@@ -0,0 +1,30 @@
+#! /usr/bin/make -f
+
+ARCH = $(shell dpkg-architecture -qDEB_BUILD_ARCH)
+DEB_HOST_MULTIARCH ?= $(shell dpkg-architecture -qDEB_HOST_MULTIARCH)
+
+CMAKE_FLAGS =
+
+
+# Tests are buggy; disable test on sparc
+ifeq ($(ARCH),sparc)
+ DEB_BUILD_OPTIONS += nocheck
+endif
+
+ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial/libhdf5.so),)
+ export DEB_CPPFLAGS_MAINT_APPEND := -I/usr/include/hdf5/serial
+ export DEB_LDFLAGS_MAINT_APPEND := -Wl,-L/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial
+endif
+
+
+
+%:
+ dh $@
+
+override_dh_auto_configure:
+ dh_auto_configure -- $(CMAKE_FLAGS)
+
+override_dh_install:
+ cd debian/minc-tools && mkdir -p usr/share && mv usr/man usr/share
+ dh_link /usr/share/man/man1/voxeltoworld.1 \
+ /usr/share/man/man1/worldtovoxel.1
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