[med-svn] [snakemake] 02/04: Add initial debian packaging of snakemake

[Kevin Murray]

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daube-guest pushed a commit to branch master
in repository snakemake.

commit 5610104d161bdaeed7a0d78b2869ec2de506c46b
Author: Kevin Murray <spam at kdmurray.id.au>
Date:   Sun Sep 13 23:37:33 2015 +1000

    Add initial debian packaging of snakemake
---
 debian/changelog     |  5 +++++
 debian/compat        |  1 +
 debian/control       | 24 ++++++++++++++++++++++++
 debian/copyright     | 34 ++++++++++++++++++++++++++++++++++
 debian/rules         | 15 +++++++++++++++
 debian/source/format |  1 +
 debian/watch         |  4 ++++
 7 files changed, 84 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..e0f5a5e
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+snakemake (3.4-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #798824)
+
+ -- Kevin Murray <spam at kdmurray.id.au>  Sun, 13 Sep 2015 22:58:41 +1000
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..81e00bb
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,24 @@
+Source: snakemake
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging <debian-med-packaging at lists.debian.org>
+Uploaders: Kevin Murray <spam at kdmurray.id.au>
+Build-Depends: debhelper (>= 9),
+               dh-python,
+               python3 (>=3.2)
+Standards-Version: 3.9.6
+Homepage: https://bitbucket.org/johanneskoester/snakemake
+Vcs-Git: git://anonscm.debian.org/debian-med/snakemake.git
+Vcs-Browser: https://anonscm.debian.org/gitweb/?p=debian-med/snakemake.git;a=summary
+
+Package: snakemake
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         ${python3:Depends}
+Description: a pythonic workflow management system
+ Build systems like GNU Make are frequently used to create complicated
+ workflows, e.g. in bioinformatics. This project aims to reduce the
+ complexity of creating workflows by providing a clean and modern domain
+ specific language (DSL) in python style, together with a fast and
+ comfortable execution environment.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..acf3ba8
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,34 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: snakemake
+Upstream-Contact: Johannes Köster <johannes.koester at tu-dortmund.de>
+Source: https://bitbucket.org/johanneskoester/snakemake
+
+Files-excluded: conda,
+		docker
+
+Files: *
+Copyright: 2015 Johannes Köster <johannes.koester at tu-dortmund.de>
+License: Expat
+
+Files: debian/*
+Copyright: 2015 Kevin Murray <spam at kdmurray.id.au>
+License: Expat
+
+License: Expat
+ Permission is hereby granted, free of charge, to any person obtaining a copy
+ of this software and associated documentation files (the "Software"), to deal
+ in the Software without restriction, including without limitation the rights
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ copies of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in all
+ copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ SOFTWARE.
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..fa18f99
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,15 @@
+#!/usr/bin/make -f
+# See debhelper(7) (uncomment to enable)
+# output every command that modifies files on the build system.
+#export DH_VERBOSE = 1
+
+export PYBUILD_NAME=snakemake
+export PYBUILD_DESTDIR_python3=debian/snakemake
+
+# main packaging script based on dh7 syntax
+%:
+	dh $@ --with python3 --buildsystem=pybuild --parallel
+
+get-orig-source:
+		uscan --verbose --force-download --repack --compression xz
+
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..f16e098
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,4 @@
+# Compulsory line, this is a version 3 file
+version=3
+
+https://bitbucket.org/johanneskoester/snakemake/downloads#tag-downloads .*/v(\d\S*)\.tar\.gz

-- 
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