[med-svn] [pbgenomicconsensus] 03/05: Separate scripts from the python package

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif-guest pushed a commit to branch master
in repository pbgenomicconsensus.

commit 1216e3c54625af5adec1f71843c66bff0d829bbf
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Mon Sep 14 23:36:15 2015 -0700

    Separate scripts from the python package
---
 debian/patches/python-scripts     | 22 ++++++++++++++++++++++
 debian/patches/series             |  1 +
 debian/pbgenomicconsensus.install |  7 +++++++
 3 files changed, 30 insertions(+)

diff --git a/debian/patches/python-scripts b/debian/patches/python-scripts
new file mode 100644
index 0000000..2fd0975
--- /dev/null
+++ b/debian/patches/python-scripts
@@ -0,0 +1,22 @@
+Description: Don't install scripts with distutils
+ They are going into a separate package, so there is no need
+ for setuptools to know about it.
+Author: Afif Elghraoui <afif at ghraoui.name>
+Forwarded: not-needed
+Last-Update: 2015-09-14
+--- pbgenomicconsensus.orig/setup.py
++++ pbgenomicconsensus/setup.py
+@@ -15,13 +15,6 @@
+     author='Pacific Biosciences',
+     author_email='devnet at pacificbiosciences.com',
+     license=open('LICENSES').read(),
+-    scripts = ['bin/variantCaller.py',
+-               'bin/summarizeConsensus.py',
+-               'bin/gffToVcf.py',
+-               'bin/gffToBed.py',
+-               'bin/makePbi.py',
+-               'bin/plurality',
+-               'bin/quiver'],
+     packages = find_packages(),
+     package_data={'GenomicConsensus.quiver': ['resources/*/GenomicConsensus/*.ini']},
+     include_package_data=True,
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..65d11d4
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+python-scripts
diff --git a/debian/pbgenomicconsensus.install b/debian/pbgenomicconsensus.install
new file mode 100644
index 0000000..b4743f7
--- /dev/null
+++ b/debian/pbgenomicconsensus.install
@@ -0,0 +1,7 @@
+bin/gffToBed.py	usr/bin
+bin/gffToVcf.py	usr/bin
+bin/makePbi.py	usr/bin
+bin/plurality	usr/bin
+bin/quiver	usr/bin
+bin/summarizeConsensus.py	usr/bin
+bin/variantCaller.py		usr/bin

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pbgenomicconsensus.git