[med-svn] [salmon] 01/01: be more specific in builddeps

[Michael Crusoe]

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misterc-guest pushed a commit to branch master
in repository salmon.

commit 47542d9b33172175a4dd30d8c9381f1cb8be8e47
Author: Michael R. Crusoe <michael.crusoe at gmail.com>
Date:   Sat Sep 19 19:38:59 2015 -0700

    be more specific in builddeps
    
    & describe patches
---
 debian/control                  | 4 ++--
 debian/patches/cmake-adj        | 2 ++
 debian/patches/dependency-fix   | 2 ++
 debian/patches/jellyfish-update | 3 +++
 4 files changed, 9 insertions(+), 2 deletions(-)

diff --git a/debian/control b/debian/control
index 4886d86..cfda684 100644
--- a/debian/control
+++ b/debian/control
@@ -15,8 +15,8 @@ Build-Depends: debhelper (>= 9),
                libboost-serialization-dev,
                libbz2-dev,
                liblzma-dev,
-               jellyfish,
-               bwa,
+               libjellyfish-2.0-dev (>> 2.2.3-2),
+               libbwa-dev,
                pkg-config,
                libjemalloc-dev,
                libcereal-dev,
diff --git a/debian/patches/cmake-adj b/debian/patches/cmake-adj
index 2835162..2225d7f 100644
--- a/debian/patches/cmake-adj
+++ b/debian/patches/cmake-adj
@@ -1,3 +1,5 @@
+Author: Michael R. Crusoe <crusoe at ucdavis.edu>
+Description: Use the symbolic name for the build directory, don't hardcode it
 --- salmon.orig/cmake/TestSalmon.cmake
 +++ salmon/cmake/TestSalmon.cmake
 @@ -7,7 +7,7 @@
diff --git a/debian/patches/dependency-fix b/debian/patches/dependency-fix
index f3b3b59..6f061df 100644
--- a/debian/patches/dependency-fix
+++ b/debian/patches/dependency-fix
@@ -1,3 +1,5 @@
+Author: Michael R. Crusoe <crusoe at ucdavis.edu>
+Description: Use Debian version of dependencies, don't download them
 --- salmon.orig/CMakeLists.txt
 +++ salmon/CMakeLists.txt
 @@ -22,7 +22,7 @@
diff --git a/debian/patches/jellyfish-update b/debian/patches/jellyfish-update
index 9349b44..dcc02f4 100644
--- a/debian/patches/jellyfish-update
+++ b/debian/patches/jellyfish-update
@@ -1,3 +1,6 @@
+Author: Michael R. Crusoe
+Description: There is a newer version of libjellyfish in Debian, update to
+match.
 --- salmon.orig/src/merge_files.cc
 +++ salmon/src/merge_files.cc
 @@ -29,6 +29,8 @@

-- 
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