[med-svn] [microbegps] 01/13: Inject initial packaging for microbegps

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository microbegps.

commit 703278b597d3131658e8b7a12127b602fd068373
Author: Andreas Tille <tille at debian.org>
Date:   Mon May 4 08:19:09 2015 +0000

    Inject initial packaging for microbegps
---
 debian/changelog         |  5 +++++
 debian/compat            |  1 +
 debian/control           | 21 +++++++++++++++++++++
 debian/copyright         | 11 +++++++++++
 debian/rules             | 23 +++++++++++++++++++++++
 debian/source/format     |  1 +
 debian/upstream/metadata | 12 ++++++++++++
 debian/watch             |  3 +++
 8 files changed, 77 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..f0b5f68
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+microbegps (1.0.0-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Mon, 04 May 2015 10:18:29 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..6a04d4b
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,21 @@
+Source: microbegps
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/microbegps/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/microbegps/trunk/
+Homepage: http://sourceforge.net/projects/microbegps/
+
+Package: microbegps
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: Explorative Taxonomic Profiling Tool for Metagenomic Data
+ MicrobeGPS is a bioinformatics tool for the analysis of metagenomic
+ sequencing data. The goal is to profile the composition of metagenomic
+ communities as accurately as possible and present the results to the
+ user in a convenient manner. One main focus is reliability: the tool
+ calculates quality metrics for the estimated candidates and allows the
+ user to identify false candidates easily.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..c76e73d
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,11 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: <pkg>
+Source: <path_to_download>
+
+Files: *
+Copyright: © 20xx-20yy <upstream>
+License: <license>
+
+Files: debian/*
+Copyright: © 2014 maintainername <maintainer at e.mail>
+License: <license>
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..58ec00b
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,23 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+# some helpful variables - uncomment them if needed
+# shamelessly stolen from http://jmtd.net/log/awk/
+#DEBVERS        := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
+#VERSION        := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
+#DEBFLAVOR      := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
+#DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+#DEBIAN_BRANCH  := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
+#GIT_TAG        := $(subst ~,_,$(VERSION))
+
+# alternatively to manually set those variables you can
+#  include /usr/share/cdbs/1/rules/buildvars.mk
+# and use what is set there.  Any hint whether dh might set variables in
+# a similar manner are welcome.
+
+%:
+	dh $@
+
+#get-orig-source:
+#	. debian/get-orig-source
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..f47198b
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,12 @@
+Reference:
+  Author:  Martin S. Lindner and Bernhard Y. Renard
+  Title: Metagenomic Profiling of Known and Unknown Microbes with MicrobeGPS
+  Journal: PLoS One
+  Year: 2015
+  Volume: 10
+  Number: 2
+  Pages: e0117711
+  DOI: 10.1371/journal.pone.0117711
+  PMID: 25643362
+  URL: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0117711
+  eprint: http://www.plosone.org/article/fetchObject.action?uri=info:doi/10.1371/journal.pone.0117711&representation=PDF
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..8e950a0
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+
+http://sf.net/microbegps/MicrobeGPS-(\d[\d\.]+)\.(?:tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))

-- 
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