[med-svn] r20118 - in trunk/packages/R: . r-cran-etm r-cran-etm/trunk r-cran-etm/trunk/debian r-cran-etm/trunk/debian/source r-cran-etm/trunk/debian/tests
Andreas Tille
tille at moszumanska.debian.org
Thu Sep 24 12:02:14 UTC 2015
Author: tille
Date: 2015-09-24 12:02:13 +0000 (Thu, 24 Sep 2015)
New Revision: 20118
Added:
trunk/packages/R/r-cran-etm/
trunk/packages/R/r-cran-etm/trunk/
trunk/packages/R/r-cran-etm/trunk/debian/
trunk/packages/R/r-cran-etm/trunk/debian/README.test
trunk/packages/R/r-cran-etm/trunk/debian/changelog
trunk/packages/R/r-cran-etm/trunk/debian/compat
trunk/packages/R/r-cran-etm/trunk/debian/control
trunk/packages/R/r-cran-etm/trunk/debian/copyright
trunk/packages/R/r-cran-etm/trunk/debian/docs
trunk/packages/R/r-cran-etm/trunk/debian/rules
trunk/packages/R/r-cran-etm/trunk/debian/source/
trunk/packages/R/r-cran-etm/trunk/debian/source/format
trunk/packages/R/r-cran-etm/trunk/debian/tests/
trunk/packages/R/r-cran-etm/trunk/debian/tests/control
trunk/packages/R/r-cran-etm/trunk/debian/tests/run-unit-test
trunk/packages/R/r-cran-etm/trunk/debian/watch
Log:
inject r-cran-etm
Added: trunk/packages/R/r-cran-etm/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-cran-etm/trunk/debian/README.test (rev 0)
+++ trunk/packages/R/r-cran-etm/trunk/debian/README.test 2015-09-24 12:02:13 UTC (rev 20118)
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+To run the unit tests provided by the package you can do
+
+ sh run-unit-test
+
+in this directory.
Added: trunk/packages/R/r-cran-etm/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-etm/trunk/debian/changelog (rev 0)
+++ trunk/packages/R/r-cran-etm/trunk/debian/changelog 2015-09-24 12:02:13 UTC (rev 20118)
@@ -0,0 +1,5 @@
+r-cran-etm (0.6-2-1) UNRELEASED; urgency=low
+
+ * Initial release (closes: #???)
+
+ -- Andreas Tille <tille at debian.org> Thu, 24 Sep 2015 09:59:03 +0200
Added: trunk/packages/R/r-cran-etm/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-etm/trunk/debian/compat (rev 0)
+++ trunk/packages/R/r-cran-etm/trunk/debian/compat 2015-09-24 12:02:13 UTC (rev 20118)
@@ -0,0 +1 @@
+9
Added: trunk/packages/R/r-cran-etm/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-etm/trunk/debian/control (rev 0)
+++ trunk/packages/R/r-cran-etm/trunk/debian/control 2015-09-24 12:02:13 UTC (rev 20118)
@@ -0,0 +1,25 @@
+Source: r-cran-etm
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Testsuite: autopkgtest
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ cdbs,
+ r-base-dev,
+ r-cran-lattice,
+ r-cran-survival
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-etm/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-etm/trunk/
+Homepage: https://cran.r-project.org/web/packages/etm/
+
+Package: r-cran-etm
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${R:Depends},
+ r-cran-lattice,
+ r-cran-survival
+Description: GNU R empirical transition matrix
+ This GNU R package provides matrix of transition probabilities for any
+ time-inhomogeneous multistate model with finite state space.
Added: trunk/packages/R/r-cran-etm/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-etm/trunk/debian/copyright (rev 0)
+++ trunk/packages/R/r-cran-etm/trunk/debian/copyright 2015-09-24 12:02:13 UTC (rev 20118)
@@ -0,0 +1,30 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: etm
+Upstream-Contact: Arthur Allignol <arthur.allignol at uni-ulm.de>
+Source: http://cran.r-project.org/src/contrib/
+
+Files: *
+Copyright: 2008-2014 Arthur Allignol <arthur.allignol at uni-ulm.de>
+License: GPL-2+
+
+Files: debian/*
+Copyright: 2015 Andreas Tille <tille at debian.org>
+License: GPL-2+
+
+License: GPL-2+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU General Public
+ License can be found in `/usr/share/common-licenses/GPL'.
+
Added: trunk/packages/R/r-cran-etm/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-cran-etm/trunk/debian/docs (rev 0)
+++ trunk/packages/R/r-cran-etm/trunk/debian/docs 2015-09-24 12:02:13 UTC (rev 20118)
@@ -0,0 +1,3 @@
+debian/README.test
+debian/tests/run-unit-test
+tests
Added: trunk/packages/R/r-cran-etm/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-etm/trunk/debian/rules (rev 0)
+++ trunk/packages/R/r-cran-etm/trunk/debian/rules 2015-09-24 12:02:13 UTC (rev 20118)
@@ -0,0 +1,3 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk
Property changes on: trunk/packages/R/r-cran-etm/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/R/r-cran-etm/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-etm/trunk/debian/source/format (rev 0)
+++ trunk/packages/R/r-cran-etm/trunk/debian/source/format 2015-09-24 12:02:13 UTC (rev 20118)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/R/r-cran-etm/trunk/debian/tests/control
===================================================================
--- trunk/packages/R/r-cran-etm/trunk/debian/tests/control (rev 0)
+++ trunk/packages/R/r-cran-etm/trunk/debian/tests/control 2015-09-24 12:02:13 UTC (rev 20118)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr
Added: trunk/packages/R/r-cran-etm/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-cran-etm/trunk/debian/tests/run-unit-test (rev 0)
+++ trunk/packages/R/r-cran-etm/trunk/debian/tests/run-unit-test 2015-09-24 12:02:13 UTC (rev 20118)
@@ -0,0 +1,23 @@
+#!/bin/sh -e
+
+pkg=r-cran-cmprsk
+
+if [ "$ADTTMP" = "" ] ; then
+ ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp /usr/share/doc/${pkg}/tests/* $ADTTMP
+find . -name "*.gz" -exec gunzip \{\} \;
+for htest in `ls *.R | sed 's/\.R$//'` ; do
+ LC_ALL=C R --no-save < ${htest}.R 2>&1 | tee > ${htest}.Rout
+ diff -u ${htest}.Rout.save ${htest}.Rout
+ if [ ! $? ] ; then
+ echo "Test ${htest} failed"
+ exit 1
+ else
+ echo "Test ${htest} passed"
+ fi
+done
+rm -f $ADTTMP/*
+
+exit 0
Added: trunk/packages/R/r-cran-etm/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-etm/trunk/debian/watch (rev 0)
+++ trunk/packages/R/r-cran-etm/trunk/debian/watch 2015-09-24 12:02:13 UTC (rev 20118)
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/etm_([-\d.]*)\.tar\.gz
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