[med-svn] r20128 - trunk/packages/R/r-bioc-bsgenome/trunk/debian

[Andreas Tille]

Author: tille
Date: 2015-09-24 19:17:48 +0000 (Thu, 24 Sep 2015)
New Revision: 20128

Modified:
   trunk/packages/R/r-bioc-bsgenome/trunk/debian/changelog
   trunk/packages/R/r-bioc-bsgenome/trunk/debian/lintian-overrides
   trunk/packages/R/r-bioc-bsgenome/trunk/debian/watch
Log:
New upstream version, fixed watch, lintian


Modified: trunk/packages/R/r-bioc-bsgenome/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-bsgenome/trunk/debian/changelog	2015-09-24 18:53:42 UTC (rev 20127)
+++ trunk/packages/R/r-bioc-bsgenome/trunk/debian/changelog	2015-09-24 19:17:48 UTC (rev 20128)
@@ -1,3 +1,11 @@
+r-bioc-bsgenome (1.36.3-1) unstable; urgency=medium
+
+  * New upstream version
+  * fix watch file
+  * lintian-overrides for package-contains-timestamped-gzip
+
+ -- Andreas Tille <tille at debian.org>  Thu, 24 Sep 2015 20:56:23 +0200
+
 r-bioc-bsgenome (1.36.2-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-bsgenome/trunk/debian/lintian-overrides
===================================================================
--- trunk/packages/R/r-bioc-bsgenome/trunk/debian/lintian-overrides	2015-09-24 18:53:42 UTC (rev 20127)
+++ trunk/packages/R/r-bioc-bsgenome/trunk/debian/lintian-overrides	2015-09-24 19:17:48 UTC (rev 20128)
@@ -1,3 +1,5 @@
 # the empty directory is part of the template
 r-bioc-bsgenome: package-contains-empty-directory usr/lib/R/site-library/BSgenome/pkgtemplates/BSgenome_datapkg/inst/extdata/
 r-bioc-bsgenome: package-contains-empty-directory usr/lib/R/site-library/BSgenome/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata/
+# The gzip files are simply taken over from upstream source into binary package
+r-bioc-bsgenome: package-contains-timestamped-gzip usr/lib/R/site-library/*/extdata/*.gz

Modified: trunk/packages/R/r-bioc-bsgenome/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-bioc-bsgenome/trunk/debian/watch	2015-09-24 18:53:42 UTC (rev 20127)
+++ trunk/packages/R/r-bioc-bsgenome/trunk/debian/watch	2015-09-24 19:17:48 UTC (rev 20128)
@@ -1,3 +1,3 @@
 version=3
-opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \
+opts=downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc? \
  http://www.bioconductor.org/packages/release/bioc/html/BSgenome.html .*/BSgenome_([\d\.]+)\.tar\.gz