[med-svn] [mia] branch upstream updated (d3f2d76 -> 643942f)

[Gert Wollny]

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gert-guest pushed a change to branch upstream
in repository mia.

      from  d3f2d76   Imported Upstream version 2.2.4
       new  643942f   Imported Upstream version 2.2.5

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMakeLists.txt                   |   6 +-
 ChangeLog                        |  17 +
 doc/definitions.tex              |  38 --
 doc/idl.tex                      | 130 -------
 doc/make-xml.sh                  |  18 +
 doc/matlab.tex                   | 103 ------
 doc/miawritprogram.py            |  17 +
 doc/programing.tex               | 726 ---------------------------------------
 doc/running.tex                  |  70 ----
 doc/userguide.tex                | 336 ------------------
 mia/2d/test_fullcost.cc          |  18 +-
 mia/3d/datafield.hh              |   2 +
 mia/3d/matrix.hh                 |   3 +-
 mia/3d/test_fullcost.cc          |  24 +-
 mia/core/cmdlineparser.cc        |   2 +-
 mia/core/cmdstringoption.cc      |   2 +-
 mia/core/cmeans.cc               |   6 +-
 mia/core/cmeans.hh               |   2 +-
 mia/core/cmeansinit/static.cc    |   4 +-
 mia/core/handler.cxx             |   6 +-
 mia/core/handler.hh              |   2 +-
 mia/core/handlerbase.cc          |  12 +-
 mia/core/handlerbase.hh          |   6 +-
 mia/core/nccsum.hh               |   2 +-
 mia/core/optparam.cc             |   2 +-
 mia/core/parameter.cxx           |   2 +-
 mia/core/parameter.hh            |   5 +-
 mia/core/test_pixeltype.cc       |   2 +-
 mia/core/test_xmlinterface.cc    |   8 +-
 mia/core/xmlinterface.cc         |  12 +-
 mia/core/xmlinterface.hh         |   8 +-
 mia/mesh/filter/addscale.cc      |   2 +-
 scripts/remove-small-blobs.sh    |  61 ++++
 src/2dstack-cmeans-presegment.cc |  13 +-
 src/fluid2d/CMakeLists.txt       |   1 +
 src/fluid3d/CMakeLists.txt       |   2 +-
 src/isosurface/CMakeLists.txt    |   2 +
 37 files changed, 205 insertions(+), 1467 deletions(-)
 delete mode 100644 doc/definitions.tex
 delete mode 100644 doc/idl.tex
 delete mode 100644 doc/matlab.tex
 delete mode 100644 doc/programing.tex
 delete mode 100644 doc/running.tex
 delete mode 100644 doc/userguide.tex
 create mode 100644 scripts/remove-small-blobs.sh

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