[med-svn] [tide] 01/01: Patches suggested by Sébastien Jodogne (thanks Sébastien)

[Andreas Tille]

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tille pushed a commit to branch master
in repository tide.

commit daf3a55f67595fec7c44c90b32e21c1679169601
Author: Andreas Tille <tille at debian.org>
Date:   Wed Sep 30 21:53:06 2015 +0200

    Patches suggested by Sébastien Jodogne (thanks Sébastien)
---
 debian/patches/gcc-5.patch | 43 +++++++++++++++++++++++++++++++++++++++++++
 debian/patches/series      |  1 +
 2 files changed, 44 insertions(+)

diff --git a/debian/patches/gcc-5.patch b/debian/patches/gcc-5.patch
new file mode 100644
index 0000000..cacd73f
--- /dev/null
+++ b/debian/patches/gcc-5.patch
@@ -0,0 +1,43 @@
+Author: Sébastien Jodogne <s.jodogne at chu.ulg.ac.be>
+Last-Update: Wed, 30 Sep 2015 10:21:24 +0200
+Description: Build using gcc-5
+
+--- a/src/records.h
++++ b/src/records.h
+@@ -44,6 +44,7 @@
+ #ifndef RECORDS_H
+ #define RECORDS_H
+ 
++#include <unistd.h>
+ #include <sys/types.h>
+ #include <sys/stat.h>
+ #include <fcntl.h>
+--- a/src/modifications.h
++++ b/src/modifications.h
+@@ -1,5 +1,6 @@
+ // Benjamin Diament
+ 
++#include <climits>
+ #include<algorithm>
+ #include<iostream>
+ #include<stdio.h>
+--- a/src/peptide_mods.cc
++++ b/src/peptide_mods.cc
+@@ -1,6 +1,7 @@
+ // Benjamin Diament
+ //
+ 
++#include <deque>
+ #include <stdio.h>
+ #include <string>
+ #include <vector>
+--- a/src/search.cc
++++ b/src/search.cc
+@@ -3,6 +3,7 @@
+ // Search() implements the main scoring loop to match each observed spectrum
+ // with the best few candidate theoretical peptides and to report the results.
+   
++#include <deque>
+ #include <iostream>
+ #include <fstream>
+ #include <iomanip>
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..1ad11fc
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+gcc-5.patch

-- 
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